Wall clock time and date at job start Sat Apr 11 2020 05:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.47740 * 2 1 4 4 C 1.52998 * 109.47191 * 120.00111 * 2 1 3 5 5 N 1.46901 * 109.47267 * 294.99968 * 4 2 1 6 6 C 1.47015 * 110.99774 * 293.63712 * 5 4 2 7 7 C 1.53095 * 109.26121 * 177.60788 * 6 5 4 8 8 O 1.43016 * 109.25933 * 56.84113 * 7 6 5 9 9 C 1.43012 * 113.73933 * 301.33637 * 8 7 6 10 10 C 1.47013 * 111.00611 * 169.99993 * 5 4 2 11 11 C 1.50700 * 109.46971 * 239.99742 * 2 1 3 12 12 O 1.21282 * 120.00265 * 240.00522 * 11 2 1 13 13 N 1.34779 * 120.00165 * 60.00321 * 11 2 1 14 14 C 1.46499 * 120.00266 * 180.02562 * 13 11 2 15 15 H 1.09000 * 109.46981 * 35.00099 * 14 13 11 16 16 C 1.52999 * 109.47136 * 154.99966 * 14 13 11 17 17 C 1.52992 * 109.46921 * 179.97438 * 16 14 13 18 18 C 1.52999 * 109.47689 * 299.99639 * 17 16 14 19 19 H 1.08999 * 109.47014 * 300.00743 * 18 17 16 20 20 N 1.46499 * 109.47493 * 180.02562 * 18 17 16 21 21 C 1.36939 * 119.99933 * 155.27860 * 20 18 17 22 22 H 1.08001 * 119.99700 * 359.72658 * 21 20 18 23 23 C 1.38810 * 120.00095 * 179.71972 * 21 20 18 24 24 N 1.31612 * 120.00054 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 119.99751 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47517 * 89.99708 * 25 23 21 27 27 H 1.48502 * 109.46736 * 209.99481 * 25 23 21 28 28 H 1.48496 * 109.47375 * 329.99177 * 25 23 21 29 29 C 1.53008 * 109.46675 * 60.00323 * 18 17 16 30 30 C 1.53002 * 109.46916 * 274.99919 * 14 13 11 31 31 H 1.09005 * 109.47198 * 300.00244 * 1 2 3 32 32 H 1.09006 * 109.46919 * 59.99773 * 1 2 3 33 33 H 1.08994 * 109.47740 * 180.02562 * 1 2 3 34 34 H 1.09009 * 109.47132 * 54.99392 * 4 2 1 35 35 H 1.09000 * 109.47531 * 174.99330 * 4 2 1 36 36 H 1.09005 * 109.50602 * 297.54156 * 6 5 4 37 37 H 1.09004 * 109.50989 * 57.66505 * 6 5 4 38 38 H 1.09000 * 109.50536 * 296.91088 * 7 6 5 39 39 H 1.08994 * 109.54310 * 176.80421 * 7 6 5 40 40 H 1.09001 * 109.50545 * 298.73153 * 9 8 7 41 41 H 1.08999 * 109.53954 * 178.62902 * 9 8 7 42 42 H 1.09002 * 109.50012 * 302.32718 * 10 5 4 43 43 H 1.09000 * 109.50824 * 62.40637 * 10 5 4 44 44 H 0.96999 * 119.99681 * 0.02562 * 13 11 2 45 45 H 1.08999 * 109.46965 * 59.99649 * 16 14 13 46 46 H 1.09006 * 109.47222 * 299.99982 * 16 14 13 47 47 H 1.09009 * 109.47102 * 180.02562 * 17 16 14 48 48 H 1.08999 * 109.47499 * 60.00085 * 17 16 14 49 49 H 0.97001 * 119.99790 * 334.99833 * 20 18 17 50 50 H 0.96998 * 120.00381 * 180.02562 * 24 23 21 51 51 H 1.09000 * 109.47169 * 59.99905 * 29 18 17 52 52 H 1.08995 * 109.47066 * 180.02562 * 29 18 17 53 53 H 1.08999 * 109.47056 * 300.00271 * 30 14 13 54 54 H 1.09000 * 109.46999 * 59.99752 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6514 0.0374 2.4456 6 6 2.3404 1.3352 2.4933 7 6 1.8628 2.1157 3.7207 8 8 2.0961 1.3352 4.8962 9 6 1.4392 0.0650 4.8836 10 6 1.9126 -0.7363 3.6681 11 6 2.0322 -0.7105 -1.2304 12 8 2.7294 -1.6966 -1.1192 13 7 1.7067 -0.2500 -2.4546 14 6 2.1945 -0.9410 -3.6508 15 1 2.2307 -2.0138 -3.4613 16 6 1.2504 -0.6615 -4.8218 17 6 1.7602 -1.3826 -6.0711 18 6 3.1628 -0.8774 -6.4151 19 1 3.1263 0.1955 -6.6043 20 7 3.6507 -1.5674 -7.6118 21 6 4.6017 -0.9786 -8.4018 22 1 4.9888 -0.0036 -8.1451 23 6 5.0683 -1.6350 -9.5324 24 7 5.9819 -1.0689 -10.2920 25 14 4.3983 -3.3212 -9.9766 26 1 3.2139 -3.1666 -10.8589 27 1 5.4458 -4.0988 -10.6860 28 1 4.0027 -4.0387 -8.7381 29 6 4.1070 -1.1569 -5.2440 30 6 3.5973 -0.4362 -3.9948 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.6052 -1.7199 1.2952 35 1 3.1263 -0.7996 1.2056 36 1 3.4163 1.1738 2.5606 37 1 2.1125 1.9017 1.5903 38 1 0.7969 2.3237 3.6277 39 1 2.4119 3.0545 3.7922 40 1 0.3610 0.2133 4.8244 41 1 1.6820 -0.4800 5.7959 42 1 1.3724 -1.6820 3.6226 43 1 2.9815 -0.9316 3.7538 44 1 1.1494 0.5389 -2.5436 45 1 1.2142 0.4112 -5.0113 46 1 0.2510 -1.0211 -4.5767 47 1 1.0879 -1.1832 -6.9056 48 1 1.7968 -2.4555 -5.8820 49 1 3.3031 -2.4432 -7.8422 50 1 6.3077 -1.5273 -11.0823 51 1 4.1435 -2.2297 -5.0548 52 1 5.1061 -0.7965 -5.4888 53 1 3.5610 0.6366 -4.1843 54 1 4.2698 -0.6353 -3.1605 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666323680.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:13 Heat of formation + Delta-G solvation = -105.831065 kcal Electronic energy + Delta-G solvation = -30127.855976 eV Core-core repulsion = 26098.023200 eV Total energy + Delta-G solvation = -4029.832776 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.37638 -40.46130 -39.42070 -37.26263 -36.43989 -34.80911 -33.98290 -32.71510 -32.11260 -31.71338 -29.43369 -28.68913 -26.21430 -25.33316 -25.02190 -23.90417 -23.43496 -22.15774 -21.43775 -21.21265 -20.57491 -19.53004 -18.37210 -17.49028 -17.07946 -17.06590 -16.80482 -16.58443 -16.24698 -16.04780 -15.87807 -15.69376 -15.23242 -15.05366 -15.00870 -14.74860 -14.43066 -14.32208 -14.28374 -13.65107 -13.63209 -13.37537 -13.14542 -13.11440 -13.02490 -12.91084 -12.59145 -12.43232 -12.32572 -12.31345 -12.17783 -12.06404 -11.99720 -11.80401 -11.77693 -11.48486 -11.45076 -11.21842 -10.91179 -10.72282 -10.64132 -10.01610 -9.47308 -9.30193 -8.02177 -5.34898 1.37196 1.40421 1.47596 1.64885 2.08633 2.48377 2.77709 2.98292 3.28595 3.56475 3.63438 3.73307 3.82309 3.85122 3.92146 4.01580 4.04304 4.20211 4.24626 4.28174 4.31151 4.32485 4.34500 4.37071 4.52143 4.57527 4.60623 4.62242 4.67849 4.74465 4.76307 4.82681 4.86374 4.91367 4.93340 5.01895 5.02899 5.08496 5.12340 5.13861 5.22654 5.25461 5.41854 5.47946 5.53172 5.60051 5.78472 5.84678 5.89926 6.19747 6.22596 6.60345 7.08838 7.29893 7.86209 8.04659 9.19487 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.030544 B = 0.001777 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.500514 B =15748.869526 C =15909.406266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.097 4.097 3 H 0.116 0.884 4 C 0.080 3.920 5 N -0.528 5.528 6 C 0.010 3.990 7 C 0.063 3.937 8 O -0.410 6.410 9 C 0.065 3.935 10 C 0.015 3.985 11 C 0.514 3.486 12 O -0.589 6.589 13 N -0.708 5.708 14 C 0.152 3.848 15 H 0.065 0.935 16 C -0.106 4.106 17 C -0.117 4.117 18 C 0.175 3.825 19 H 0.048 0.952 20 N -0.753 5.753 21 C -0.226 4.226 22 H 0.056 0.944 23 C -0.068 4.068 24 N -0.985 5.985 25 Si 0.955 3.045 26 H -0.275 1.275 27 H -0.299 1.299 28 H -0.255 1.255 29 C -0.125 4.125 30 C -0.113 4.113 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.048 0.952 34 H 0.073 0.927 35 H 0.020 0.980 36 H 0.028 0.972 37 H 0.104 0.896 38 H 0.070 0.930 39 H 0.110 0.890 40 H 0.068 0.932 41 H 0.110 0.890 42 H 0.096 0.904 43 H 0.029 0.971 44 H 0.417 0.583 45 H 0.086 0.914 46 H 0.093 0.907 47 H 0.076 0.924 48 H 0.060 0.940 49 H 0.364 0.636 50 H 0.257 0.743 51 H 0.046 0.954 52 H 0.035 0.965 53 H 0.073 0.927 54 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.387 5.741 31.040 36.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.119 4.119 3 H 0.133 0.867 4 C -0.049 4.049 5 N -0.253 5.253 6 C -0.118 4.118 7 C -0.013 4.013 8 O -0.329 6.329 9 C -0.011 4.011 10 C -0.113 4.113 11 C 0.301 3.699 12 O -0.469 6.469 13 N -0.359 5.359 14 C 0.047 3.953 15 H 0.084 0.916 16 C -0.144 4.144 17 C -0.156 4.156 18 C 0.067 3.933 19 H 0.066 0.934 20 N -0.396 5.396 21 C -0.357 4.357 22 H 0.074 0.926 23 C -0.259 4.259 24 N -0.636 5.636 25 Si 0.783 3.217 26 H -0.201 1.201 27 H -0.226 1.226 28 H -0.180 1.180 29 C -0.166 4.166 30 C -0.152 4.152 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.067 0.933 34 H 0.092 0.908 35 H 0.039 0.961 36 H 0.046 0.954 37 H 0.122 0.878 38 H 0.088 0.912 39 H 0.128 0.872 40 H 0.087 0.913 41 H 0.128 0.872 42 H 0.114 0.886 43 H 0.047 0.953 44 H 0.254 0.746 45 H 0.105 0.895 46 H 0.111 0.889 47 H 0.094 0.906 48 H 0.079 0.921 49 H 0.197 0.803 50 H 0.065 0.935 51 H 0.064 0.936 52 H 0.054 0.946 53 H 0.091 0.909 54 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -18.166 5.367 31.173 36.477 hybrid contribution 1.350 -1.148 -1.143 2.109 sum -16.817 4.219 30.030 34.676 Atomic orbital electron populations 1.21645 0.90206 1.02532 1.04051 1.21246 0.99752 1.00781 0.90071 0.86654 1.21757 0.97445 0.96974 0.88696 1.62243 1.57321 1.04015 1.01711 1.22953 0.96168 0.91589 1.01073 1.22792 1.01757 0.93965 0.82818 1.87967 1.73633 1.30293 1.40970 1.22758 0.97261 0.83502 0.97608 1.22838 0.99613 0.98325 0.90506 1.21152 0.79018 0.83964 0.85778 1.90711 1.39955 1.28718 1.87490 1.45933 1.53167 1.32257 1.04576 1.20837 0.93050 0.96756 0.84651 0.91639 1.21652 0.98677 1.02238 0.91855 1.21699 0.95301 1.00319 0.98254 1.20485 0.92510 0.95751 0.84548 0.93403 1.42852 1.48248 1.20529 1.27963 1.19038 1.13095 1.00773 1.02837 0.92619 1.25507 0.99701 1.02652 0.98002 1.69883 1.34816 1.40693 1.18222 0.85402 0.77509 0.80353 0.78461 1.20094 1.22586 1.17972 1.22011 0.99428 0.99580 0.95588 1.21750 0.96563 1.00581 0.96301 0.89653 0.90611 0.93315 0.90841 0.96129 0.95386 0.87750 0.91187 0.87195 0.91344 0.87198 0.88571 0.95253 0.74572 0.89526 0.88865 0.90572 0.92083 0.80282 0.93464 0.93564 0.94635 0.90872 0.93690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.14 8.98 71.98 0.65 -0.50 16 2 C -0.10 -1.29 2.65 -11.54 -0.03 -1.32 16 3 H 0.12 1.12 6.30 -2.39 -0.02 1.10 16 4 C 0.08 1.32 3.69 86.30 0.32 1.64 16 5 N -0.53 -6.94 4.18 -895.21 -3.74 -10.68 16 6 C 0.01 0.12 5.44 86.31 0.47 0.59 16 7 C 0.06 0.67 7.01 72.01 0.50 1.17 16 8 O -0.41 -6.27 10.83 -148.98 -1.61 -7.88 16 9 C 0.07 0.72 7.01 72.01 0.50 1.23 16 10 C 0.02 0.20 5.64 86.31 0.49 0.68 16 11 C 0.51 10.60 7.12 87.66 0.62 11.23 16 12 O -0.59 -18.21 15.58 -3.04 -0.05 -18.25 16 13 N -0.71 -11.83 4.97 -442.53 -2.20 -14.03 16 14 C 0.15 3.42 2.45 44.99 0.11 3.53 16 15 H 0.07 1.81 7.58 -2.39 -0.02 1.79 16 16 C -0.11 -1.99 5.39 30.59 0.16 -1.82 16 17 C -0.12 -3.12 5.39 30.59 0.16 -2.96 16 18 C 0.17 6.36 2.77 44.99 0.12 6.49 16 19 H 0.05 1.82 8.08 -2.39 -0.02 1.80 16 20 N -0.75 -35.04 4.93 -322.93 -1.59 -36.63 16 21 C -0.23 -12.97 10.41 84.03 0.87 -12.10 16 22 H 0.06 3.50 8.06 -2.91 -0.02 3.48 16 23 C -0.07 -4.02 5.50 84.86 0.47 -3.56 16 24 N -0.99 -63.90 13.97 21.65 0.30 -63.60 16 25 Si 0.96 46.12 27.74 68.60 1.90 48.02 16 26 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 27 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 28 H -0.25 -11.23 6.52 99.48 0.65 -10.58 16 29 C -0.13 -4.46 5.50 30.58 0.17 -4.29 16 30 C -0.11 -3.13 5.49 30.58 0.17 -2.96 16 31 H 0.08 0.69 7.75 -2.38 -0.02 0.67 16 32 H 0.07 0.41 7.57 -2.38 -0.02 0.39 16 33 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.07 1.37 8.04 -2.38 -0.02 1.35 16 35 H 0.02 0.44 7.93 -2.39 -0.02 0.43 16 36 H 0.03 0.43 8.14 -2.38 -0.02 0.41 16 37 H 0.10 0.86 6.29 -2.38 -0.01 0.84 16 38 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.10 1.04 8.09 -2.39 -0.02 1.02 16 43 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.42 3.94 8.02 -92.71 -0.74 3.20 16 45 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 47 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 48 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 49 H 0.36 16.31 5.66 -92.71 -0.52 15.78 16 50 H 0.26 15.88 8.31 -92.71 -0.77 15.10 16 51 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 52 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 53 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 54 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -77.15 413.18 -1.67 -78.82 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: -0.45 Total: 27.17 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: 5.77 Total: -2.94 kcal Atomic # 7 Polarization: -117.70 SS G_CDS: -7.23 Total: -124.93 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: -1.66 Total: -26.13 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 1.90 Total: 48.02 kcal Total: -77.15 -1.67 -78.82 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666323680.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.010 kcal (2) G-P(sol) polarization free energy of solvation -77.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds