Wall clock time and date at job start Sat Apr 11 2020 05:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46900 * 109.46972 * 2 1 4 4 C 1.46901 * 111.00217 * 69.75111 * 3 2 1 5 5 C 1.46900 * 111.00286 * 193.70542 * 3 2 1 6 6 C 1.53001 * 109.46995 * 64.62091 * 5 3 2 7 7 C 1.53002 * 109.46907 * 304.62769 * 5 3 2 8 8 C 1.50694 * 109.47555 * 184.62931 * 5 3 2 9 9 O 1.21273 * 120.00332 * 135.77180 * 8 5 3 10 10 N 1.34784 * 119.99813 * 315.76444 * 8 5 3 11 11 C 1.46832 * 120.40914 * 182.98989 * 10 8 5 12 12 C 1.53364 * 109.24605 * 127.77821 * 11 10 8 13 13 C 1.52783 * 108.82176 * 53.83327 * 12 11 10 14 14 H 1.09002 * 108.96624 * 56.92926 * 13 12 11 15 15 O 1.42600 * 111.11914 * 177.46642 * 13 12 11 16 16 C 1.43148 * 113.63849 * 183.60720 * 15 13 12 17 17 C 1.53648 * 109.66197 * 298.17698 * 16 15 13 18 18 N 1.47350 * 108.55919 * 51.46590 * 17 16 15 19 19 C 1.36938 * 121.30303 * 129.70172 * 18 17 16 20 20 H 1.08004 * 119.99527 * 213.12885 * 19 18 17 21 21 C 1.38809 * 120.00158 * 33.12490 * 19 18 17 22 22 N 1.31615 * 120.00148 * 16.22209 * 21 19 18 23 23 Si 1.86798 * 119.99906 * 195.95029 * 21 19 18 24 24 H 1.48502 * 109.47265 * 54.94576 * 23 21 19 25 25 H 1.48505 * 109.47470 * 174.94534 * 23 21 19 26 26 H 1.48505 * 109.47280 * 294.94575 * 23 21 19 27 27 C 1.46866 * 117.38897 * 309.42575 * 18 17 16 28 28 H 1.09008 * 109.65834 * 292.62480 * 27 18 17 29 29 C 1.47132 * 120.40776 * 3.01620 * 10 8 5 30 30 H 1.09000 * 109.46881 * 183.78790 * 1 2 3 31 31 H 1.09003 * 109.47313 * 303.78687 * 1 2 3 32 32 H 1.08997 * 109.47088 * 63.79269 * 1 2 3 33 33 H 1.08995 * 109.47491 * 239.99695 * 2 1 3 34 34 H 1.09001 * 109.47439 * 119.99843 * 2 1 3 35 35 H 1.09000 * 109.47349 * 183.94949 * 4 3 2 36 36 H 1.09002 * 109.47191 * 303.95855 * 4 3 2 37 37 H 1.08999 * 109.47142 * 63.95376 * 4 3 2 38 38 H 1.09005 * 109.47114 * 179.97438 * 6 5 3 39 39 H 1.09001 * 109.47681 * 300.00872 * 6 5 3 40 40 H 1.09009 * 109.46833 * 60.00836 * 6 5 3 41 41 H 1.08999 * 109.47322 * 299.99487 * 7 5 3 42 42 H 1.09002 * 109.47301 * 59.99861 * 7 5 3 43 43 H 1.08999 * 109.47108 * 179.97438 * 7 5 3 44 44 H 1.08996 * 109.51183 * 7.84506 * 11 10 8 45 45 H 1.08996 * 109.50850 * 247.70980 * 11 10 8 46 46 H 1.08999 * 109.58344 * 294.02615 * 12 11 10 47 47 H 1.09008 * 109.58005 * 173.63280 * 12 11 10 48 48 H 1.08996 * 109.41992 * 58.40150 * 16 15 13 49 49 H 1.09002 * 109.42773 * 178.23399 * 16 15 13 50 50 H 1.08997 * 109.74703 * 291.70985 * 17 16 15 51 51 H 1.09002 * 109.65007 * 171.15835 * 17 16 15 52 52 H 0.97003 * 119.99848 * 4.69590 * 22 21 19 53 53 H 1.08997 * 109.72537 * 113.53446 * 29 10 8 54 54 H 1.09004 * 109.72600 * 352.86769 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7476 2.0396 1.2867 5 6 3.4513 1.4373 -0.3249 6 6 3.6677 0.9425 -1.7564 7 6 4.2274 0.5451 0.6459 8 6 3.9423 2.8569 -0.2044 9 8 4.9952 3.0894 0.3506 10 7 3.2112 3.8683 -0.7136 11 6 3.7116 5.2477 -0.6594 12 6 3.6563 5.8611 -2.0640 13 6 2.2376 5.7125 -2.6112 14 1 1.5400 6.1860 -1.9204 15 8 2.1161 6.3201 -3.8956 16 6 0.7862 6.2841 -4.4241 17 6 0.3423 4.8247 -4.6078 18 7 0.5720 4.1020 -3.3443 19 6 -0.4130 3.3448 -2.7685 20 1 -0.4761 3.2683 -1.6931 21 6 -1.3304 2.6758 -3.5670 22 7 -1.0825 2.4985 -4.8474 23 14 -2.9135 2.0205 -2.8228 24 1 -3.6340 3.1251 -2.1402 25 1 -3.7711 1.4600 -3.8979 26 1 -2.5940 0.9552 -1.8386 27 6 1.9008 4.2206 -2.7301 28 1 2.6411 3.7266 -3.3595 29 6 1.9017 3.6039 -1.3301 30 1 -0.3633 -1.0254 0.0679 31 1 -0.3634 0.5715 0.8541 32 1 -0.3633 0.4538 -0.9220 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 2.0566 3.0836 1.2357 36 1 0.6805 1.9865 1.5029 37 1 2.3038 1.5343 2.0762 38 1 4.7300 0.9817 -1.9977 39 1 3.3126 -0.0844 -1.8436 40 1 3.1148 1.5781 -2.4481 41 1 4.0733 0.8976 1.6657 42 1 3.8724 -0.4818 0.5587 43 1 5.2897 0.5836 0.4045 44 1 4.7415 5.2476 -0.3025 45 1 3.0909 5.8337 0.0184 46 1 4.3564 5.3408 -2.7176 47 1 3.9188 6.9178 -2.0117 48 1 0.1087 6.7881 -3.7350 49 1 0.7654 6.7920 -5.3883 50 1 0.9230 4.3606 -5.4050 51 1 -0.7178 4.7929 -4.8593 52 1 -0.2300 2.7744 -5.2190 53 1 1.1136 4.0563 -0.7282 54 1 1.7392 2.5284 -1.4017 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177040406.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:23 Heat of formation + Delta-G solvation = -42.044335 kcal Electronic energy + Delta-G solvation = -34385.716413 eV Core-core repulsion = 30358.649637 eV Total energy + Delta-G solvation = -4027.066776 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.17509 -40.52572 -38.85128 -37.47237 -36.72225 -33.94849 -33.22183 -33.01519 -31.46852 -31.03660 -28.65473 -28.31119 -26.88050 -26.51822 -25.73016 -24.26961 -23.88885 -22.60267 -21.48149 -21.13309 -19.68028 -19.12552 -18.45506 -17.33395 -17.17492 -16.90593 -16.64993 -16.37977 -16.16239 -15.90517 -15.71265 -15.37994 -15.26631 -15.06625 -14.79622 -14.58180 -14.45323 -14.04356 -13.81604 -13.46591 -13.41503 -13.25326 -13.16521 -13.14909 -13.03049 -12.81820 -12.64757 -12.56870 -12.45082 -12.38356 -12.33023 -12.11620 -12.07346 -11.87370 -11.83218 -11.63946 -11.54223 -11.16827 -10.81552 -10.67968 -10.37081 -9.68504 -9.08687 -8.82432 -8.05811 -5.38496 1.45216 1.63853 1.71054 1.87463 1.94236 2.66786 2.74660 2.79338 3.17678 3.41934 3.53341 3.77060 3.87406 3.90400 3.98801 4.07099 4.08825 4.16301 4.24590 4.26835 4.31506 4.35812 4.45820 4.48972 4.50142 4.55852 4.58613 4.62454 4.64703 4.67636 4.74847 4.77256 4.82393 4.86413 4.92837 4.93836 4.95872 4.97248 5.10037 5.13060 5.17008 5.21806 5.25950 5.40118 5.51429 5.62753 5.93111 5.97954 6.04419 6.21918 6.37318 6.49739 7.03811 7.09112 7.82314 8.29682 9.15631 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.009374 B = 0.006827 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2986.112236 B = 4100.370243 C = 6338.525547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.049 3.951 3 N -0.529 5.529 4 C 0.015 3.985 5 C 0.092 3.908 6 C -0.138 4.138 7 C -0.154 4.154 8 C 0.531 3.469 9 O -0.576 6.576 10 N -0.599 5.599 11 C 0.112 3.888 12 C -0.111 4.111 13 C 0.077 3.923 14 H 0.049 0.951 15 O -0.394 6.394 16 C 0.055 3.945 17 C 0.126 3.874 18 N -0.608 5.608 19 C -0.326 4.326 20 H 0.066 0.934 21 C -0.068 4.068 22 N -0.956 5.956 23 Si 1.105 2.895 24 H -0.283 1.283 25 H -0.302 1.302 26 H -0.263 1.263 27 C 0.136 3.864 28 H 0.005 0.995 29 C 0.120 3.880 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.041 0.959 33 H 0.078 0.922 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.084 0.916 37 H 0.042 0.958 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.046 0.954 41 H 0.058 0.942 42 H 0.085 0.915 43 H 0.065 0.935 44 H 0.097 0.903 45 H 0.081 0.919 46 H 0.061 0.939 47 H 0.102 0.898 48 H 0.048 0.952 49 H 0.109 0.891 50 H 0.005 0.995 51 H 0.059 0.941 52 H 0.254 0.746 53 H 0.055 0.945 54 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.494 -0.952 11.137 12.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.078 4.078 3 N -0.254 5.254 4 C -0.133 4.133 5 C 0.000 4.000 6 C -0.195 4.195 7 C -0.213 4.213 8 C 0.319 3.681 9 O -0.456 6.456 10 N -0.330 5.330 11 C -0.010 4.010 12 C -0.150 4.150 13 C 0.017 3.983 14 H 0.067 0.933 15 O -0.314 6.314 16 C -0.023 4.023 17 C 0.000 4.000 18 N -0.334 5.334 19 C -0.456 4.456 20 H 0.084 0.916 21 C -0.264 4.264 22 N -0.599 5.599 23 Si 0.931 3.069 24 H -0.210 1.210 25 H -0.229 1.229 26 H -0.188 1.188 27 C 0.029 3.971 28 H 0.023 0.977 29 C -0.002 4.002 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.060 0.940 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.103 0.897 37 H 0.060 0.940 38 H 0.087 0.913 39 H 0.105 0.895 40 H 0.066 0.934 41 H 0.077 0.923 42 H 0.104 0.896 43 H 0.084 0.916 44 H 0.115 0.885 45 H 0.099 0.901 46 H 0.079 0.921 47 H 0.121 0.879 48 H 0.067 0.933 49 H 0.127 0.873 50 H 0.023 0.977 51 H 0.078 0.922 52 H 0.065 0.935 53 H 0.073 0.927 54 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 5.493 -1.257 10.664 12.061 hybrid contribution 1.448 0.486 0.252 1.548 sum 6.941 -0.771 10.916 12.958 Atomic orbital electron populations 1.21807 0.94704 1.02088 1.02031 1.22225 0.96068 0.87630 1.01834 1.62500 1.12595 1.18596 1.31713 1.22548 1.02760 0.98778 0.89178 1.21257 0.89068 0.91485 0.98204 1.21909 1.02043 1.02677 0.92899 1.22158 1.00916 0.99672 0.98531 1.20661 0.83198 0.87394 0.76848 1.90627 1.24549 1.85155 1.45219 1.48315 1.20153 1.07082 1.57442 1.21654 1.01667 0.81575 0.96107 1.21797 0.94329 1.02965 0.95900 1.22542 0.97574 0.93497 0.84645 0.93266 1.87755 1.29713 1.79342 1.34551 1.23162 0.83253 0.96647 0.99254 1.21567 0.99137 0.91155 0.88132 1.44291 1.08579 1.55223 1.25316 1.20079 1.08504 1.24564 0.92427 0.91644 1.27050 1.06733 0.96602 0.96051 1.70896 1.26077 1.48226 1.14704 0.83000 0.72814 0.76598 0.74515 1.20953 1.22907 1.18803 1.21471 0.86934 0.94192 0.94549 0.97742 1.22434 0.81298 1.06636 0.89847 0.90904 0.92186 0.93996 0.90347 0.92427 0.92648 0.89746 0.93978 0.91340 0.89466 0.93444 0.92316 0.89635 0.91643 0.88473 0.90065 0.92054 0.87919 0.93327 0.87327 0.97714 0.92219 0.93480 0.92677 0.83311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 9.99 71.98 0.72 -3.01 16 2 C 0.05 1.13 4.55 86.30 0.39 1.52 16 3 N -0.53 -14.06 1.58 -876.87 -1.38 -15.44 16 4 C 0.02 0.37 8.21 127.69 1.05 1.41 16 5 C 0.09 2.50 0.29 2.78 0.00 2.50 16 6 C -0.14 -3.83 8.14 71.98 0.59 -3.25 16 7 C -0.15 -3.50 7.19 71.98 0.52 -2.98 16 8 C 0.53 16.81 5.11 87.65 0.45 17.25 16 9 O -0.58 -20.43 15.40 -3.01 -0.05 -20.48 16 10 N -0.60 -18.93 2.41 -818.69 -1.98 -20.91 16 11 C 0.11 3.13 6.40 86.44 0.55 3.68 16 12 C -0.11 -3.25 5.82 30.64 0.18 -3.07 16 13 C 0.08 2.77 2.47 30.66 0.08 2.85 16 14 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 15 O -0.39 -15.25 10.49 -148.98 -1.56 -16.81 16 16 C 0.05 2.08 6.97 72.20 0.50 2.58 16 17 C 0.13 5.88 4.80 86.43 0.41 6.29 16 18 N -0.61 -29.04 2.86 -673.04 -1.93 -30.97 16 19 C -0.33 -16.50 8.69 84.03 0.73 -15.77 16 20 H 0.07 3.23 6.44 -2.91 -0.02 3.22 16 21 C -0.07 -3.62 4.93 84.86 0.42 -3.20 16 22 N -0.96 -55.84 12.62 21.65 0.27 -55.57 16 23 Si 1.11 47.77 29.95 68.60 2.05 49.82 16 24 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 25 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 26 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 27 C 0.14 5.60 3.02 45.05 0.14 5.73 16 28 H 0.00 0.23 8.07 -2.38 -0.02 0.21 16 29 C 0.12 4.32 2.25 86.25 0.19 4.52 16 30 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.06 1.39 6.46 -2.39 -0.02 1.38 16 32 H 0.04 1.36 8.14 -2.39 -0.02 1.35 16 33 H 0.08 1.82 5.91 -2.39 -0.01 1.81 16 34 H 0.06 1.08 7.02 -2.39 -0.02 1.06 16 35 H 0.05 1.51 5.94 -2.39 -0.01 1.49 16 36 H 0.08 1.93 6.39 -2.39 -0.02 1.92 16 37 H 0.04 0.91 6.56 -2.39 -0.02 0.90 16 38 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 39 H 0.09 2.10 6.26 -2.39 -0.01 2.09 16 40 H 0.05 1.63 6.55 -2.38 -0.02 1.61 16 41 H 0.06 1.35 6.64 -2.39 -0.02 1.34 16 42 H 0.08 1.57 6.65 -2.39 -0.02 1.55 16 43 H 0.06 1.56 7.93 -2.39 -0.02 1.55 16 44 H 0.10 2.67 7.01 -2.39 -0.02 2.65 16 45 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 46 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 47 H 0.10 2.51 8.14 -2.38 -0.02 2.49 16 48 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 49 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 50 H 0.00 0.25 7.57 -2.39 -0.02 0.23 16 51 H 0.06 3.06 6.70 -2.39 -0.02 3.04 16 52 H 0.25 15.27 6.02 -92.71 -0.56 14.71 16 53 H 0.05 2.09 7.34 -2.39 -0.02 2.08 16 54 H 0.15 5.63 3.37 -2.38 -0.01 5.62 16 Total: -1.00 -63.66 383.58 3.45 -60.21 By element: Atomic # 1 Polarization: 31.98 SS G_CDS: 1.10 Total: 33.08 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: 6.92 Total: 17.06 kcal Atomic # 7 Polarization: -117.87 SS G_CDS: -5.01 Total: -122.89 kcal Atomic # 8 Polarization: -35.68 SS G_CDS: -1.61 Total: -37.29 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 2.05 Total: 49.82 kcal Total: -63.66 3.45 -60.21 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177040406.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.166 kcal (2) G-P(sol) polarization free energy of solvation -63.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds