Wall clock time and date at job start Sat Apr 11 2020 05:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47323 * 2 1 4 4 N 1.46509 * 109.46834 * 119.99538 * 2 1 3 5 5 C 1.34776 * 120.00074 * 274.99915 * 4 2 1 6 6 O 1.21276 * 119.99934 * 0.02562 * 5 4 2 7 7 C 1.50693 * 119.99911 * 180.02562 * 5 4 2 8 8 C 1.52998 * 109.47101 * 180.02562 * 7 5 4 9 9 C 1.53004 * 109.47106 * 60.00079 * 8 7 5 10 10 C 1.53002 * 109.47350 * 180.02562 * 8 7 5 11 11 C 1.52997 * 109.47066 * 300.00091 * 8 7 5 12 12 C 1.50699 * 109.47338 * 239.99432 * 2 1 3 13 13 O 1.21287 * 120.00219 * 240.00232 * 12 2 1 14 14 N 1.34774 * 119.99905 * 60.00266 * 12 2 1 15 15 C 1.46498 * 119.99908 * 359.97438 * 14 12 2 16 16 C 1.46502 * 120.00052 * 180.02562 * 14 12 2 17 17 H 1.09002 * 110.78045 * 1.78188 * 16 14 12 18 18 C 1.55403 * 110.85533 * 125.08713 * 16 14 12 19 19 C 1.54908 * 101.66693 * 153.69982 * 18 16 14 20 20 N 1.47430 * 104.82850 * 323.06944 * 19 18 16 21 21 C 1.36940 * 125.64523 * 204.16467 * 20 19 18 22 22 H 1.07999 * 120.00020 * 161.47947 * 21 20 19 23 23 C 1.38813 * 119.99969 * 341.47526 * 21 20 19 24 24 N 1.31621 * 119.99597 * 157.62068 * 23 21 20 25 25 Si 1.86794 * 120.00222 * 337.62232 * 23 21 20 26 26 H 1.48507 * 109.47423 * 84.53407 * 25 23 21 27 27 H 1.48506 * 109.47201 * 204.53637 * 25 23 21 28 28 H 1.48505 * 109.47132 * 324.53466 * 25 23 21 29 29 C 1.47017 * 108.70406 * 24.13362 * 20 19 18 30 30 H 1.08994 * 109.47217 * 300.00466 * 1 2 3 31 31 H 1.08999 * 109.46759 * 60.00485 * 1 2 3 32 32 H 1.09002 * 109.47020 * 180.02562 * 1 2 3 33 33 H 0.96998 * 119.99863 * 95.00160 * 4 2 1 34 34 H 1.09000 * 109.47235 * 300.00065 * 7 5 4 35 35 H 1.09001 * 109.47496 * 60.00266 * 7 5 4 36 36 H 1.09000 * 109.47170 * 60.00076 * 9 8 7 37 37 H 1.08999 * 109.47240 * 179.97438 * 9 8 7 38 38 H 1.08999 * 109.46813 * 300.00009 * 9 8 7 39 39 H 1.08997 * 109.46908 * 60.00054 * 10 8 7 40 40 H 1.08999 * 109.47388 * 180.02562 * 10 8 7 41 41 H 1.09000 * 109.47104 * 300.00032 * 10 8 7 42 42 H 1.08998 * 109.47155 * 60.00243 * 11 8 7 43 43 H 1.09006 * 109.47284 * 179.97438 * 11 8 7 44 44 H 1.09001 * 109.47019 * 299.99526 * 11 8 7 45 45 H 1.09005 * 109.47317 * 270.00256 * 15 14 12 46 46 H 1.08995 * 109.47154 * 30.00091 * 15 14 12 47 47 H 1.09001 * 109.47049 * 150.00276 * 15 14 12 48 48 H 1.09001 * 110.89306 * 35.62216 * 18 16 14 49 49 H 1.09001 * 111.06423 * 271.84902 * 18 16 14 50 50 H 1.08999 * 110.36283 * 204.23683 * 19 18 16 51 51 H 1.08996 * 110.46142 * 81.96062 * 19 18 16 52 52 H 0.97002 * 119.99755 * 180.02562 * 24 23 21 53 53 H 1.09003 * 109.88316 * 118.35188 * 29 20 19 54 54 H 1.08997 * 109.88264 * 239.36558 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1470 -0.0181 2.3572 6 8 1.8582 1.1585 2.4117 7 6 2.6498 -0.7283 3.5875 8 6 2.7006 0.2547 4.7589 9 6 1.2976 0.8041 5.0247 10 6 3.2117 -0.4662 6.0079 11 6 3.6438 1.4093 4.4152 12 6 2.0324 -0.7105 -1.2304 13 8 2.7297 -1.6966 -1.1190 14 7 1.7069 -0.2501 -2.4545 15 6 0.8642 0.9407 -2.5890 16 6 2.1948 -0.9412 -3.6506 17 1 2.7777 -1.8210 -3.3782 18 6 1.0152 -1.3312 -4.5841 19 6 1.7118 -1.3766 -5.9669 20 7 2.6898 -0.2739 -5.9331 21 6 3.1988 0.3751 -7.0263 22 1 3.6648 1.3426 -6.9113 23 6 3.1160 -0.2106 -8.2821 24 7 3.1818 0.5378 -9.3628 25 14 2.9110 -2.0606 -8.4381 26 1 1.4721 -2.4106 -8.3260 27 1 3.4275 -2.5064 -9.7572 28 1 3.6705 -2.7359 -7.3553 29 6 3.0274 0.0141 -4.5315 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.2490 -1.6317 1.1528 34 1 1.9776 -1.5506 3.8327 35 1 3.6492 -1.1201 3.3981 36 1 0.6256 -0.0184 5.2696 37 1 1.3336 1.5041 5.8595 38 1 0.9339 1.3178 4.1348 39 1 4.2112 -0.8572 5.8182 40 1 3.2474 0.2340 6.8425 41 1 2.5400 -1.2890 6.2529 42 1 3.2801 1.9230 3.5253 43 1 3.6796 2.1099 5.2495 44 1 4.6433 1.0178 4.2259 45 1 -0.1837 0.6424 -2.6225 46 1 1.0273 1.5994 -1.7361 47 1 1.1220 1.4662 -3.5085 48 1 0.2355 -0.5697 -4.5641 49 1 0.6113 -2.3080 -4.3178 50 1 0.9852 -1.2149 -6.7632 51 1 2.2203 -2.3305 -6.1063 52 1 3.1235 0.1286 -10.2404 53 1 4.0904 -0.1585 -4.3633 54 1 2.7779 1.0484 -4.2951 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665675875.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:46 Heat of formation + Delta-G solvation = -64.145894 kcal Electronic energy + Delta-G solvation = -30843.427057 eV Core-core repulsion = 26815.401886 eV Total energy + Delta-G solvation = -4028.025171 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.82425 -40.87132 -39.30488 -37.60938 -36.52055 -35.88147 -34.33622 -32.42236 -31.22581 -29.71196 -28.85387 -28.06331 -28.05137 -27.98610 -26.46143 -25.01754 -22.77956 -22.26126 -21.39675 -20.44283 -19.78591 -19.00956 -18.64833 -17.96885 -17.36986 -17.17055 -16.82347 -16.40591 -16.16129 -15.85972 -15.42551 -15.35520 -15.30975 -15.14800 -14.82216 -14.70849 -14.34938 -14.10535 -13.81885 -13.74022 -13.56621 -13.46207 -13.14244 -13.08601 -12.99475 -12.90835 -12.76110 -12.63609 -12.61017 -12.48765 -12.33534 -12.17075 -12.10725 -11.98629 -11.66458 -11.60383 -11.50490 -11.49537 -10.92596 -10.83736 -10.46611 -10.13169 -9.73419 -9.10345 -8.20182 -5.47947 1.28558 1.38856 1.39601 1.46756 1.56591 1.72395 2.30284 2.39001 3.01546 3.22416 3.37022 3.66765 3.72407 3.76916 3.86614 3.96365 4.03828 4.07101 4.09777 4.20947 4.31979 4.35400 4.39026 4.56049 4.62391 4.66617 4.67259 4.70589 4.76077 4.80355 4.84391 4.87514 4.89106 4.90015 4.93827 5.00130 5.02154 5.12475 5.14814 5.20624 5.21697 5.22875 5.37177 5.40295 5.45538 5.56812 5.63622 5.70134 6.07303 6.26529 6.52549 6.71272 6.94013 7.27246 7.49641 8.04610 8.99211 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.029108 B = 0.002086 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.698059 B =13420.057378 C =13434.074777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.134 3.866 3 H 0.111 0.889 4 N -0.714 5.714 5 C 0.516 3.484 6 O -0.557 6.557 7 C -0.129 4.129 8 C -0.052 4.052 9 C -0.150 4.150 10 C -0.139 4.139 11 C -0.153 4.153 12 C 0.512 3.488 13 O -0.572 6.572 14 N -0.592 5.592 15 C 0.059 3.941 16 C 0.140 3.860 17 H 0.096 0.904 18 C -0.119 4.119 19 C 0.103 3.897 20 N -0.623 5.623 21 C -0.235 4.235 22 H 0.060 0.940 23 C -0.034 4.034 24 N -0.953 5.953 25 Si 0.944 3.056 26 H -0.263 1.263 27 H -0.308 1.308 28 H -0.275 1.275 29 C 0.125 3.875 30 H 0.072 0.928 31 H 0.098 0.902 32 H 0.065 0.935 33 H 0.413 0.587 34 H 0.115 0.885 35 H 0.106 0.894 36 H 0.055 0.945 37 H 0.050 0.950 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.051 0.949 44 H 0.049 0.951 45 H 0.090 0.910 46 H 0.096 0.904 47 H 0.072 0.928 48 H 0.094 0.906 49 H 0.097 0.903 50 H 0.051 0.949 51 H 0.022 0.978 52 H 0.263 0.737 53 H 0.019 0.981 54 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.106 -3.789 30.858 32.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.025 3.975 3 H 0.129 0.871 4 N -0.368 5.368 5 C 0.304 3.696 6 O -0.436 6.436 7 C -0.169 4.169 8 C -0.053 4.053 9 C -0.207 4.207 10 C -0.196 4.196 11 C -0.210 4.210 12 C 0.301 3.699 13 O -0.452 6.452 14 N -0.323 5.323 15 C -0.082 4.082 16 C 0.035 3.965 17 H 0.114 0.886 18 C -0.158 4.158 19 C -0.022 4.022 20 N -0.350 5.350 21 C -0.364 4.364 22 H 0.078 0.922 23 C -0.229 4.229 24 N -0.599 5.599 25 Si 0.773 3.227 26 H -0.188 1.188 27 H -0.236 1.236 28 H -0.201 1.201 29 C 0.000 4.000 30 H 0.091 0.909 31 H 0.116 0.884 32 H 0.084 0.916 33 H 0.250 0.750 34 H 0.133 0.867 35 H 0.124 0.876 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.068 0.932 45 H 0.109 0.891 46 H 0.114 0.886 47 H 0.091 0.909 48 H 0.112 0.888 49 H 0.115 0.885 50 H 0.069 0.931 51 H 0.040 0.960 52 H 0.072 0.928 53 H 0.037 0.963 54 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.915 -3.398 30.736 31.920 hybrid contribution 0.691 -0.944 -1.074 1.588 sum -7.224 -4.342 29.662 30.836 Atomic orbital electron populations 1.22334 0.90988 1.03734 1.04961 1.20686 0.97020 0.97297 0.82482 0.87097 1.45917 1.67432 1.15035 1.08391 1.21160 0.76495 0.87103 0.84799 1.90585 1.50910 1.17096 1.84976 1.21843 1.04203 0.99614 0.91223 1.20294 0.96260 0.94622 0.94080 1.22048 0.95598 1.00930 1.02097 1.21860 1.01346 1.00326 0.96054 1.22076 0.98403 0.98283 1.02214 1.21020 0.79466 0.84288 0.85173 1.90672 1.39642 1.28185 1.86670 1.47689 1.50624 1.29550 1.04394 1.22338 0.95274 0.86201 1.04369 1.21871 0.95586 0.95012 0.84010 0.88609 1.23040 0.96983 1.03523 0.92271 1.22069 0.91585 0.90480 0.98078 1.44790 1.48172 1.40444 1.01628 1.18543 1.33864 0.98959 0.85017 0.92195 1.25616 1.00855 1.01720 0.94727 1.69957 1.55699 1.36250 0.98010 0.85986 0.78798 0.82597 0.75333 1.18818 1.23614 1.20115 1.21704 0.96545 0.98057 0.83727 0.90927 0.88370 0.91627 0.75013 0.86723 0.87622 0.92567 0.93092 0.91870 0.92105 0.92356 0.91610 0.92076 0.92945 0.93196 0.89143 0.88604 0.90938 0.88776 0.88491 0.93108 0.96034 0.92772 0.96292 0.93457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 9.12 71.98 0.66 -1.55 16 2 C 0.13 2.44 2.18 44.24 0.10 2.54 16 3 H 0.11 2.14 6.84 -2.39 -0.02 2.13 16 4 N -0.71 -12.35 4.95 -446.09 -2.21 -14.56 16 5 C 0.52 9.08 7.21 87.65 0.63 9.71 16 6 O -0.56 -12.73 11.01 -3.02 -0.03 -12.76 16 7 C -0.13 -1.54 4.77 29.85 0.14 -1.40 16 8 C -0.05 -0.69 0.77 -52.18 -0.04 -0.73 16 9 C -0.15 -2.21 8.18 71.98 0.59 -1.62 16 10 C -0.14 -1.32 8.47 71.98 0.61 -0.71 16 11 C -0.15 -2.53 8.17 71.98 0.59 -1.94 16 12 C 0.51 12.28 7.14 87.66 0.63 12.91 16 13 O -0.57 -17.43 15.21 -3.05 -0.05 -17.48 16 14 N -0.59 -13.99 2.89 -815.46 -2.35 -16.34 16 15 C 0.06 1.02 7.43 127.77 0.95 1.97 16 16 C 0.14 4.28 3.37 46.27 0.16 4.43 16 17 H 0.10 3.22 7.00 -2.39 -0.02 3.21 16 18 C -0.12 -3.46 6.64 32.07 0.21 -3.24 16 19 C 0.10 4.15 4.70 86.85 0.41 4.56 16 20 N -0.62 -29.38 3.21 -691.99 -2.22 -31.59 16 21 C -0.24 -13.47 10.57 84.03 0.89 -12.58 16 22 H 0.06 3.72 8.06 -2.91 -0.02 3.70 16 23 C -0.03 -2.01 5.43 84.86 0.46 -1.55 16 24 N -0.95 -59.73 13.97 21.65 0.30 -59.43 16 25 Si 0.94 46.66 24.27 68.60 1.66 48.32 16 26 H -0.26 -11.93 6.49 99.48 0.65 -11.28 16 27 H -0.31 -15.40 7.11 99.48 0.71 -14.69 16 28 H -0.28 -13.41 6.66 99.48 0.66 -12.75 16 29 C 0.13 4.84 6.78 86.73 0.59 5.42 16 30 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.10 1.05 4.53 -2.39 -0.01 1.03 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.41 6.67 7.79 -92.71 -0.72 5.95 16 34 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.06 1.23 5.51 -2.39 -0.01 1.22 16 39 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.06 1.32 5.51 -2.39 -0.01 1.31 16 43 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 44 H 0.05 0.76 8.14 -2.39 -0.02 0.75 16 45 H 0.09 1.12 6.89 -2.38 -0.02 1.10 16 46 H 0.10 1.25 6.01 -2.39 -0.01 1.24 16 47 H 0.07 1.52 6.44 -2.39 -0.02 1.50 16 48 H 0.09 2.40 7.11 -2.39 -0.02 2.38 16 49 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 50 H 0.05 2.18 6.64 -2.39 -0.02 2.16 16 51 H 0.02 0.92 5.57 -2.39 -0.01 0.91 16 52 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 53 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 54 H 0.05 1.74 6.29 -2.39 -0.02 1.73 16 Total: -1.00 -73.27 401.02 2.74 -70.54 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: 0.07 Total: 17.09 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: 7.56 Total: 16.22 kcal Atomic # 7 Polarization: -115.45 SS G_CDS: -6.48 Total: -121.93 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -0.08 Total: -30.24 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 1.66 Total: 48.32 kcal Total: -73.27 2.74 -70.54 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665675875.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.390 kcal (2) G-P(sol) polarization free energy of solvation -73.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds