Wall clock time and date at job start Sat Apr 11 2020 05:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46897 * 109.47282 * 2 1 4 4 C 1.47019 * 111.00070 * 46.36512 * 3 2 1 5 5 C 1.53097 * 109.25878 * 182.39511 * 4 3 2 6 6 O 1.43019 * 109.25505 * 303.15404 * 5 4 3 7 7 C 1.43015 * 113.74308 * 58.66966 * 6 5 4 8 8 C 1.47016 * 111.00094 * 169.99977 * 3 2 1 9 9 H 1.08993 * 109.54520 * 297.56123 * 8 3 2 10 10 C 1.50697 * 109.50482 * 57.67398 * 8 3 2 11 11 O 1.21286 * 120.00296 * 17.50479 * 10 8 3 12 12 N 1.34779 * 119.99888 * 197.50447 * 10 8 3 13 13 C 1.46932 * 120.62973 * 174.36830 * 12 10 8 14 14 C 1.53190 * 108.88839 * 233.68115 * 13 12 10 15 15 C 1.53040 * 109.31162 * 305.29008 * 14 13 12 16 16 C 1.53007 * 109.45824 * 181.38987 * 15 14 13 17 17 N 1.46498 * 109.47042 * 175.00132 * 16 15 14 18 18 C 1.46500 * 120.00189 * 269.99787 * 17 16 15 19 19 C 1.36934 * 119.99874 * 90.00256 * 17 16 15 20 20 H 1.08002 * 120.00195 * 23.18212 * 19 17 16 21 21 C 1.38817 * 119.99754 * 203.18414 * 19 17 16 22 22 N 1.31618 * 120.00045 * 14.18166 * 21 19 17 23 23 Si 1.86801 * 119.99998 * 194.17783 * 21 19 17 24 24 H 1.48500 * 109.47051 * 89.99825 * 23 21 19 25 25 H 1.48494 * 109.47490 * 210.00234 * 23 21 19 26 26 H 1.48510 * 109.47099 * 330.00256 * 23 21 19 27 27 C 1.53034 * 109.53753 * 61.37322 * 15 14 13 28 28 C 1.47202 * 120.81353 * 354.50906 * 12 10 8 29 29 H 1.09004 * 109.47387 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47068 * 300.00109 * 1 2 3 31 31 H 1.08991 * 109.47415 * 59.99553 * 1 2 3 32 32 H 1.09004 * 109.47068 * 239.99891 * 2 1 3 33 33 H 1.09003 * 109.46966 * 119.99922 * 2 1 3 34 34 H 1.08997 * 109.50665 * 62.45826 * 4 3 2 35 35 H 1.08999 * 109.53794 * 302.34953 * 4 3 2 36 36 H 1.08998 * 109.50833 * 183.21967 * 5 4 3 37 37 H 1.08998 * 109.50794 * 63.08544 * 5 4 3 38 38 H 1.09000 * 109.50703 * 181.39480 * 7 6 5 39 39 H 1.08997 * 109.50375 * 61.26430 * 7 6 5 40 40 H 1.08993 * 109.58589 * 113.81824 * 13 12 10 41 41 H 1.09001 * 109.58630 * 353.53954 * 13 12 10 42 42 H 1.08995 * 109.50069 * 65.25177 * 14 13 12 43 43 H 1.09008 * 109.49353 * 185.30974 * 14 13 12 44 44 H 1.08998 * 109.45968 * 301.34598 * 15 14 13 45 45 H 1.08998 * 109.47034 * 295.00550 * 16 15 14 46 46 H 1.09005 * 109.46895 * 55.00259 * 16 15 14 47 47 H 1.09001 * 109.46966 * 95.22091 * 18 17 16 48 48 H 1.08995 * 109.47232 * 215.22893 * 18 17 16 49 49 H 1.08998 * 109.47131 * 335.22849 * 18 17 16 50 50 H 0.97001 * 119.99469 * 179.97438 * 22 21 19 51 51 H 1.09003 * 109.50009 * 58.57978 * 27 15 14 52 52 H 1.08997 * 109.49982 * 178.68050 * 27 15 14 53 53 H 1.09000 * 109.53384 * 6.53579 * 28 12 10 54 54 H 1.09002 * 109.67767 * 246.22769 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.3023 2.1974 0.9934 5 6 1.8009 3.6430 0.9183 6 8 3.2164 3.6649 1.1212 7 6 3.9464 2.8844 0.1708 8 6 3.4696 1.4311 0.2383 9 1 3.6904 1.0210 1.2238 10 6 4.1788 0.6195 -0.8149 11 8 3.6049 0.3250 -1.8421 12 7 5.4507 0.2208 -0.6155 13 6 6.1143 -0.6727 -1.5748 14 6 6.6660 -1.8871 -0.8215 15 6 7.5703 -1.4087 0.3167 16 6 8.1508 -2.6198 1.0498 17 7 9.1082 -2.1655 2.0613 18 6 10.5223 -2.0072 1.7128 19 6 8.6813 -1.8889 3.3327 20 1 7.7725 -2.3369 3.7067 21 6 9.4166 -1.0326 4.1408 22 7 10.3542 -0.2738 3.6141 23 14 9.0753 -0.9572 5.9759 24 1 9.9265 -1.9504 6.6788 25 1 9.3835 0.4047 6.4812 26 1 7.6445 -1.2661 6.2264 27 6 6.7550 -0.5622 1.2968 28 6 6.2042 0.6674 0.5676 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.4878 1.7998 1.9911 35 1 0.2331 2.1698 0.7834 36 1 1.3132 4.2368 1.6914 37 1 1.5672 4.0582 -0.0620 38 1 5.0104 2.9295 0.4033 39 1 3.7752 3.2775 -0.8312 40 1 6.9323 -0.1425 -2.0624 41 1 5.3950 -1.0033 -2.3241 42 1 5.8395 -2.4667 -0.4106 43 1 7.2414 -2.5097 -1.5069 44 1 8.3829 -0.8087 -0.0929 45 1 7.3453 -3.1719 1.5339 46 1 8.6576 -3.2684 0.3352 47 1 10.7161 -0.9689 1.4435 48 1 11.1402 -2.2823 2.5675 49 1 10.7627 -2.6525 0.8679 50 1 10.8677 0.3248 4.1788 51 1 5.9275 -1.1542 1.6879 52 1 7.3941 -0.2413 2.1193 53 1 5.5424 1.2211 1.2335 54 1 7.0295 1.3081 0.2568 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664880141.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:36 Heat of formation + Delta-G solvation = -61.343778 kcal Electronic energy + Delta-G solvation = -32191.631113 eV Core-core repulsion = 28163.727450 eV Total energy + Delta-G solvation = -4027.903662 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -41.91454 -40.19238 -38.89342 -37.35073 -36.90963 -34.62063 -33.30620 -32.38512 -31.80151 -31.61294 -28.61664 -27.88863 -27.70694 -26.12817 -24.76796 -24.14796 -23.28995 -22.65019 -21.75871 -20.94779 -20.04597 -18.63531 -18.47051 -17.73885 -17.48228 -16.84354 -16.71528 -16.34545 -16.02646 -15.97397 -15.65054 -15.50555 -15.38401 -15.19005 -14.95931 -14.77380 -14.55909 -14.26605 -13.97306 -13.93394 -13.62721 -13.27579 -13.14279 -12.99160 -12.85239 -12.79368 -12.64453 -12.49068 -12.42974 -12.20655 -12.17414 -12.09192 -11.95242 -11.89415 -11.69797 -11.62324 -11.25255 -11.20237 -11.01895 -10.57248 -10.52553 -9.70052 -9.45873 -8.68742 -7.75616 -5.21641 1.41804 1.47040 1.50137 1.56271 1.81702 2.54811 2.58888 2.81075 3.35757 3.38221 3.62490 3.71079 3.77504 3.86789 3.91938 4.01134 4.04693 4.14595 4.17862 4.20614 4.27348 4.33421 4.38261 4.43863 4.49157 4.54320 4.58948 4.60554 4.72855 4.77131 4.82937 4.87888 4.88463 4.91440 4.93183 5.04754 5.07536 5.10647 5.13639 5.20586 5.24020 5.37827 5.40483 5.62227 5.70804 5.72209 5.75578 5.79133 5.89980 5.99527 6.32797 6.40014 7.05888 7.22615 7.95178 8.39629 9.26802 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012141 B = 0.003393 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.743483 B = 8250.035023 C = 9341.180749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.044 3.956 3 N -0.525 5.525 4 C 0.013 3.987 5 C 0.055 3.945 6 O -0.391 6.391 7 C 0.079 3.921 8 C 0.034 3.966 9 H 0.070 0.930 10 C 0.524 3.476 11 O -0.555 6.555 12 N -0.603 5.603 13 C 0.115 3.885 14 C -0.115 4.115 15 C -0.094 4.094 16 C 0.154 3.846 17 N -0.614 5.614 18 C 0.176 3.824 19 C -0.243 4.243 20 H 0.064 0.936 21 C -0.044 4.044 22 N -0.932 5.932 23 Si 0.950 3.050 24 H -0.292 1.292 25 H -0.297 1.297 26 H -0.271 1.271 27 C -0.111 4.111 28 C 0.111 3.889 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.023 0.977 34 H 0.041 0.959 35 H 0.117 0.883 36 H 0.126 0.874 37 H 0.065 0.935 38 H 0.110 0.890 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.058 0.942 43 H 0.090 0.910 44 H 0.052 0.948 45 H 0.039 0.961 46 H 0.055 0.945 47 H 0.007 0.993 48 H 0.010 0.990 49 H 0.028 0.972 50 H 0.245 0.755 51 H 0.046 0.954 52 H 0.071 0.929 53 H 0.089 0.911 54 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.030 4.065 -8.536 19.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.083 4.083 3 N -0.251 5.251 4 C -0.114 4.114 5 C -0.021 4.021 6 O -0.310 6.310 7 C 0.001 3.999 8 C -0.078 4.078 9 H 0.088 0.912 10 C 0.311 3.689 11 O -0.433 6.433 12 N -0.337 5.337 13 C -0.007 4.007 14 C -0.154 4.154 15 C -0.115 4.115 16 C 0.029 3.971 17 N -0.337 5.337 18 C 0.030 3.970 19 C -0.373 4.373 20 H 0.082 0.918 21 C -0.239 4.239 22 N -0.579 5.579 23 Si 0.780 3.220 24 H -0.220 1.220 25 H -0.224 1.224 26 H -0.196 1.196 27 C -0.149 4.149 28 C -0.012 4.012 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.041 0.959 34 H 0.060 0.940 35 H 0.135 0.865 36 H 0.143 0.857 37 H 0.083 0.917 38 H 0.128 0.872 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.103 0.897 42 H 0.076 0.924 43 H 0.109 0.891 44 H 0.070 0.930 45 H 0.058 0.942 46 H 0.073 0.927 47 H 0.026 0.974 48 H 0.029 0.971 49 H 0.047 0.953 50 H 0.055 0.945 51 H 0.065 0.935 52 H 0.089 0.911 53 H 0.107 0.893 54 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -17.231 4.299 -9.315 20.054 hybrid contribution 0.514 -0.450 1.850 1.972 sum -16.717 3.850 -7.465 18.708 Atomic orbital electron populations 1.21850 0.92583 1.02902 1.02829 1.22236 0.97663 0.88060 1.00337 1.62089 1.00938 1.12582 1.49526 1.23053 1.00914 0.94125 0.93346 1.22979 0.80193 0.95494 1.03443 1.88026 1.19692 1.69372 1.53865 1.22587 0.96963 0.86492 0.93835 1.22286 0.90547 0.98201 0.96800 0.91239 1.20352 0.81247 0.79816 0.87451 1.90634 1.66136 1.57709 1.28843 1.48313 1.12392 1.48086 1.24865 1.21634 0.97113 0.90673 0.91240 1.21859 0.99063 0.96965 0.97503 1.21597 0.96632 0.98286 0.94999 1.21009 0.91842 0.94021 0.90277 1.44138 1.03532 1.78172 1.07887 1.20531 0.84108 0.96830 0.95490 1.19285 1.08275 1.20174 0.89600 0.91841 1.25529 0.99953 0.97085 1.01361 1.70196 1.26565 1.26768 1.34332 0.85519 0.77969 0.76216 0.82288 1.21983 1.22361 1.19592 1.21713 0.98728 0.95869 0.98629 1.21964 0.96020 0.97099 0.86071 0.91146 0.91111 0.91731 0.91184 0.95859 0.94037 0.86488 0.85667 0.91705 0.87172 0.91848 0.90683 0.89711 0.92355 0.89123 0.92979 0.94234 0.92714 0.97426 0.97077 0.95331 0.94537 0.93526 0.91093 0.89315 0.90672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.18 71.98 0.66 -1.72 16 2 C 0.04 1.03 5.35 86.30 0.46 1.49 16 3 N -0.52 -12.30 4.42 -874.40 -3.87 -16.17 16 4 C 0.01 0.23 4.94 86.31 0.43 0.65 16 5 C 0.06 0.94 7.01 72.01 0.50 1.44 16 6 O -0.39 -9.04 10.83 -148.98 -1.61 -10.65 16 7 C 0.08 1.83 5.99 72.01 0.43 2.26 16 8 C 0.03 0.85 1.49 44.18 0.07 0.92 16 9 H 0.07 1.82 6.98 -2.39 -0.02 1.80 16 10 C 0.52 15.05 6.32 87.66 0.55 15.60 16 11 O -0.55 -18.79 14.07 -3.05 -0.04 -18.83 16 12 N -0.60 -16.47 2.98 -818.18 -2.44 -18.91 16 13 C 0.12 2.95 6.41 86.36 0.55 3.50 16 14 C -0.12 -2.97 5.36 30.67 0.16 -2.80 16 15 C -0.09 -3.07 2.36 -10.77 -0.03 -3.09 16 16 C 0.15 5.74 5.21 86.38 0.45 6.19 16 17 N -0.61 -28.81 2.79 -726.93 -2.03 -30.84 16 18 C 0.18 8.30 9.03 127.77 1.15 9.45 16 19 C -0.24 -12.50 7.55 84.04 0.63 -11.86 16 20 H 0.06 3.24 7.86 -2.91 -0.02 3.22 16 21 C -0.04 -2.34 5.08 84.86 0.43 -1.90 16 22 N -0.93 -52.61 10.79 21.65 0.23 -52.38 16 23 Si 0.95 43.72 29.58 68.60 2.03 45.75 16 24 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 25 H -0.30 -13.83 7.11 99.48 0.71 -13.13 16 26 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 27 C -0.11 -3.81 4.96 30.67 0.15 -3.65 16 28 C 0.11 3.10 5.54 86.31 0.48 3.58 16 29 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 30 H 0.07 0.94 6.28 -2.38 -0.01 0.93 16 31 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.07 1.98 6.14 -2.38 -0.01 1.97 16 33 H 0.02 0.56 8.08 -2.39 -0.02 0.54 16 34 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.12 1.56 6.05 -2.39 -0.01 1.54 16 36 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.11 2.41 6.47 -2.39 -0.02 2.39 16 39 H 0.06 1.49 8.14 -2.39 -0.02 1.48 16 40 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.08 2.23 7.04 -2.39 -0.02 2.21 16 42 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 44 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.04 1.48 8.03 -2.39 -0.02 1.46 16 46 H 0.05 1.83 7.86 -2.38 -0.02 1.81 16 47 H 0.01 0.39 7.33 -2.39 -0.02 0.37 16 48 H 0.01 0.55 7.39 -2.39 -0.02 0.53 16 49 H 0.03 1.14 7.83 -2.39 -0.02 1.12 16 50 H 0.25 13.67 8.31 -92.71 -0.77 12.90 16 51 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 52 H 0.07 3.08 6.26 -2.39 -0.01 3.06 16 53 H 0.09 2.30 4.79 -2.39 -0.01 2.29 16 54 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -63.62 398.95 0.23 -63.40 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.86 Total: 18.57 kcal Atomic # 6 Polarization: 12.96 SS G_CDS: 7.10 Total: 20.06 kcal Atomic # 7 Polarization: -110.19 SS G_CDS: -8.11 Total: -118.29 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -1.66 Total: -29.48 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -63.62 0.23 -63.40 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664880141.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.053 kcal (2) G-P(sol) polarization free energy of solvation -63.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds