Wall clock time and date at job start Sat Apr 11 2020 05:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46902 * 109.47320 * 2 1 4 4 C 1.47016 * 110.99932 * 287.89817 * 3 2 1 5 5 C 1.53099 * 109.26125 * 177.60551 * 4 3 2 6 6 O 1.43013 * 109.25768 * 56.84389 * 5 4 3 7 7 C 1.43028 * 113.77810 * 301.35636 * 6 5 4 8 8 C 1.47014 * 111.00481 * 164.26065 * 3 2 1 9 9 H 1.09003 * 109.50565 * 62.41068 * 8 3 2 10 10 C 1.50699 * 109.50128 * 302.32750 * 8 3 2 11 11 O 1.21275 * 120.00666 * 336.95999 * 10 8 3 12 12 N 1.34788 * 119.99467 * 156.96267 * 10 8 3 13 13 C 1.46925 * 120.62778 * 175.10545 * 12 10 8 14 14 C 1.53188 * 108.89623 * 126.29662 * 13 12 10 15 15 C 1.53354 * 109.14663 * 54.57331 * 14 13 12 16 16 C 1.53002 * 109.41648 * 178.67299 * 15 14 13 17 17 H 1.09004 * 109.46514 * 60.13471 * 16 15 14 18 18 C 1.52997 * 109.46772 * 180.12726 * 16 15 14 19 19 N 1.46497 * 109.47574 * 300.13167 * 16 15 14 20 20 C 1.36932 * 120.00045 * 154.99993 * 19 16 15 21 21 H 1.08000 * 119.99821 * 359.97438 * 20 19 16 22 22 C 1.38817 * 119.99914 * 180.02562 * 20 19 16 23 23 N 1.31621 * 119.99819 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00012 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47002 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47176 * 119.99897 * 24 22 20 27 27 H 1.48503 * 109.47220 * 240.00091 * 24 22 20 28 28 C 1.53040 * 109.61109 * 298.71762 * 15 14 13 29 29 C 1.46920 * 120.62961 * 355.08099 * 12 10 8 30 30 H 1.09006 * 109.46767 * 299.99894 * 1 2 3 31 31 H 1.09000 * 109.47174 * 59.99811 * 1 2 3 32 32 H 1.08998 * 109.46773 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47209 * 240.00280 * 2 1 3 34 34 H 1.09003 * 109.47479 * 119.99765 * 2 1 3 35 35 H 1.09002 * 109.50542 * 297.53954 * 4 3 2 36 36 H 1.08999 * 109.51029 * 57.62696 * 4 3 2 37 37 H 1.09000 * 109.50952 * 176.78188 * 5 4 3 38 38 H 1.09008 * 109.50407 * 296.86995 * 5 4 3 39 39 H 1.08994 * 109.47328 * 298.69184 * 7 6 5 40 40 H 1.09000 * 109.54601 * 178.55855 * 7 6 5 41 41 H 1.09003 * 109.58154 * 246.15721 * 13 12 10 42 42 H 1.09001 * 109.58832 * 6.43414 * 13 12 10 43 43 H 1.08998 * 109.49895 * 174.65266 * 14 13 12 44 44 H 1.09004 * 109.49853 * 294.75678 * 14 13 12 45 45 H 1.09008 * 109.41660 * 58.75265 * 15 14 13 46 46 H 1.08992 * 109.47807 * 300.00397 * 18 16 15 47 47 H 1.09005 * 109.47510 * 60.00949 * 18 16 15 48 48 H 1.09005 * 109.47225 * 180.02562 * 18 16 15 49 49 H 0.97003 * 119.99625 * 334.99873 * 19 16 15 50 50 H 0.97000 * 119.99509 * 179.97438 * 23 22 20 51 51 H 1.09009 * 109.49159 * 301.42274 * 28 15 14 52 52 H 1.08999 * 109.52369 * 181.34206 * 28 15 14 53 53 H 1.08996 * 109.59053 * 353.41459 * 29 12 10 54 54 H 1.09004 * 109.58409 * 113.70629 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7976 2.0223 -1.3061 5 6 2.2665 3.4784 -1.2438 6 8 3.6410 3.5149 -0.8501 7 6 3.8942 2.9030 0.4176 8 6 3.4408 1.4414 0.3723 9 1 4.0322 0.8995 -0.3658 10 6 3.6308 0.8133 1.7289 11 8 2.6983 0.7440 2.5011 12 7 4.8373 0.3286 2.0840 13 6 5.0665 -0.1891 3.4398 14 6 5.6326 -1.6090 3.3396 15 6 6.8822 -1.5907 2.4509 16 6 7.4719 -3.0004 2.3733 17 1 6.7342 -3.6798 1.9464 18 6 8.7207 -2.9828 1.4895 19 7 7.8324 -3.4537 3.7190 20 6 7.8885 -4.7931 3.9980 21 1 7.6666 -5.5153 3.2262 22 6 8.2295 -5.2227 5.2733 23 7 8.4993 -4.3425 6.2139 24 14 8.3053 -7.0498 5.6542 25 1 7.9605 -7.8244 4.4350 26 1 9.6772 -7.4068 6.0964 27 1 7.3378 -7.3709 6.7341 28 6 6.5059 -1.1173 1.0451 29 6 5.9480 0.3073 1.1225 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.3629 1.4904 -2.0714 36 1 0.7358 1.9914 -1.5504 37 1 2.1568 3.9385 -2.2258 38 1 1.6645 4.0238 -0.5169 39 1 3.3406 3.4319 1.1934 40 1 4.9610 2.9465 0.6370 41 1 5.7779 0.4521 3.9603 42 1 4.1242 -0.2092 3.9874 43 1 5.8952 -1.9671 4.3350 44 1 4.8842 -2.2689 2.9006 45 1 7.6203 -0.9112 2.8774 46 1 8.4526 -2.6455 0.4883 47 1 9.4585 -2.3034 1.9163 48 1 9.1406 -3.9872 1.4338 49 1 8.0313 -2.8051 4.4122 50 1 8.7373 -4.6428 7.1051 51 1 5.7494 -1.7820 0.6278 52 1 7.3904 -1.1275 0.4082 53 1 5.5870 0.6122 0.1403 54 1 6.7303 0.9908 1.4528 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267190162.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:57 Heat of formation + Delta-G solvation = -80.853331 kcal Electronic energy + Delta-G solvation = -31647.677414 eV Core-core repulsion = 27618.927754 eV Total energy + Delta-G solvation = -4028.749660 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.90151 -40.23570 -39.02009 -37.18836 -36.75371 -34.66515 -33.38195 -32.25472 -31.90744 -31.72389 -29.90013 -27.79566 -26.89859 -25.89149 -25.25872 -23.98480 -23.12883 -22.67065 -21.60920 -20.99866 -20.05563 -19.18110 -18.41049 -17.72914 -17.51497 -16.79358 -16.70082 -16.24900 -16.13222 -15.83872 -15.60975 -15.49453 -15.39258 -15.20145 -14.96275 -14.74063 -14.31735 -14.26492 -14.10609 -13.86823 -13.56029 -13.38630 -13.18070 -13.01862 -12.90896 -12.86932 -12.80582 -12.72344 -12.42393 -12.29700 -12.18277 -12.09139 -11.92120 -11.83085 -11.59169 -11.48932 -11.30303 -11.23944 -10.97561 -10.89031 -10.56663 -9.67444 -9.41964 -8.95413 -7.92565 -5.18478 1.45346 1.46026 1.46250 1.55138 1.82076 2.56349 2.61255 2.85357 3.40069 3.41782 3.66377 3.67265 3.83315 3.87779 3.89230 3.91903 4.03265 4.13292 4.21607 4.23278 4.33467 4.35045 4.39125 4.45470 4.50988 4.56134 4.59409 4.60574 4.65313 4.73298 4.77670 4.81505 4.89116 4.92108 4.92982 4.94878 5.00601 5.03967 5.10244 5.15711 5.24115 5.28033 5.31819 5.49367 5.51582 5.62122 5.69169 5.77535 5.92831 6.02811 6.30910 6.38091 7.10374 7.36983 8.16131 8.37949 9.31031 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.019382 B = 0.002497 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.260329 B =11211.343810 C =11680.930607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.049 3.951 3 N -0.532 5.532 4 C 0.019 3.981 5 C 0.057 3.943 6 O -0.386 6.386 7 C 0.082 3.918 8 C 0.037 3.963 9 H 0.087 0.913 10 C 0.518 3.482 11 O -0.563 6.563 12 N -0.604 5.604 13 C 0.120 3.880 14 C -0.111 4.111 15 C -0.079 4.079 16 C 0.171 3.829 17 H 0.031 0.969 18 C -0.156 4.156 19 N -0.733 5.733 20 C -0.229 4.229 21 H 0.069 0.931 22 C -0.076 4.076 23 N -0.968 5.968 24 Si 0.964 3.036 25 H -0.269 1.269 26 H -0.295 1.295 27 H -0.297 1.297 28 C -0.121 4.121 29 C 0.102 3.898 30 H 0.047 0.953 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.043 0.957 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.106 0.894 37 H 0.127 0.873 38 H 0.058 0.942 39 H 0.053 0.947 40 H 0.122 0.878 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.056 0.944 44 H 0.043 0.957 45 H 0.072 0.928 46 H 0.078 0.922 47 H 0.045 0.955 48 H 0.028 0.972 49 H 0.373 0.627 50 H 0.249 0.751 51 H 0.059 0.941 52 H 0.103 0.897 53 H 0.107 0.893 54 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.124 17.404 -20.372 29.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.078 4.078 3 N -0.259 5.259 4 C -0.109 4.109 5 C -0.019 4.019 6 O -0.304 6.304 7 C 0.004 3.996 8 C -0.075 4.075 9 H 0.105 0.895 10 C 0.306 3.694 11 O -0.441 6.441 12 N -0.338 5.338 13 C -0.003 4.003 14 C -0.149 4.149 15 C -0.098 4.098 16 C 0.063 3.937 17 H 0.049 0.951 18 C -0.215 4.215 19 N -0.373 5.373 20 C -0.361 4.361 21 H 0.087 0.913 22 C -0.269 4.269 23 N -0.619 5.619 24 Si 0.794 3.206 25 H -0.193 1.193 26 H -0.222 1.222 27 H -0.224 1.224 28 C -0.159 4.159 29 C -0.020 4.020 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.124 0.876 37 H 0.145 0.855 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.140 0.860 41 H 0.098 0.902 42 H 0.088 0.912 43 H 0.075 0.925 44 H 0.062 0.938 45 H 0.090 0.910 46 H 0.097 0.903 47 H 0.064 0.936 48 H 0.047 0.953 49 H 0.205 0.795 50 H 0.058 0.942 51 H 0.078 0.922 52 H 0.122 0.878 53 H 0.125 0.875 54 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.765 17.519 -19.778 28.923 hybrid contribution 0.459 -1.951 0.951 2.219 sum -11.306 15.568 -18.827 26.920 Atomic orbital electron populations 1.21653 0.93409 1.01995 1.02284 1.22127 0.97644 0.87901 1.00176 1.61986 1.14747 1.18774 1.30396 1.22971 1.03554 0.95831 0.88511 1.22919 0.81685 0.94968 1.02354 1.88010 1.27377 1.78661 1.36355 1.22517 1.02467 0.88179 0.86399 1.22350 0.91672 0.99469 0.94046 0.89533 1.20604 0.81884 0.77957 0.88985 1.90687 1.41115 1.58086 1.54220 1.48272 1.11307 1.60621 1.13566 1.21495 1.01063 0.94422 0.83283 1.21749 0.97171 0.95461 1.00535 1.21319 0.96009 0.96281 0.96222 1.20467 0.94258 0.93628 0.85314 0.95116 1.22342 0.98954 1.00320 0.99916 1.42599 1.82613 1.03603 1.08514 1.19573 1.36593 0.85181 0.94749 0.91258 1.25432 1.03884 1.01103 0.96440 1.69803 1.55833 1.33557 1.02755 0.85205 0.76621 0.81134 0.77648 1.19332 1.22188 1.22436 1.21968 1.02102 0.95863 0.95967 1.22137 0.88881 0.97825 0.93123 0.93367 0.91068 0.91690 0.93851 0.92924 0.93118 0.87578 0.85515 0.92380 0.92837 0.86048 0.90172 0.91233 0.92534 0.93844 0.90978 0.90293 0.93621 0.95321 0.79534 0.94249 0.92218 0.87839 0.87542 0.88782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.96 71.98 0.72 -1.67 16 2 C 0.05 1.01 5.32 86.30 0.46 1.47 16 3 N -0.53 -10.44 4.22 -874.38 -3.69 -14.14 16 4 C 0.02 0.24 5.47 86.31 0.47 0.72 16 5 C 0.06 0.70 7.01 72.02 0.50 1.21 16 6 O -0.39 -6.30 10.82 -148.98 -1.61 -7.91 16 7 C 0.08 1.37 6.28 72.01 0.45 1.82 16 8 C 0.04 0.70 1.59 44.18 0.07 0.77 16 9 H 0.09 1.39 6.14 -2.39 -0.01 1.38 16 10 C 0.52 13.18 5.79 87.65 0.51 13.69 16 11 O -0.56 -19.20 14.65 -3.01 -0.04 -19.25 16 12 N -0.60 -13.88 2.97 -818.92 -2.44 -16.32 16 13 C 0.12 3.32 6.43 86.36 0.56 3.88 16 14 C -0.11 -3.57 5.24 30.78 0.16 -3.41 16 15 C -0.08 -2.25 1.79 -10.66 -0.02 -2.27 16 16 C 0.17 6.28 2.47 44.99 0.11 6.39 16 17 H 0.03 1.21 8.08 -2.38 -0.02 1.19 16 18 C -0.16 -4.98 9.14 71.98 0.66 -4.33 16 19 N -0.73 -35.58 4.41 -322.94 -1.42 -37.01 16 20 C -0.23 -12.55 9.93 84.04 0.83 -11.72 16 21 H 0.07 3.72 7.83 -2.91 -0.02 3.70 16 22 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 23 N -0.97 -59.03 13.06 21.65 0.28 -58.74 16 24 Si 0.96 46.57 29.55 68.60 2.03 48.59 16 25 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 26 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 27 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 28 C -0.12 -2.39 5.05 30.67 0.15 -2.23 16 29 C 0.10 1.64 6.13 86.36 0.53 2.17 16 30 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.07 0.94 6.73 -2.39 -0.02 0.93 16 32 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.04 0.77 8.05 -2.39 -0.02 0.75 16 34 H 0.05 1.43 5.80 -2.39 -0.01 1.42 16 35 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.11 1.10 6.63 -2.39 -0.02 1.08 16 37 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 39 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.12 1.55 7.96 -2.39 -0.02 1.53 16 41 H 0.08 2.02 8.14 -2.39 -0.02 2.01 16 42 H 0.07 2.21 7.00 -2.39 -0.02 2.20 16 43 H 0.06 2.22 7.42 -2.39 -0.02 2.21 16 44 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 46 H 0.08 1.87 6.40 -2.39 -0.02 1.86 16 47 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 48 H 0.03 1.03 8.14 -2.38 -0.02 1.01 16 49 H 0.37 19.48 7.59 -92.71 -0.70 18.78 16 50 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 51 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 52 H 0.10 1.63 6.36 -2.39 -0.02 1.61 16 53 H 0.11 1.23 5.41 -2.39 -0.01 1.21 16 54 H 0.09 1.21 8.14 -2.38 -0.02 1.20 16 Total: -1.00 -71.39 405.66 -0.09 -71.48 By element: Atomic # 1 Polarization: 30.55 SS G_CDS: 0.18 Total: 30.73 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: 6.63 Total: 2.56 kcal Atomic # 7 Polarization: -118.94 SS G_CDS: -7.27 Total: -126.20 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -1.66 Total: -27.16 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.59 kcal Total: -71.39 -0.09 -71.48 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267190162.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.371 kcal (2) G-P(sol) polarization free energy of solvation -71.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds