Wall clock time and date at job start Sat Apr 11 2020 05:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46901 * 109.46945 * 2 1 4 4 C 1.46846 * 110.99869 * 288.39020 * 3 2 1 5 5 C 1.53042 * 109.52171 * 174.16135 * 4 3 2 6 6 C 1.53121 * 109.27969 * 59.17462 * 5 4 3 7 7 C 1.53110 * 109.16007 * 302.34686 * 6 5 4 8 8 C 1.46847 * 111.00030 * 164.17726 * 3 2 1 9 9 H 1.09000 * 109.45566 * 65.83035 * 8 3 2 10 10 C 1.50695 * 109.46086 * 305.85446 * 8 3 2 11 11 O 1.21284 * 120.00324 * 332.75390 * 10 8 3 12 12 N 1.34780 * 119.99988 * 152.75812 * 10 8 3 13 13 C 1.47505 * 118.75718 * 355.27494 * 12 10 8 14 14 C 1.53560 * 111.03314 * 138.34933 * 13 12 10 15 15 C 1.51535 * 109.57537 * 320.01475 * 14 13 12 16 16 O 1.42156 * 108.75355 * 91.40707 * 15 14 13 17 17 C 1.38016 * 119.43846 * 272.77076 * 16 15 14 18 18 H 1.08992 * 109.47209 * 303.41976 * 17 16 15 19 19 C 1.52998 * 109.46999 * 183.42525 * 17 16 15 20 20 N 1.46502 * 109.46858 * 65.00201 * 19 17 16 21 21 C 1.36939 * 120.00202 * 180.02562 * 20 19 17 22 22 H 1.08003 * 119.99753 * 359.97438 * 21 20 19 23 23 C 1.38804 * 120.00610 * 180.02562 * 21 20 19 24 24 N 1.31623 * 119.99839 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00696 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47193 * 89.99676 * 25 23 21 27 27 H 1.48490 * 109.47245 * 210.00049 * 25 23 21 28 28 H 1.48503 * 109.46781 * 330.00138 * 25 23 21 29 29 C 1.45124 * 118.75880 * 175.25394 * 12 10 8 30 30 H 1.09000 * 109.47257 * 60.00405 * 1 2 3 31 31 H 1.09000 * 109.46627 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46848 * 299.99376 * 1 2 3 33 33 H 1.09001 * 109.46939 * 240.00160 * 2 1 3 34 34 H 1.08993 * 109.47575 * 119.99815 * 2 1 3 35 35 H 1.08996 * 109.46686 * 54.14384 * 4 3 2 36 36 H 1.09004 * 109.46052 * 294.16988 * 4 3 2 37 37 H 1.08999 * 109.50426 * 299.23225 * 5 4 3 38 38 H 1.09007 * 109.50392 * 179.11795 * 5 4 3 39 39 H 1.09004 * 109.52094 * 182.44182 * 6 5 4 40 40 H 1.09000 * 109.56977 * 62.28414 * 6 5 4 41 41 H 1.09002 * 109.50358 * 297.71264 * 7 6 5 42 42 H 1.09003 * 109.50372 * 177.59703 * 7 6 5 43 43 H 1.09008 * 109.16605 * 17.94320 * 13 12 10 44 44 H 1.09007 * 109.16228 * 258.74932 * 13 12 10 45 45 H 1.08994 * 109.45712 * 80.05168 * 14 13 12 46 46 H 1.09003 * 109.45690 * 199.98634 * 14 13 12 47 47 H 1.09003 * 109.59534 * 211.18241 * 15 14 13 48 48 H 1.08996 * 109.59219 * 331.62387 * 15 14 13 49 49 H 1.09000 * 109.47121 * 184.99914 * 19 17 16 50 50 H 1.09001 * 109.47609 * 305.00161 * 19 17 16 51 51 H 0.96996 * 120.00071 * 359.97438 * 20 19 17 52 52 H 0.96996 * 120.00659 * 179.97438 * 24 23 21 53 53 H 1.08996 * 109.45923 * 149.29125 * 29 12 10 54 54 H 1.08994 * 109.44912 * 29.32085 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7873 2.0253 -1.3009 5 6 2.1745 3.5037 -1.2197 6 6 3.6507 3.6190 -0.8294 7 6 3.8751 2.9025 0.5050 8 6 3.4386 1.4416 0.3738 9 1 4.0363 0.9516 -0.3948 10 6 3.6393 0.7374 1.6909 11 8 2.7292 0.6751 2.4902 12 7 4.8302 0.1768 1.9808 13 6 5.8842 0.1761 0.9489 14 6 7.2538 0.5067 1.5597 15 6 7.0964 1.5998 2.5973 16 8 6.8822 0.9974 3.8669 17 6 5.5986 0.6705 4.2548 18 1 4.9706 1.5606 4.2192 19 6 5.6218 0.1195 5.6819 20 7 6.0492 1.1734 6.6054 21 6 6.1462 0.9113 7.9459 22 1 5.9072 -0.0723 8.3225 23 6 6.5506 1.9100 8.8210 24 7 6.8413 3.1089 8.3622 25 14 6.6822 1.5526 10.6498 26 1 8.0509 1.0686 10.9623 27 1 6.4088 2.7938 11.4176 28 1 5.6916 0.5112 11.0231 29 6 5.0273 -0.4029 3.2966 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 0.7332 1.9399 -1.5646 36 1 2.3929 1.5325 -2.0616 37 1 1.5598 4.0002 -0.4690 38 1 2.0167 3.9750 -2.1899 39 1 3.9196 4.6704 -0.7281 40 1 4.2690 3.1573 -1.5993 41 1 3.2871 3.3896 1.2829 42 1 4.9323 2.9443 0.7672 43 1 5.6420 0.9197 0.1895 44 1 5.9283 -0.8084 0.4831 45 1 7.6657 -0.3852 2.0316 46 1 7.9292 0.8463 0.7744 47 1 8.0012 2.2069 2.6289 48 1 6.2421 2.2265 2.3413 49 1 4.6233 -0.2210 5.9562 50 1 6.3188 -0.7167 5.7373 51 1 6.2641 2.0568 6.2671 52 1 7.1235 3.8070 8.9737 53 1 5.7270 -1.2355 3.2254 54 1 4.0730 -0.7623 3.6814 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202165548.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:47 Heat of formation + Delta-G solvation = -77.528828 kcal Electronic energy + Delta-G solvation = -32144.381985 eV Core-core repulsion = 28115.776486 eV Total energy + Delta-G solvation = -4028.605499 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.07447 -40.37518 -38.88857 -36.98290 -36.29121 -35.23012 -34.36642 -32.70506 -32.46744 -30.75134 -30.20705 -28.01436 -26.80287 -25.70495 -25.06120 -24.05142 -22.82386 -22.46293 -22.27925 -21.02026 -19.88684 -19.27788 -18.60443 -17.87773 -17.65090 -17.05247 -16.90556 -16.42392 -16.14581 -15.87432 -15.61834 -15.48207 -15.17527 -15.12841 -14.82216 -14.76935 -14.45429 -14.25433 -14.07817 -13.97926 -13.80116 -13.49839 -13.30038 -13.12059 -12.82441 -12.77504 -12.71073 -12.65302 -12.47362 -12.24164 -12.19114 -12.07864 -11.99158 -11.84043 -11.74445 -11.59761 -11.48645 -11.24625 -10.99187 -10.65234 -10.54996 -9.67661 -9.25269 -9.03128 -7.95188 -5.25404 1.45396 1.47402 1.49132 1.57532 1.80721 2.55333 2.70446 2.81780 3.31207 3.38143 3.60106 3.76534 3.79675 3.86756 3.91356 3.98807 4.02894 4.08889 4.10902 4.19394 4.23278 4.27682 4.35936 4.37876 4.41939 4.50668 4.55727 4.56804 4.66285 4.68728 4.71225 4.74145 4.80804 4.85855 4.87869 4.92120 5.05046 5.05990 5.08612 5.10912 5.15561 5.20565 5.22179 5.32935 5.44621 5.45759 5.49123 5.94365 6.13670 6.25148 6.28802 6.73088 7.11188 7.31269 8.04754 8.30416 9.28752 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015246 B = 0.002791 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.124729 B =10029.365250 C =10367.961549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.049 3.951 3 N -0.541 5.541 4 C 0.056 3.944 5 C -0.119 4.119 6 C -0.111 4.111 7 C -0.109 4.109 8 C 0.079 3.921 9 H 0.089 0.911 10 C 0.505 3.495 11 O -0.562 6.562 12 N -0.609 5.609 13 C 0.097 3.903 14 C -0.155 4.155 15 C 0.063 3.937 16 O -0.396 6.396 17 C 0.108 3.892 18 H 0.016 0.984 19 C 0.163 3.837 20 N -0.740 5.740 21 C -0.249 4.249 22 H 0.078 0.922 23 C -0.078 4.078 24 N -0.971 5.971 25 Si 0.980 3.020 26 H -0.283 1.283 27 H -0.294 1.294 28 H -0.269 1.269 29 C 0.095 3.905 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.040 0.960 33 H 0.048 0.952 34 H 0.052 0.948 35 H 0.085 0.915 36 H 0.050 0.950 37 H 0.053 0.947 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.045 0.955 42 H 0.078 0.922 43 H 0.106 0.894 44 H 0.092 0.908 45 H 0.076 0.924 46 H 0.123 0.877 47 H 0.097 0.903 48 H 0.043 0.957 49 H 0.033 0.967 50 H 0.034 0.966 51 H 0.373 0.627 52 H 0.252 0.748 53 H 0.103 0.897 54 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.961 -4.978 -30.569 31.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.079 4.079 3 N -0.267 5.267 4 C -0.070 4.070 5 C -0.156 4.156 6 C -0.149 4.149 7 C -0.147 4.147 8 C -0.033 4.033 9 H 0.106 0.894 10 C 0.294 3.706 11 O -0.440 6.440 12 N -0.342 5.342 13 C -0.024 4.024 14 C -0.193 4.193 15 C -0.013 4.013 16 O -0.315 6.315 17 C 0.048 3.952 18 H 0.034 0.966 19 C 0.036 3.964 20 N -0.383 5.383 21 C -0.381 4.381 22 H 0.096 0.904 23 C -0.270 4.270 24 N -0.621 5.621 25 Si 0.808 3.192 26 H -0.210 1.210 27 H -0.220 1.220 28 H -0.193 1.193 29 C -0.030 4.030 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.110 0.890 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.064 0.936 42 H 0.097 0.903 43 H 0.124 0.876 44 H 0.110 0.890 45 H 0.094 0.906 46 H 0.141 0.859 47 H 0.115 0.885 48 H 0.061 0.939 49 H 0.051 0.949 50 H 0.052 0.948 51 H 0.204 0.796 52 H 0.060 0.940 53 H 0.121 0.879 54 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.576 -4.937 -29.561 30.485 hybrid contribution 0.258 0.017 0.861 0.899 sum -5.318 -4.920 -28.700 29.601 Atomic orbital electron populations 1.21669 0.93998 1.01889 1.01917 1.22115 0.97273 0.88262 1.00236 1.61625 1.15320 1.18175 1.31615 1.22245 1.02110 0.94960 0.87731 1.21638 0.96237 0.95338 1.02433 1.21560 0.97029 1.01057 0.95245 1.21585 1.01102 0.92130 0.99891 1.21669 0.91106 0.97444 0.93049 0.89399 1.21223 0.81835 0.77967 0.89613 1.90711 1.42650 1.59024 1.51568 1.48075 1.13877 1.57970 1.14260 1.22395 0.86323 1.04323 0.89311 1.22427 0.97141 1.00005 0.99703 1.22443 1.01250 0.95175 0.82417 1.86357 1.27683 1.80250 1.37223 1.21837 0.84007 0.95731 0.93665 0.96596 1.20743 0.97155 0.91728 0.86793 1.42427 1.81291 1.10973 1.03584 1.19680 1.36974 0.96771 0.84628 0.90445 1.25659 1.02747 0.95689 1.02881 1.69853 1.53807 1.03243 1.35220 0.85049 0.77992 0.76728 0.79426 1.21032 1.22029 1.19340 1.22080 1.02193 0.96166 0.82517 0.91322 0.91455 0.94051 0.93407 0.92918 0.89664 0.93178 0.92841 0.88967 0.90520 0.89705 0.93586 0.90323 0.87615 0.88972 0.90561 0.85910 0.88545 0.93907 0.94943 0.94820 0.79551 0.93968 0.87862 0.90479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.96 71.98 0.72 -1.82 16 2 C 0.05 0.99 5.31 86.30 0.46 1.45 16 3 N -0.54 -11.22 4.21 -875.50 -3.68 -14.91 16 4 C 0.06 0.78 5.30 86.33 0.46 1.24 16 5 C -0.12 -1.51 6.09 30.65 0.19 -1.32 16 6 C -0.11 -1.36 6.00 30.67 0.18 -1.17 16 7 C -0.11 -2.04 5.19 30.64 0.16 -1.89 16 8 C 0.08 1.56 1.39 44.19 0.06 1.62 16 9 H 0.09 1.21 6.24 -2.39 -0.01 1.20 16 10 C 0.51 14.00 5.55 87.65 0.49 14.49 16 11 O -0.56 -21.33 14.65 -3.04 -0.04 -21.37 16 12 N -0.61 -14.61 2.19 -817.97 -1.79 -16.41 16 13 C 0.10 1.39 5.85 86.38 0.51 1.90 16 14 C -0.15 -2.42 5.78 30.30 0.18 -2.24 16 15 C 0.06 1.58 6.37 71.50 0.46 2.03 16 16 O -0.40 -14.39 9.38 -117.88 -1.11 -15.50 16 17 C 0.11 4.10 2.68 31.21 0.08 4.18 16 18 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 19 C 0.16 7.36 5.92 86.38 0.51 7.87 16 20 N -0.74 -41.85 5.54 -343.45 -1.90 -43.75 16 21 C -0.25 -14.95 9.99 84.03 0.84 -14.11 16 22 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 23 C -0.08 -4.73 5.50 84.86 0.47 -4.26 16 24 N -0.97 -62.78 13.06 21.65 0.28 -62.50 16 25 Si 0.98 48.33 29.55 68.60 2.03 50.36 16 26 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 27 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 28 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 29 C 0.10 2.81 4.90 87.26 0.43 3.24 16 30 H 0.07 1.01 6.65 -2.39 -0.02 0.99 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.05 0.76 8.06 -2.39 -0.02 0.74 16 34 H 0.05 1.40 5.62 -2.39 -0.01 1.39 16 35 H 0.09 1.09 6.49 -2.39 -0.02 1.08 16 36 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 37 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 39 H 0.08 0.87 8.14 -2.38 -0.02 0.86 16 40 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.08 1.33 6.82 -2.39 -0.02 1.32 16 43 H 0.11 1.05 4.99 -2.38 -0.01 1.03 16 44 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 45 H 0.08 1.37 8.01 -2.39 -0.02 1.35 16 46 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 48 H 0.04 1.10 6.53 -2.39 -0.02 1.09 16 49 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 50 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 51 H 0.37 22.68 7.65 -92.71 -0.71 21.97 16 52 H 0.25 15.62 8.31 -92.71 -0.77 14.85 16 53 H 0.10 2.61 8.11 -2.39 -0.02 2.59 16 54 H 0.08 2.55 7.21 -2.39 -0.02 2.53 16 Total: -1.00 -80.32 404.22 0.13 -80.19 By element: Atomic # 1 Polarization: 32.53 SS G_CDS: 0.17 Total: 32.69 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: 6.18 Total: 11.19 kcal Atomic # 7 Polarization: -130.47 SS G_CDS: -7.10 Total: -137.56 kcal Atomic # 8 Polarization: -35.72 SS G_CDS: -1.15 Total: -36.87 kcal Atomic # 14 Polarization: 48.33 SS G_CDS: 2.03 Total: 50.36 kcal Total: -80.32 0.13 -80.19 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202165548.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.666 kcal (2) G-P(sol) polarization free energy of solvation -80.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds