Wall clock time and date at job start Sat Apr 11 2020 05:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 H 1.08998 * 109.47521 * 2 1 4 4 N 1.46501 * 109.47227 * 119.99514 * 2 1 3 5 5 C 1.34771 * 120.00396 * 275.00282 * 4 2 1 6 6 O 1.21288 * 119.99883 * 359.97438 * 5 4 2 7 7 C 1.50700 * 120.00170 * 179.97438 * 5 4 2 8 8 C 1.53006 * 109.46970 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.47173 * 59.99736 * 8 7 5 10 10 C 1.52995 * 109.46916 * 179.97438 * 8 7 5 11 11 C 1.52999 * 109.46832 * 299.99724 * 8 7 5 12 12 C 1.50699 * 109.47582 * 239.99652 * 2 1 3 13 13 O 1.21286 * 120.00338 * 240.00494 * 12 2 1 14 14 N 1.34777 * 119.99999 * 59.99769 * 12 2 1 15 15 C 1.46506 * 119.99927 * 0.02562 * 14 12 2 16 16 C 1.46504 * 120.00336 * 180.02562 * 14 12 2 17 17 H 1.08999 * 110.63411 * 50.54814 * 16 14 12 18 18 C 1.55149 * 110.72331 * 287.21232 * 16 14 12 19 19 C 1.54911 * 101.58185 * 277.13978 * 18 16 14 20 20 N 1.47422 * 104.83057 * 322.98525 * 19 18 16 21 21 C 1.36936 * 125.65264 * 204.16579 * 20 19 18 22 22 H 1.07998 * 120.00277 * 179.97438 * 21 20 19 23 23 C 1.38814 * 119.99777 * 359.96116 * 21 20 19 24 24 N 1.31621 * 120.00042 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00036 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47494 * 89.99905 * 25 23 21 27 27 H 1.48498 * 109.47281 * 209.99764 * 25 23 21 28 28 H 1.48505 * 109.47304 * 329.99781 * 25 23 21 29 29 C 1.47022 * 108.70169 * 24.13410 * 20 19 18 30 30 H 1.09007 * 109.47336 * 60.00222 * 1 2 3 31 31 H 1.08998 * 109.47521 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47520 * 300.00419 * 1 2 3 33 33 H 0.97003 * 119.99578 * 95.00239 * 4 2 1 34 34 H 1.09000 * 109.47091 * 299.99426 * 7 5 4 35 35 H 1.08993 * 109.46996 * 59.99946 * 7 5 4 36 36 H 1.09001 * 109.47013 * 60.00464 * 9 8 7 37 37 H 1.08996 * 109.46941 * 179.97438 * 9 8 7 38 38 H 1.09000 * 109.47288 * 300.00323 * 9 8 7 39 39 H 1.09001 * 109.47208 * 59.99582 * 10 8 7 40 40 H 1.08996 * 109.47126 * 179.97438 * 10 8 7 41 41 H 1.09001 * 109.47455 * 299.99650 * 10 8 7 42 42 H 1.09000 * 109.47436 * 60.00130 * 11 8 7 43 43 H 1.09000 * 109.46879 * 179.97438 * 11 8 7 44 44 H 1.09001 * 109.47096 * 300.00298 * 11 8 7 45 45 H 1.08989 * 109.47060 * 264.85128 * 15 14 12 46 46 H 1.09001 * 109.46681 * 24.85057 * 15 14 12 47 47 H 1.09003 * 109.46879 * 144.84497 * 15 14 12 48 48 H 1.09008 * 111.00196 * 35.20992 * 18 16 14 49 49 H 1.08994 * 111.00645 * 159.06013 * 18 16 14 50 50 H 1.09001 * 110.36844 * 204.14972 * 19 18 16 51 51 H 1.08994 * 110.46445 * 81.87169 * 19 18 16 52 52 H 0.96995 * 120.00070 * 179.97438 * 24 23 21 53 53 H 1.09001 * 109.88192 * 239.51894 * 29 20 19 54 54 H 1.08995 * 110.01478 * 118.42768 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6905 1.1962 5 6 2.1469 -0.0182 2.3571 6 8 1.8589 1.1588 2.4115 7 6 2.6488 -0.7287 3.5878 8 6 2.6997 0.2544 4.7591 9 6 1.2970 0.8049 5.0243 10 6 3.2085 -0.4670 6.0086 11 6 3.6439 1.4083 4.4157 12 6 2.0323 -0.7105 -1.2304 13 8 2.7296 -1.6966 -1.1191 14 7 1.7068 -0.2501 -2.4545 15 6 0.8649 0.9413 -2.5891 16 6 2.1947 -0.9411 -3.6507 17 1 1.9848 -2.0089 -3.5899 18 6 3.7119 -0.6864 -3.8513 19 6 3.7048 0.6877 -4.5666 20 7 2.5320 0.6425 -5.4587 21 6 2.3656 1.3860 -6.5965 22 1 1.4660 1.2794 -7.1845 23 6 3.3531 2.2769 -6.9941 24 7 4.4491 2.4074 -6.2771 25 14 3.1258 3.2917 -8.5458 26 1 2.4551 4.5724 -8.2061 27 1 4.4519 3.5731 -9.1519 28 1 2.2897 2.5365 -9.5132 29 6 1.5708 -0.3336 -4.9248 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 2.2490 -1.6317 1.1527 34 1 1.9758 -1.5504 3.8327 35 1 3.6478 -1.1212 3.3986 36 1 0.6244 -0.0172 5.2690 37 1 1.3333 1.5049 5.8590 38 1 0.9341 1.3188 4.1341 39 1 4.2078 -0.8596 5.8199 40 1 3.2453 0.2334 6.8429 41 1 2.5355 -1.2889 6.2531 42 1 3.2810 1.9222 3.5256 43 1 3.6799 2.1089 5.2500 44 1 4.6432 1.0161 4.2267 45 1 -0.1748 0.6392 -2.7141 46 1 0.9596 1.5560 -1.6939 47 1 1.1837 1.5151 -3.4592 48 1 4.2279 -0.6252 -2.8930 49 1 4.1567 -1.4542 -4.4843 50 1 4.6181 0.8179 -5.1471 51 1 3.5989 1.4943 -3.8413 52 1 5.1393 3.0297 -6.5550 53 1 1.3919 -1.1180 -5.6602 54 1 0.6328 0.1634 -4.6776 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665675874.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:42 Heat of formation + Delta-G solvation = -59.048437 kcal Electronic energy + Delta-G solvation = -31263.178187 eV Core-core repulsion = 27235.374058 eV Total energy + Delta-G solvation = -4027.804129 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.83154 -40.88469 -39.09366 -37.58664 -36.26953 -35.84369 -34.11388 -32.16936 -31.09930 -29.26054 -28.81253 -28.08896 -28.07107 -27.98606 -26.41019 -25.09620 -22.56966 -21.91202 -21.39448 -20.31991 -19.66402 -18.95381 -18.47292 -18.04494 -17.32030 -16.98103 -16.69673 -16.37175 -16.21385 -15.65794 -15.57629 -15.29142 -15.19625 -15.01725 -14.54507 -14.45677 -14.23137 -13.87006 -13.75351 -13.61854 -13.46480 -13.21849 -13.05919 -12.92684 -12.90113 -12.78393 -12.71830 -12.63578 -12.56008 -12.25693 -12.17300 -12.05463 -11.99439 -11.97975 -11.80149 -11.60787 -11.53556 -11.50694 -10.85016 -10.73716 -10.47070 -10.12845 -9.66477 -8.89601 -7.76515 -5.21213 1.44881 1.48628 1.49647 1.58415 1.62217 1.76160 2.33408 2.50270 3.27707 3.35038 3.66981 3.71784 3.78494 3.86833 3.96185 4.02055 4.03439 4.07114 4.19036 4.27111 4.31997 4.56224 4.58645 4.61838 4.66031 4.67322 4.67733 4.70844 4.79055 4.87390 4.89657 4.90622 4.93865 4.99523 5.01663 5.06248 5.12075 5.19928 5.20692 5.21492 5.37314 5.40999 5.45905 5.54447 5.56510 5.59113 5.70445 5.78952 6.28597 6.32786 6.53676 6.99555 7.09859 7.28063 7.77318 8.41028 9.25480 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.020321 B = 0.002323 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.547813 B =12051.007867 C =12394.633696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.132 3.868 3 H 0.100 0.900 4 N -0.711 5.711 5 C 0.513 3.487 6 O -0.559 6.559 7 C -0.128 4.128 8 C -0.052 4.052 9 C -0.150 4.150 10 C -0.137 4.137 11 C -0.153 4.153 12 C 0.510 3.490 13 O -0.567 6.567 14 N -0.590 5.590 15 C 0.067 3.933 16 C 0.146 3.854 17 H 0.098 0.902 18 C -0.139 4.139 19 C 0.166 3.834 20 N -0.618 5.618 21 C -0.231 4.231 22 H 0.087 0.913 23 C -0.068 4.068 24 N -0.951 5.951 25 Si 0.979 3.021 26 H -0.287 1.287 27 H -0.299 1.299 28 H -0.267 1.267 29 C 0.127 3.873 30 H 0.092 0.908 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.414 0.586 34 H 0.117 0.883 35 H 0.106 0.894 36 H 0.057 0.943 37 H 0.050 0.950 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.067 0.933 42 H 0.057 0.943 43 H 0.052 0.948 44 H 0.049 0.951 45 H 0.089 0.911 46 H 0.086 0.914 47 H 0.062 0.938 48 H 0.060 0.940 49 H 0.071 0.929 50 H 0.067 0.933 51 H -0.015 1.015 52 H 0.245 0.755 53 H 0.043 0.957 54 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.430 -8.433 21.713 24.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.023 3.977 3 H 0.118 0.882 4 N -0.365 5.365 5 C 0.302 3.698 6 O -0.439 6.439 7 C -0.167 4.167 8 C -0.052 4.052 9 C -0.207 4.207 10 C -0.195 4.195 11 C -0.211 4.211 12 C 0.298 3.702 13 O -0.447 6.447 14 N -0.322 5.322 15 C -0.075 4.075 16 C 0.043 3.957 17 H 0.115 0.885 18 C -0.178 4.178 19 C 0.041 3.959 20 N -0.345 5.345 21 C -0.360 4.360 22 H 0.105 0.895 23 C -0.261 4.261 24 N -0.601 5.601 25 Si 0.808 3.192 26 H -0.214 1.214 27 H -0.226 1.226 28 H -0.192 1.192 29 C 0.002 3.998 30 H 0.111 0.889 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.251 0.749 34 H 0.135 0.865 35 H 0.124 0.876 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.068 0.932 45 H 0.108 0.892 46 H 0.105 0.895 47 H 0.080 0.920 48 H 0.078 0.922 49 H 0.090 0.910 50 H 0.085 0.915 51 H 0.003 0.997 52 H 0.055 0.945 53 H 0.061 0.939 54 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.201 -7.971 21.653 24.487 hybrid contribution 0.572 0.549 -1.133 1.383 sum -7.629 -7.422 20.519 23.116 Atomic orbital electron populations 1.22303 0.90983 1.03818 1.04671 1.20642 0.97076 0.96991 0.82959 0.88182 1.45879 1.67378 1.15012 1.08249 1.21249 0.76507 0.87119 0.84894 1.90593 1.50996 1.17233 1.85031 1.21845 1.04242 0.99606 0.91025 1.20296 0.96218 0.94568 0.94162 1.22047 0.95641 1.00974 1.02026 1.21851 1.01392 1.00326 0.95906 1.22080 0.98463 0.98389 1.02131 1.20866 0.79887 0.84476 0.84936 1.90648 1.39308 1.27983 1.86734 1.47802 1.50394 1.29113 1.04883 1.22220 0.95091 0.86592 1.03621 1.21883 0.93735 0.96233 0.83877 0.88465 1.23144 0.96065 0.98934 0.99676 1.21553 0.92563 0.91153 0.90646 1.44730 1.17888 1.45878 1.26004 1.19442 1.02481 1.14700 0.99355 0.89493 1.25621 0.96694 1.01542 1.02198 1.70072 1.09279 1.40081 1.40643 0.85063 0.76336 0.78589 0.79236 1.21444 1.22573 1.19216 1.21754 0.93362 0.92308 0.92417 0.88903 0.91192 0.90968 0.74899 0.86489 0.87573 0.92390 0.93042 0.92095 0.92074 0.92323 0.91445 0.92371 0.92864 0.93179 0.89231 0.89515 0.91961 0.92176 0.91028 0.91451 0.99675 0.94539 0.93887 0.92894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 9.08 71.98 0.65 -2.24 16 2 C 0.13 3.09 2.17 44.24 0.10 3.19 16 3 H 0.10 2.65 6.85 -2.39 -0.02 2.63 16 4 N -0.71 -14.94 4.95 -446.12 -2.21 -17.15 16 5 C 0.51 10.83 7.21 87.66 0.63 11.46 16 6 O -0.56 -15.11 11.01 -3.05 -0.03 -15.14 16 7 C -0.13 -1.83 4.77 29.85 0.14 -1.69 16 8 C -0.05 -0.81 0.77 -52.18 -0.04 -0.85 16 9 C -0.15 -2.55 8.17 71.98 0.59 -1.96 16 10 C -0.14 -1.53 8.47 71.98 0.61 -0.92 16 11 C -0.15 -2.98 8.18 71.98 0.59 -2.39 16 12 C 0.51 14.73 6.80 87.66 0.60 15.33 16 13 O -0.57 -19.03 15.18 -3.05 -0.05 -19.08 16 14 N -0.59 -17.58 2.98 -815.95 -2.43 -20.01 16 15 C 0.07 1.74 7.36 127.77 0.94 2.68 16 16 C 0.15 4.98 3.15 46.18 0.15 5.12 16 17 H 0.10 3.06 8.08 -2.39 -0.02 3.04 16 18 C -0.14 -5.55 6.56 31.98 0.21 -5.34 16 19 C 0.17 8.19 5.76 86.86 0.50 8.69 16 20 N -0.62 -30.12 3.05 -692.00 -2.11 -32.23 16 21 C -0.23 -12.31 10.27 84.03 0.86 -11.45 16 22 H 0.09 4.37 7.83 -2.91 -0.02 4.35 16 23 C -0.07 -3.77 5.49 84.86 0.47 -3.31 16 24 N -0.95 -56.31 10.09 21.65 0.22 -56.09 16 25 Si 0.98 44.76 29.55 68.60 2.03 46.79 16 26 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 27 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 28 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 29 C 0.13 4.75 6.03 86.73 0.52 5.28 16 30 H 0.09 1.50 4.62 -2.38 -0.01 1.49 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.41 7.90 7.79 -92.71 -0.72 7.18 16 34 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.06 1.36 5.51 -2.39 -0.01 1.35 16 39 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.06 1.47 5.51 -2.39 -0.01 1.45 16 43 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.09 1.78 7.19 -2.39 -0.02 1.76 16 46 H 0.09 1.96 5.62 -2.39 -0.01 1.95 16 47 H 0.06 2.11 6.32 -2.39 -0.02 2.10 16 48 H 0.06 2.43 7.36 -2.38 -0.02 2.41 16 49 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 50 H 0.07 3.86 5.87 -2.39 -0.01 3.85 16 51 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 52 H 0.24 14.22 8.31 -92.71 -0.77 13.45 16 53 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 54 H 0.05 1.83 5.96 -2.39 -0.01 1.81 16 Total: -1.00 -68.21 405.19 3.10 -65.11 By element: Atomic # 1 Polarization: 26.02 SS G_CDS: 0.17 Total: 26.19 kcal Atomic # 6 Polarization: 14.08 SS G_CDS: 7.51 Total: 21.60 kcal Atomic # 7 Polarization: -118.94 SS G_CDS: -6.53 Total: -125.47 kcal Atomic # 8 Polarization: -34.14 SS G_CDS: -0.08 Total: -34.22 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -68.21 3.10 -65.11 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665675874.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.064 kcal (2) G-P(sol) polarization free energy of solvation -68.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds