Wall clock time and date at job start Sat Apr 11 2020 05:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46897 * 109.47000 * 2 1 4 4 C 1.47013 * 111.00158 * 313.63122 * 3 2 1 5 5 C 1.53101 * 109.25951 * 177.60843 * 4 3 2 6 6 O 1.43016 * 109.25742 * 56.85069 * 5 4 3 7 7 C 1.43012 * 113.73862 * 301.32898 * 6 5 4 8 8 C 1.47019 * 111.00067 * 190.00006 * 3 2 1 9 9 H 1.08993 * 109.50507 * 62.45212 * 8 3 2 10 10 C 1.50697 * 109.50466 * 302.32656 * 8 3 2 11 11 O 1.21283 * 120.00291 * 0.21655 * 10 8 3 12 12 N 1.34778 * 120.00383 * 180.21325 * 10 8 3 13 13 C 1.46493 * 120.00316 * 179.97438 * 12 10 8 14 14 C 1.53013 * 109.47046 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.49540 * 59.99974 * 14 13 12 16 16 C 1.53035 * 109.49674 * 180.02562 * 14 13 12 17 17 C 1.53037 * 109.53922 * 181.28293 * 16 14 13 18 18 C 1.53193 * 109.33860 * 298.68643 * 17 16 14 19 19 N 1.46927 * 108.77368 * 54.61780 * 18 17 16 20 20 C 1.36940 * 120.62796 * 126.37146 * 19 18 17 21 21 H 1.07995 * 120.00005 * 331.83817 * 20 19 18 22 22 C 1.38808 * 120.00123 * 151.84159 * 20 19 18 23 23 N 1.31623 * 120.00029 * 343.06886 * 22 20 19 24 24 Si 1.86802 * 120.00289 * 163.06581 * 22 20 19 25 25 H 1.48500 * 109.46693 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.46853 * 120.00183 * 24 22 20 27 27 H 1.48495 * 109.47197 * 240.00019 * 24 22 20 28 28 C 1.46920 * 118.74232 * 306.38877 * 19 18 17 29 29 H 1.08999 * 109.46886 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47056 * 300.00265 * 1 2 3 31 31 H 1.08994 * 109.46715 * 60.00407 * 1 2 3 32 32 H 1.08998 * 109.47056 * 239.99735 * 2 1 3 33 33 H 1.09003 * 109.46925 * 119.99712 * 2 1 3 34 34 H 1.09000 * 109.50927 * 297.54454 * 4 3 2 35 35 H 1.09004 * 109.50125 * 57.63451 * 4 3 2 36 36 H 1.09001 * 109.50425 * 296.91759 * 5 4 3 37 37 H 1.08996 * 109.50494 * 176.78654 * 5 4 3 38 38 H 1.09000 * 109.50633 * 178.60263 * 7 6 5 39 39 H 1.09005 * 109.50965 * 298.73778 * 7 6 5 40 40 H 0.97002 * 119.99207 * 0.02562 * 12 10 8 41 41 H 1.09003 * 109.47202 * 299.99938 * 13 12 10 42 42 H 1.08992 * 109.47418 * 60.00404 * 13 12 10 43 43 H 1.09007 * 109.47262 * 59.99883 * 15 14 13 44 44 H 1.08996 * 109.46774 * 179.97438 * 15 14 13 45 45 H 1.08995 * 109.47115 * 300.00410 * 15 14 13 46 46 H 1.08998 * 109.46249 * 301.34118 * 16 14 13 47 47 H 1.09001 * 109.46300 * 61.29601 * 16 14 13 48 48 H 1.09000 * 109.49730 * 178.71659 * 17 16 14 49 49 H 1.09005 * 109.49491 * 58.65594 * 17 16 14 50 50 H 1.08993 * 109.58591 * 294.82752 * 18 17 16 51 51 H 1.09006 * 109.58635 * 174.40223 * 18 17 16 52 52 H 0.96993 * 120.00509 * 179.97438 * 23 22 20 53 53 H 1.09001 * 109.58478 * 293.82627 * 28 19 18 54 54 H 1.08995 * 109.59170 * 173.39929 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.3024 2.1974 -0.9934 5 6 1.8010 3.6430 -0.9184 6 8 3.2165 3.6650 -1.1213 7 6 3.9465 2.8845 -0.1709 8 6 3.4697 1.4312 -0.2383 9 1 3.6897 1.0212 -1.2240 10 6 4.1789 0.6196 0.8149 11 8 3.5401 0.0543 1.6771 12 7 5.5230 0.5217 0.7988 13 6 6.2124 -0.2668 1.8230 14 6 7.7218 -0.2134 1.5777 15 6 8.1990 1.2387 1.6453 16 6 8.4425 -1.0375 2.6469 17 6 9.9541 -0.9586 2.4214 18 6 10.2933 -1.5453 1.0475 19 7 9.4940 -0.8532 0.0273 20 6 10.0970 -0.2761 -1.0584 21 1 11.1125 0.0838 -0.9841 22 6 9.4029 -0.1538 -2.2542 23 7 8.3170 -0.8682 -2.4610 24 14 10.0100 1.0249 -3.5702 25 1 11.2423 1.7043 -3.0957 26 1 10.3094 0.2682 -4.8124 27 1 8.9612 2.0386 -3.8487 28 6 8.0356 -0.7916 0.1942 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.4879 1.7997 -1.9912 35 1 0.2333 2.1690 -0.7831 36 1 1.5673 4.0582 0.0620 37 1 1.3132 4.2367 -1.6915 38 1 5.0104 2.9296 -0.4034 39 1 3.7752 3.2776 0.8312 40 1 6.0339 0.9741 0.1094 41 1 5.9900 0.1434 2.8081 42 1 5.8726 -1.3013 1.7750 43 1 7.9765 1.6488 2.6305 44 1 9.2743 1.2762 1.4709 45 1 7.6862 1.8256 0.8833 46 1 8.2010 -0.6426 3.6338 47 1 8.1201 -2.0767 2.5831 48 1 10.4678 -1.5270 3.1967 49 1 10.2740 0.0827 2.4614 50 1 10.0578 -2.6094 1.0364 51 1 11.3538 -1.4015 0.8404 52 1 7.8318 -0.7825 -3.2965 53 1 7.6159 -1.7943 0.1135 54 1 7.6064 -0.1506 -0.5757 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671892027.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:32 Heat of formation + Delta-G solvation = -69.955828 kcal Electronic energy + Delta-G solvation = -32345.565030 eV Core-core repulsion = 28317.287921 eV Total energy + Delta-G solvation = -4028.277109 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.72039 -40.39857 -39.39991 -37.24198 -36.22620 -34.93181 -33.48163 -32.44058 -31.65682 -31.56182 -28.18396 -27.82438 -27.27208 -26.88717 -25.49529 -23.91532 -23.28721 -22.32798 -21.72103 -21.09202 -19.61122 -18.58909 -18.43880 -17.65679 -17.38190 -16.93270 -16.65961 -16.38528 -16.06709 -15.90968 -15.81392 -15.53466 -15.38552 -15.18929 -15.09718 -14.78754 -14.46883 -14.22756 -13.96483 -13.75510 -13.72595 -13.30251 -13.05734 -12.99944 -12.83721 -12.73320 -12.67452 -12.58330 -12.40806 -12.26052 -12.11152 -12.06172 -11.84296 -11.71403 -11.57537 -11.39684 -11.19606 -10.97935 -10.96200 -10.51665 -10.49594 -10.06594 -9.45076 -8.61468 -7.83929 -5.28649 1.45939 1.49848 1.50472 1.58668 2.01562 2.52865 2.61328 2.89406 3.29355 3.58984 3.61496 3.71000 3.88390 3.91650 3.95865 4.05083 4.05816 4.08784 4.18259 4.29534 4.37006 4.38326 4.50847 4.52923 4.55776 4.57398 4.59058 4.74448 4.75806 4.76807 4.81876 4.88531 4.94769 5.00626 5.05956 5.11044 5.14896 5.19110 5.21699 5.31463 5.34535 5.42660 5.49304 5.54138 5.64235 5.73034 5.74661 5.79583 5.94032 6.02106 6.42221 6.47233 7.15244 7.19020 7.90098 8.42417 9.21263 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.011228 B = 0.003778 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2493.203965 B = 7409.032685 C = 8781.587041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.035 3.965 3 N -0.521 5.521 4 C 0.011 3.989 5 C 0.056 3.944 6 O -0.393 6.393 7 C 0.082 3.918 8 C 0.032 3.968 9 H 0.067 0.933 10 C 0.522 3.478 11 O -0.554 6.554 12 N -0.713 5.713 13 C 0.145 3.855 14 C -0.091 4.091 15 C -0.119 4.119 16 C -0.094 4.094 17 C -0.123 4.123 18 C 0.136 3.864 19 N -0.604 5.604 20 C -0.253 4.253 21 H 0.064 0.936 22 C -0.042 4.042 23 N -0.932 5.932 24 Si 0.954 3.046 25 H -0.268 1.268 26 H -0.299 1.299 27 H -0.287 1.287 28 C 0.198 3.802 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.016 0.984 33 H 0.086 0.914 34 H 0.038 0.962 35 H 0.118 0.882 36 H 0.067 0.933 37 H 0.125 0.875 38 H 0.108 0.892 39 H 0.070 0.930 40 H 0.405 0.595 41 H 0.076 0.924 42 H 0.048 0.952 43 H 0.064 0.936 44 H 0.055 0.945 45 H 0.041 0.959 46 H 0.079 0.921 47 H 0.049 0.951 48 H 0.079 0.921 49 H 0.065 0.935 50 H 0.006 0.994 51 H 0.051 0.949 52 H 0.247 0.753 53 H -0.021 1.021 54 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.077 7.330 7.455 15.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.092 4.092 3 N -0.248 5.248 4 C -0.116 4.116 5 C -0.020 4.020 6 O -0.312 6.312 7 C 0.004 3.996 8 C -0.080 4.080 9 H 0.084 0.916 10 C 0.307 3.693 11 O -0.433 6.433 12 N -0.365 5.365 13 C 0.021 3.979 14 C -0.093 4.093 15 C -0.176 4.176 16 C -0.132 4.132 17 C -0.162 4.162 18 C 0.010 3.990 19 N -0.327 5.327 20 C -0.383 4.383 21 H 0.081 0.919 22 C -0.238 4.238 23 N -0.578 5.578 24 Si 0.783 3.217 25 H -0.193 1.193 26 H -0.227 1.227 27 H -0.214 1.214 28 C 0.072 3.928 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.034 0.966 33 H 0.104 0.896 34 H 0.056 0.944 35 H 0.135 0.865 36 H 0.086 0.914 37 H 0.143 0.857 38 H 0.126 0.874 39 H 0.088 0.912 40 H 0.242 0.758 41 H 0.094 0.906 42 H 0.066 0.934 43 H 0.083 0.917 44 H 0.074 0.926 45 H 0.060 0.940 46 H 0.098 0.902 47 H 0.068 0.932 48 H 0.097 0.903 49 H 0.084 0.916 50 H 0.024 0.976 51 H 0.070 0.930 52 H 0.057 0.943 53 H -0.003 1.003 54 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.586 7.218 8.248 16.690 hybrid contribution 0.678 -0.493 -2.180 2.336 sum -11.908 6.726 6.068 14.962 Atomic orbital electron populations 1.21852 0.92731 1.02744 1.02724 1.22449 0.97441 0.88218 1.01085 1.62146 1.00744 1.12653 1.49213 1.23074 1.00976 0.94264 0.93297 1.22975 0.80167 0.95343 1.03534 1.88016 1.19715 1.69389 1.54047 1.22553 0.96786 0.86290 0.93984 1.22274 0.90810 0.98305 0.96616 0.91577 1.20371 0.82264 0.80926 0.85702 1.90573 1.65812 1.48024 1.38913 1.46105 1.06232 1.52082 1.32049 1.21286 0.91039 0.94632 0.90970 1.21351 0.92401 0.97579 0.97988 1.21642 1.01574 0.93685 1.00698 1.21368 0.95311 0.98882 0.97671 1.21917 0.95864 1.01612 0.96784 1.21109 0.94907 0.93467 0.89497 1.44238 1.02605 1.62973 1.22873 1.19469 0.98969 1.30695 0.89152 0.91853 1.25614 0.99005 1.00666 0.98477 1.70190 1.21115 1.41432 1.25096 0.85406 0.78069 0.79014 0.79191 1.19258 1.22670 1.21361 1.20538 0.83632 0.95581 0.93033 0.91341 0.91606 0.91300 0.96604 0.89594 0.94398 0.86450 0.91444 0.85719 0.87430 0.91191 0.75828 0.90577 0.93398 0.91698 0.92592 0.94030 0.90224 0.93184 0.90277 0.91628 0.97608 0.93049 0.94332 1.00294 0.91746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.18 71.98 0.66 -2.04 16 2 C 0.04 0.93 5.33 86.31 0.46 1.39 16 3 N -0.52 -13.40 4.51 -874.37 -3.94 -17.35 16 4 C 0.01 0.22 4.94 86.32 0.43 0.65 16 5 C 0.06 1.03 7.01 72.02 0.50 1.53 16 6 O -0.39 -9.74 10.83 -148.98 -1.61 -11.35 16 7 C 0.08 2.02 6.16 72.02 0.44 2.47 16 8 C 0.03 0.91 2.36 44.18 0.10 1.01 16 9 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 10 C 0.52 16.69 6.89 87.66 0.60 17.30 16 11 O -0.55 -20.37 13.69 -3.04 -0.04 -20.41 16 12 N -0.71 -22.41 4.90 -463.06 -2.27 -24.68 16 13 C 0.14 4.57 4.57 86.38 0.39 4.97 16 14 C -0.09 -3.04 0.53 -52.10 -0.03 -3.07 16 15 C -0.12 -3.68 7.81 71.98 0.56 -3.12 16 16 C -0.09 -2.79 4.71 30.62 0.14 -2.65 16 17 C -0.12 -3.74 5.74 30.67 0.18 -3.57 16 18 C 0.14 5.38 6.52 86.36 0.56 5.94 16 19 N -0.60 -28.51 2.43 -699.12 -1.70 -30.21 16 20 C -0.25 -13.18 9.58 84.03 0.81 -12.37 16 21 H 0.06 3.27 7.88 -2.91 -0.02 3.25 16 22 C -0.04 -2.24 4.92 84.86 0.42 -1.82 16 23 N -0.93 -52.70 11.20 21.65 0.24 -52.46 16 24 Si 0.95 43.23 29.59 68.60 2.03 45.25 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 26 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 27 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 28 C 0.20 8.81 3.72 86.36 0.32 9.13 16 29 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.07 1.07 6.28 -2.39 -0.01 1.05 16 32 H 0.02 0.44 8.08 -2.39 -0.02 0.42 16 33 H 0.09 2.75 5.48 -2.39 -0.01 2.74 16 34 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.12 1.76 6.05 -2.39 -0.01 1.75 16 36 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.11 2.55 7.67 -2.39 -0.02 2.53 16 39 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 40 H 0.41 12.91 5.70 -92.71 -0.53 12.38 16 41 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 44 H 0.06 1.94 5.97 -2.39 -0.01 1.93 16 45 H 0.04 1.29 6.86 -2.39 -0.02 1.28 16 46 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 47 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 48 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 49 H 0.07 1.99 6.34 -2.38 -0.02 1.98 16 50 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 51 H 0.05 2.01 7.93 -2.38 -0.02 1.99 16 52 H 0.25 13.69 8.31 -92.71 -0.77 12.92 16 53 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 54 H 0.06 3.15 4.97 -2.39 -0.01 3.14 16 Total: -1.00 -64.45 398.09 -0.38 -64.83 By element: Atomic # 1 Polarization: 30.28 SS G_CDS: 0.35 Total: 30.63 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: 6.56 Total: 15.74 kcal Atomic # 7 Polarization: -117.02 SS G_CDS: -7.67 Total: -124.69 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -1.65 Total: -31.76 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Total: -64.45 -0.38 -64.83 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671892027.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.125 kcal (2) G-P(sol) polarization free energy of solvation -64.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds