Wall clock time and date at job start Sat Apr 11 2020 05:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46492 * 109.47458 * 2 1 4 4 C 1.46499 * 120.00347 * 269.99957 * 3 2 1 5 5 C 1.52997 * 109.47432 * 269.99978 * 4 3 2 6 6 C 1.34776 * 119.99975 * 90.00008 * 3 2 1 7 7 O 1.21285 * 120.00350 * 180.02562 * 6 3 2 8 8 C 1.50702 * 120.00203 * 0.02562 * 6 3 2 9 9 C 1.53002 * 109.47289 * 180.02562 * 8 6 3 10 10 C 1.53001 * 109.47106 * 179.97438 * 9 8 6 11 11 C 1.50695 * 109.47378 * 179.97438 * 10 9 8 12 12 O 1.21283 * 119.99550 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00348 * 179.97438 * 11 10 9 14 14 C 1.46503 * 119.99621 * 0.02562 * 13 11 10 15 15 C 1.46498 * 120.00351 * 180.02562 * 13 11 10 16 16 C 1.53004 * 109.46933 * 264.36694 * 15 13 11 17 17 H 1.08991 * 112.78006 * 316.23261 * 16 15 13 18 18 C 1.53754 * 113.55238 * 87.09230 * 16 15 13 19 19 C 1.53496 * 83.25808 * 140.98316 * 18 16 15 20 20 N 1.47069 * 87.98784 * 333.76422 * 19 18 16 21 21 C 1.36934 * 136.05813 * 207.08833 * 20 19 18 22 22 H 1.08009 * 119.99607 * 172.13701 * 21 20 19 23 23 C 1.38807 * 120.00007 * 351.85766 * 21 20 19 24 24 N 1.31613 * 120.00127 * 0.27757 * 23 21 20 25 25 Si 1.86802 * 119.99886 * 180.27667 * 23 21 20 26 26 H 1.48499 * 109.46994 * 90.00268 * 25 23 21 27 27 H 1.48500 * 109.47318 * 209.99908 * 25 23 21 28 28 H 1.48501 * 109.47457 * 330.00317 * 25 23 21 29 29 H 1.09000 * 109.47704 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47277 * 299.99915 * 1 2 3 31 31 H 1.09003 * 109.46882 * 59.99517 * 1 2 3 32 32 H 1.09001 * 109.47277 * 240.00084 * 2 1 3 33 33 H 1.09003 * 109.46882 * 120.00483 * 2 1 3 34 34 H 1.08998 * 109.46876 * 30.00018 * 4 3 2 35 35 H 1.09007 * 109.47488 * 149.99378 * 4 3 2 36 36 H 1.08998 * 109.47122 * 299.99889 * 5 4 3 37 37 H 1.08999 * 109.47148 * 59.99924 * 5 4 3 38 38 H 1.08995 * 109.47282 * 179.97438 * 5 4 3 39 39 H 1.08998 * 109.47326 * 59.99822 * 8 6 3 40 40 H 1.09005 * 109.46994 * 299.99857 * 8 6 3 41 41 H 1.08998 * 109.47205 * 59.99596 * 9 8 6 42 42 H 1.09005 * 109.46862 * 299.99787 * 9 8 6 43 43 H 1.09003 * 109.46841 * 59.99928 * 10 9 8 44 44 H 1.08997 * 109.47021 * 300.00046 * 10 9 8 45 45 H 1.09003 * 109.46576 * 270.21896 * 14 13 11 46 46 H 1.08998 * 109.47217 * 30.21266 * 14 13 11 47 47 H 1.08998 * 109.47183 * 150.22079 * 14 13 11 48 48 H 1.08993 * 109.47200 * 144.36309 * 15 13 11 49 49 H 1.09004 * 109.47038 * 24.36247 * 15 13 11 50 50 H 1.09002 * 114.39426 * 27.42443 * 18 16 15 51 51 H 1.08999 * 114.26870 * 254.53490 * 18 16 15 52 52 H 1.09002 * 113.46916 * 218.98183 * 19 18 16 53 53 H 1.09005 * 113.52179 * 88.54961 * 19 18 16 54 54 H 0.97005 * 120.00306 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.7075 1.8313 -1.7104 6 6 2.2430 2.0164 1.1672 7 8 2.6469 3.1600 1.1673 8 6 1.9923 1.3059 2.4723 9 6 2.3231 2.2435 3.6353 10 6 2.0680 1.5223 4.9603 11 6 2.3943 2.4455 6.1057 12 8 2.7914 3.5699 5.8841 13 7 2.2440 2.0222 7.3764 14 6 1.7639 0.6642 7.6441 15 6 2.5607 2.9199 8.4900 16 6 3.9886 2.6525 8.9703 17 1 4.2156 1.5893 9.0478 18 6 5.0547 3.4519 8.2033 19 6 5.6979 3.5793 9.5912 20 7 4.3557 3.4187 10.1708 21 6 3.7266 3.8068 11.3235 22 1 2.6642 3.6499 11.4379 23 6 4.4554 4.3966 12.3471 24 7 5.7501 4.5878 12.2076 25 14 3.5985 4.9190 13.9227 26 1 3.6175 3.7946 14.8926 27 1 4.3046 6.0879 14.5061 28 1 2.1923 5.2896 13.6220 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8932 -0.5139 0.8900 34 1 1.5817 1.6877 -2.0283 35 1 2.0955 3.1411 -1.1384 36 1 4.3883 2.2154 -0.9507 37 1 3.8745 0.7621 -1.8408 38 1 3.8891 2.3448 -2.6545 39 1 2.6228 0.4186 2.5299 40 1 0.9444 1.0114 2.5303 41 1 1.6923 3.1306 3.5775 42 1 3.3709 2.5384 3.5775 43 1 2.6985 0.6350 5.0182 44 1 1.0201 1.2277 5.0178 45 1 0.6756 0.6693 7.7060 46 1 2.0787 0.0020 6.8376 47 1 2.1799 0.3111 8.5876 48 1 1.8630 2.7436 9.3085 49 1 2.4770 3.9546 8.1576 50 1 4.6982 4.3945 7.7878 51 1 5.6344 2.8605 7.4947 52 1 6.1369 4.5593 9.7779 53 1 6.3759 2.7608 9.8332 54 1 6.2593 5.0003 12.9228 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264374143.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:23 Heat of formation + Delta-G solvation = -46.321903 kcal Electronic energy + Delta-G solvation = -29850.538949 eV Core-core repulsion = 25823.286684 eV Total energy + Delta-G solvation = -4027.252265 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.20525 -40.86877 -39.64046 -37.23706 -36.42141 -35.34780 -34.28063 -33.02718 -30.92501 -30.23707 -29.91970 -28.71924 -27.20415 -25.43453 -24.95866 -24.38044 -23.69306 -22.34368 -21.06339 -20.10415 -19.69175 -18.72352 -18.04412 -17.85676 -17.41431 -17.17786 -17.07228 -16.63039 -16.35581 -15.81954 -15.64178 -15.18537 -14.85996 -14.79845 -14.66396 -14.43721 -14.02283 -13.87397 -13.83957 -13.59357 -13.46026 -13.43909 -13.18157 -13.00904 -12.99307 -12.82572 -12.73916 -12.64203 -12.56997 -12.47624 -12.27276 -12.21392 -11.98051 -11.88040 -11.85153 -11.67209 -11.61256 -11.18589 -10.87311 -10.83798 -10.62247 -9.67602 -9.53956 -8.90851 -7.91962 -5.25671 1.43920 1.47142 1.55515 1.68000 1.77944 1.99525 2.18311 2.48752 3.28675 3.42112 3.58550 3.68765 3.85365 4.06164 4.07964 4.11327 4.17127 4.22499 4.26092 4.35011 4.39599 4.41634 4.48398 4.50495 4.59497 4.60033 4.67120 4.69129 4.70203 4.76370 4.79241 4.85080 4.87906 4.98577 4.99254 5.04449 5.05332 5.08421 5.09614 5.19579 5.20877 5.26839 5.42046 5.45468 5.46764 5.54658 5.68698 5.72869 5.90934 6.44886 6.56937 6.88351 7.25125 7.34360 7.58972 8.61351 9.27368 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.025196 B = 0.001841 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.011654 B =15201.357091 C =15791.446929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.097 3.903 3 N -0.614 5.614 4 C 0.105 3.895 5 C -0.161 4.161 6 C 0.500 3.500 7 O -0.594 6.594 8 C -0.127 4.127 9 C -0.086 4.086 10 C -0.122 4.122 11 C 0.496 3.504 12 O -0.589 6.589 13 N -0.613 5.613 14 C 0.071 3.929 15 C 0.128 3.872 16 C 0.140 3.860 17 H 0.057 0.943 18 C -0.135 4.135 19 C 0.154 3.846 20 N -0.630 5.630 21 C -0.223 4.223 22 H 0.090 0.910 23 C -0.073 4.073 24 N -0.957 5.957 25 Si 0.982 3.018 26 H -0.282 1.282 27 H -0.298 1.298 28 H -0.266 1.266 29 H 0.088 0.912 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.053 0.947 36 H 0.029 0.971 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.128 0.872 40 H 0.126 0.874 41 H 0.041 0.959 42 H 0.041 0.959 43 H 0.129 0.871 44 H 0.129 0.871 45 H 0.075 0.925 46 H 0.107 0.893 47 H 0.067 0.933 48 H 0.072 0.928 49 H 0.054 0.946 50 H 0.062 0.938 51 H 0.075 0.925 52 H 0.026 0.974 53 H 0.022 0.978 54 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.514 -20.064 -28.441 37.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.024 4.024 3 N -0.346 5.346 4 C -0.017 4.017 5 C -0.219 4.219 6 C 0.290 3.710 7 O -0.475 6.475 8 C -0.166 4.166 9 C -0.125 4.125 10 C -0.161 4.161 11 C 0.287 3.713 12 O -0.469 6.469 13 N -0.346 5.346 14 C -0.071 4.071 15 C 0.003 3.997 16 C 0.033 3.967 17 H 0.074 0.926 18 C -0.173 4.173 19 C 0.029 3.971 20 N -0.356 5.356 21 C -0.351 4.351 22 H 0.108 0.892 23 C -0.266 4.266 24 N -0.606 5.606 25 Si 0.809 3.191 26 H -0.209 1.209 27 H -0.224 1.224 28 H -0.190 1.190 29 H 0.106 0.894 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.114 0.886 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.072 0.928 36 H 0.048 0.952 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.146 0.854 40 H 0.144 0.856 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.147 0.853 44 H 0.147 0.853 45 H 0.093 0.907 46 H 0.125 0.875 47 H 0.086 0.914 48 H 0.091 0.909 49 H 0.073 0.927 50 H 0.081 0.919 51 H 0.093 0.907 52 H 0.044 0.956 53 H 0.040 0.960 54 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -13.168 -18.775 -28.241 36.379 hybrid contribution 0.329 1.088 1.294 1.722 sum -12.839 -17.686 -26.947 34.696 Atomic orbital electron populations 1.22210 0.95173 1.03477 1.02032 1.21901 0.94916 0.80290 1.05338 1.48252 1.65393 1.15684 1.05318 1.21459 0.97455 0.97454 0.85349 1.22064 0.95988 1.02706 1.01162 1.21432 0.76135 0.86208 0.87185 1.90726 1.47771 1.20746 1.88223 1.21748 1.06238 0.99606 0.89037 1.20953 1.01328 0.97614 0.92568 1.21723 1.06256 0.98374 0.89761 1.21636 0.76598 0.88345 0.84764 1.90723 1.47808 1.23358 1.84975 1.47990 1.65670 1.15820 1.05077 1.22116 1.00413 0.80676 1.03855 1.21357 0.95970 0.94013 0.88386 1.22533 0.93829 0.94907 0.85416 0.92589 1.23423 0.98571 0.99876 0.95437 1.21899 0.88515 0.97741 0.88995 1.45982 1.10350 1.60695 1.18574 1.19323 0.92346 1.32430 0.91034 0.89213 1.25766 0.96387 1.02823 1.01610 1.70055 1.07149 1.49680 1.33699 0.85029 0.77822 0.77045 0.79158 1.20883 1.22428 1.19027 0.89351 0.92830 0.93145 0.88612 0.88052 0.87937 0.92816 0.95164 0.90963 0.90581 0.85420 0.85648 0.94024 0.94017 0.85307 0.85313 0.90698 0.87481 0.91412 0.90948 0.92704 0.91890 0.90693 0.95587 0.96020 0.94348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.53 10.24 71.98 0.74 0.20 16 2 C 0.10 0.38 5.93 86.38 0.51 0.89 16 3 N -0.61 -7.91 2.47 -821.84 -2.03 -9.94 16 4 C 0.11 1.39 6.13 86.38 0.53 1.92 16 5 C -0.16 -2.00 10.24 71.98 0.74 -1.27 16 6 C 0.50 9.99 7.67 87.66 0.67 10.66 16 7 O -0.59 -19.07 15.56 -3.05 -0.05 -19.12 16 8 C -0.13 -1.52 4.25 29.85 0.13 -1.40 16 9 C -0.09 -1.83 3.79 30.60 0.12 -1.71 16 10 C -0.12 -1.90 4.26 29.85 0.13 -1.77 16 11 C 0.50 14.23 7.67 87.66 0.67 14.90 16 12 O -0.59 -23.88 15.48 -3.04 -0.05 -23.92 16 13 N -0.61 -16.64 2.87 -846.76 -2.43 -19.08 16 14 C 0.07 1.10 10.26 127.77 1.31 2.41 16 15 C 0.13 4.76 5.42 86.38 0.47 5.23 16 16 C 0.14 5.94 4.31 41.88 0.18 6.12 16 17 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 18 C -0.13 -5.92 8.03 31.02 0.25 -5.67 16 19 C 0.15 8.09 7.22 83.18 0.60 8.69 16 20 N -0.63 -33.96 3.64 -713.36 -2.59 -36.55 16 21 C -0.22 -12.82 10.55 84.03 0.89 -11.94 16 22 H 0.09 4.81 7.83 -2.91 -0.02 4.79 16 23 C -0.07 -4.32 5.50 84.86 0.47 -3.85 16 24 N -0.96 -60.60 11.73 21.65 0.25 -60.35 16 25 Si 0.98 46.93 29.55 68.60 2.03 48.96 16 26 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 27 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 28 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 29 H 0.09 -0.03 8.14 -2.39 -0.02 -0.05 16 30 H 0.05 0.26 7.22 -2.39 -0.02 0.24 16 31 H 0.05 0.25 8.14 -2.39 -0.02 0.23 16 32 H 0.10 0.10 8.07 -2.39 -0.02 0.08 16 33 H 0.10 0.03 6.44 -2.39 -0.02 0.02 16 34 H 0.10 0.74 8.07 -2.39 -0.02 0.72 16 35 H 0.05 1.03 7.42 -2.38 -0.02 1.01 16 36 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.07 0.63 8.14 -2.39 -0.02 0.62 16 38 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.13 0.69 7.40 -2.39 -0.02 0.67 16 40 H 0.13 0.72 7.19 -2.38 -0.02 0.71 16 41 H 0.04 1.17 8.06 -2.39 -0.02 1.15 16 42 H 0.04 1.19 8.06 -2.38 -0.02 1.17 16 43 H 0.13 1.13 7.40 -2.39 -0.02 1.11 16 44 H 0.13 1.09 8.11 -2.39 -0.02 1.07 16 45 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.11 0.86 6.45 -2.39 -0.02 0.84 16 47 H 0.07 1.18 8.07 -2.39 -0.02 1.17 16 48 H 0.07 2.64 8.11 -2.39 -0.02 2.62 16 49 H 0.05 2.41 7.00 -2.38 -0.02 2.40 16 50 H 0.06 3.01 7.95 -2.39 -0.02 2.99 16 51 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 52 H 0.03 1.52 7.50 -2.39 -0.02 1.50 16 53 H 0.02 1.15 8.14 -2.38 -0.02 1.13 16 54 H 0.25 15.20 8.31 -92.70 -0.77 14.43 16 Total: -1.00 -90.40 432.05 4.37 -86.03 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: 0.85 Total: 10.56 kcal Atomic # 6 Polarization: 15.02 SS G_CDS: 8.39 Total: 23.41 kcal Atomic # 7 Polarization: -119.11 SS G_CDS: -6.81 Total: -125.91 kcal Atomic # 8 Polarization: -42.95 SS G_CDS: -0.09 Total: -43.04 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Total: -90.40 4.37 -86.03 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264374143.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.711 kcal (2) G-P(sol) polarization free energy of solvation -90.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds