Wall clock time and date at job start Sat Apr 11 2020 05:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.46452 * 2 1 4 4 N 1.46493 * 109.47374 * 120.00137 * 2 1 3 5 5 C 1.34772 * 120.00286 * 275.00448 * 4 2 1 6 6 O 1.21287 * 120.00106 * 359.97438 * 5 4 2 7 7 C 1.50702 * 120.00309 * 179.97438 * 5 4 2 8 8 C 1.53007 * 109.47105 * 179.97438 * 7 5 4 9 9 C 1.52992 * 109.47224 * 59.99995 * 8 7 5 10 10 C 1.53000 * 109.46784 * 180.02562 * 8 7 5 11 11 C 1.53000 * 109.47024 * 299.99808 * 8 7 5 12 12 C 1.50699 * 109.46847 * 240.00581 * 2 1 3 13 13 O 1.21285 * 119.99554 * 239.99352 * 12 2 1 14 14 N 1.34775 * 120.00689 * 59.99971 * 12 2 1 15 15 C 1.46493 * 120.00429 * 179.97438 * 14 12 2 16 16 H 1.09004 * 109.49866 * 325.06201 * 15 14 12 17 17 C 1.53042 * 109.49847 * 204.99977 * 15 14 12 18 18 C 1.53040 * 109.53577 * 178.64985 * 17 15 14 19 19 C 1.53188 * 109.31368 * 61.36819 * 18 17 15 20 20 N 1.46927 * 108.77455 * 305.36227 * 19 18 17 21 21 C 1.36936 * 120.63108 * 233.58941 * 20 19 18 22 22 H 1.08004 * 120.00484 * 152.62553 * 21 20 19 23 23 C 1.38812 * 119.99899 * 332.62254 * 21 20 19 24 24 N 1.31621 * 120.00212 * 342.38754 * 23 21 20 25 25 Si 1.86802 * 119.99913 * 162.38332 * 23 21 20 26 26 H 1.48509 * 109.46924 * 84.98769 * 25 23 21 27 27 H 1.48500 * 109.47488 * 324.98888 * 25 23 21 28 28 H 1.48503 * 109.47320 * 204.98250 * 25 23 21 29 29 C 1.46928 * 118.73857 * 53.86182 * 20 19 18 30 30 H 1.09001 * 109.47041 * 59.99524 * 1 2 3 31 31 H 1.08994 * 109.46748 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46954 * 299.99722 * 1 2 3 33 33 H 0.97006 * 119.99909 * 94.99977 * 4 2 1 34 34 H 1.09001 * 109.46782 * 299.99638 * 7 5 4 35 35 H 1.09002 * 109.46955 * 59.99954 * 7 5 4 36 36 H 1.09001 * 109.47472 * 59.99793 * 9 8 7 37 37 H 1.09002 * 109.47194 * 179.97438 * 9 8 7 38 38 H 1.09003 * 109.47448 * 299.99949 * 9 8 7 39 39 H 1.09002 * 109.47180 * 60.00087 * 10 8 7 40 40 H 1.09004 * 109.47052 * 179.97438 * 10 8 7 41 41 H 1.08994 * 109.47147 * 299.99776 * 10 8 7 42 42 H 1.08996 * 109.47150 * 59.99891 * 11 8 7 43 43 H 1.08997 * 109.47552 * 180.02562 * 11 8 7 44 44 H 1.09008 * 109.47010 * 300.00263 * 11 8 7 45 45 H 0.97006 * 119.99186 * 359.97438 * 14 12 2 46 46 H 1.08996 * 109.46207 * 58.62890 * 17 15 14 47 47 H 1.09000 * 109.45894 * 298.66681 * 17 15 14 48 48 H 1.08994 * 109.49812 * 301.41119 * 18 17 15 49 49 H 1.09002 * 109.52238 * 181.32668 * 18 17 15 50 50 H 1.09001 * 109.59108 * 185.57403 * 19 18 17 51 51 H 1.09003 * 109.59182 * 65.14719 * 19 18 17 52 52 H 0.96994 * 120.00226 * 180.02562 * 24 23 21 53 53 H 1.08995 * 109.58564 * 65.92961 * 29 20 19 54 54 H 1.08999 * 109.58339 * 186.35631 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0184 2.3571 6 8 1.8590 1.1585 2.4116 7 6 2.6490 -0.7289 3.5877 8 6 2.7011 0.2544 4.7588 9 6 1.2989 0.8058 5.0245 10 6 3.2112 -0.4670 6.0079 11 6 3.6459 1.4075 4.4148 12 6 2.0323 -0.7103 -1.2305 13 8 2.7297 -1.6964 -1.1193 14 7 1.7068 -0.2498 -2.4546 15 6 2.1955 -0.9400 -3.6508 16 1 3.1945 -1.3330 -3.4615 17 6 2.2470 0.0431 -4.8226 18 6 2.7893 -0.6686 -6.0642 19 6 1.8501 -1.8192 -6.4394 20 7 1.6805 -2.6918 -5.2695 21 6 1.9192 -4.0370 -5.3621 22 1 2.2272 -4.5923 -4.4884 23 6 1.7653 -4.6871 -6.5789 24 7 1.0737 -4.1206 -7.5449 25 14 2.5397 -6.3661 -6.8454 26 1 1.6285 -7.4190 -6.3290 27 1 3.8350 -6.4342 -6.1224 28 1 2.7709 -6.5798 -8.2967 29 6 1.2442 -2.0946 -4.0000 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3632 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.2491 -1.6318 1.1525 34 1 1.9760 -1.5507 3.8324 35 1 3.6481 -1.1214 3.3985 36 1 0.6258 -0.0157 5.2695 37 1 1.3360 1.5060 5.8591 38 1 0.9359 1.3198 4.1344 39 1 4.2102 -0.8595 5.8183 40 1 3.2488 0.2336 6.8422 41 1 2.5384 -1.2887 6.2531 42 1 3.2830 1.9214 3.5247 43 1 3.6835 2.1078 5.2492 44 1 4.6449 1.0146 4.2255 45 1 1.1488 0.5387 -2.5435 46 1 2.9003 0.8776 -4.5680 47 1 1.2438 0.4168 -5.0274 48 1 3.7826 -1.0641 -5.8521 49 1 2.8480 0.0377 -6.8924 50 1 2.2818 -2.3900 -7.2615 51 1 0.8820 -1.4179 -6.7392 52 1 0.9658 -4.5750 -8.3950 53 1 0.2278 -1.7153 -4.1050 54 1 1.2760 -2.8472 -3.2122 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690049559.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:04 Heat of formation + Delta-G solvation = -92.614455 kcal Electronic energy + Delta-G solvation = -30583.663272 eV Core-core repulsion = 26554.403612 eV Total energy + Delta-G solvation = -4029.259661 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.63297 -40.72088 -39.06537 -37.60339 -36.01750 -35.82332 -34.22527 -32.34452 -32.27783 -30.09335 -28.85482 -28.06048 -27.99418 -27.25802 -25.63421 -23.88825 -23.54054 -21.74937 -21.31116 -20.99492 -19.91763 -18.73697 -18.63420 -17.74087 -17.20922 -16.89852 -16.60701 -16.23524 -16.07183 -15.78646 -15.41084 -15.31841 -15.19294 -15.15355 -14.85785 -14.63249 -14.19524 -14.12411 -13.87575 -13.61008 -13.41714 -13.35686 -13.03341 -12.99541 -12.89955 -12.74071 -12.66956 -12.63468 -12.56375 -12.17871 -12.15175 -11.99631 -11.97483 -11.75232 -11.60925 -11.58389 -11.50756 -11.31344 -10.91041 -10.61979 -10.46812 -10.15552 -10.10440 -8.70121 -7.91041 -5.35840 1.43628 1.45345 1.50342 1.55347 1.62918 1.84940 2.39104 2.51489 3.23223 3.49890 3.72419 3.76517 3.85972 3.92037 3.96069 4.04103 4.07959 4.14367 4.24627 4.31804 4.48193 4.56317 4.61207 4.65038 4.66478 4.71158 4.79029 4.81518 4.87385 4.89926 4.91114 5.02115 5.02218 5.11839 5.12245 5.13255 5.18484 5.20601 5.22448 5.26785 5.37631 5.41501 5.45280 5.55169 5.56951 5.62643 5.69955 5.76239 6.35995 6.50019 6.52038 7.11919 7.18246 7.25934 7.82424 8.31804 9.14474 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.019172 B = 0.002165 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.138617 B =12928.160475 C =13729.884361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.134 3.866 3 H 0.119 0.881 4 N -0.715 5.715 5 C 0.517 3.483 6 O -0.556 6.556 7 C -0.131 4.131 8 C -0.052 4.052 9 C -0.150 4.150 10 C -0.139 4.139 11 C -0.151 4.151 12 C 0.508 3.492 13 O -0.575 6.575 14 N -0.701 5.701 15 C 0.142 3.858 16 H 0.059 0.941 17 C -0.106 4.106 18 C -0.130 4.130 19 C 0.170 3.830 20 N -0.608 5.608 21 C -0.266 4.266 22 H 0.054 0.946 23 C -0.046 4.046 24 N -0.929 5.929 25 Si 0.964 3.036 26 H -0.283 1.283 27 H -0.276 1.276 28 H -0.287 1.287 29 C 0.145 3.855 30 H 0.090 0.910 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.411 0.589 34 H 0.111 0.889 35 H 0.105 0.895 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.053 0.947 44 H 0.049 0.951 45 H 0.417 0.583 46 H 0.086 0.914 47 H 0.077 0.923 48 H 0.046 0.954 49 H 0.083 0.917 50 H 0.054 0.946 51 H 0.005 0.995 52 H 0.252 0.748 53 H 0.023 0.977 54 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.178 13.135 21.863 25.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.025 3.975 3 H 0.137 0.863 4 N -0.369 5.369 5 C 0.306 3.694 6 O -0.435 6.435 7 C -0.171 4.171 8 C -0.052 4.052 9 C -0.207 4.207 10 C -0.196 4.196 11 C -0.209 4.209 12 C 0.294 3.706 13 O -0.454 6.454 14 N -0.353 5.353 15 C 0.036 3.964 16 H 0.077 0.923 17 C -0.144 4.144 18 C -0.169 4.169 19 C 0.045 3.955 20 N -0.331 5.331 21 C -0.396 4.396 22 H 0.072 0.928 23 C -0.241 4.241 24 N -0.575 5.575 25 Si 0.792 3.208 26 H -0.209 1.209 27 H -0.202 1.202 28 H -0.213 1.213 29 C 0.018 3.982 30 H 0.109 0.891 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.248 0.752 34 H 0.129 0.871 35 H 0.124 0.876 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.068 0.932 45 H 0.254 0.746 46 H 0.104 0.896 47 H 0.096 0.904 48 H 0.065 0.935 49 H 0.102 0.898 50 H 0.073 0.927 51 H 0.023 0.977 52 H 0.061 0.939 53 H 0.041 0.959 54 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 1.435 13.205 21.810 25.537 hybrid contribution 0.084 -1.343 -0.688 1.511 sum 1.519 11.862 21.123 24.273 Atomic orbital electron populations 1.22096 0.91379 1.03163 1.04438 1.20719 0.96557 0.97636 0.82539 0.86322 1.45952 1.67318 1.15045 1.08575 1.21128 0.76483 0.87113 0.84719 1.90575 1.50991 1.16940 1.84974 1.21860 1.04150 0.99647 0.91414 1.20292 0.96329 0.94652 0.93949 1.22050 0.95593 1.00894 1.02160 1.21864 1.01319 1.00315 0.96121 1.22065 0.98326 0.98183 1.02280 1.21050 0.79612 0.84264 0.85680 1.90719 1.39671 1.27965 1.87046 1.45834 1.53087 1.31886 1.04521 1.21361 0.97491 0.93266 0.84286 0.92321 1.21621 1.02639 0.97018 0.93088 1.22013 0.99031 0.97929 0.97966 1.20729 0.95144 0.89961 0.89647 1.44246 1.78274 1.03800 1.06813 1.19368 1.38946 0.85483 0.95817 0.92778 1.25715 0.99372 1.01312 0.97734 1.70162 1.41543 1.40334 1.05420 0.85355 0.78627 0.80096 0.76743 1.20920 1.20162 1.21250 1.21303 0.94837 0.94083 0.87928 0.89104 0.92332 0.90722 0.75196 0.87060 0.87650 0.92793 0.92912 0.91827 0.92097 0.92185 0.91811 0.91967 0.92803 0.93155 0.74590 0.89558 0.90441 0.93469 0.89828 0.92738 0.97659 0.93890 0.95903 0.94920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.38 71.98 0.68 -1.87 16 2 C 0.13 2.70 2.98 44.25 0.13 2.83 16 3 H 0.12 2.28 7.58 -2.39 -0.02 2.26 16 4 N -0.72 -14.28 4.95 -446.10 -2.21 -16.49 16 5 C 0.52 10.04 7.21 87.66 0.63 10.67 16 6 O -0.56 -13.24 11.01 -3.05 -0.03 -13.28 16 7 C -0.13 -1.83 4.77 29.85 0.14 -1.69 16 8 C -0.05 -0.75 0.77 -52.18 -0.04 -0.79 16 9 C -0.15 -2.40 8.18 71.98 0.59 -1.81 16 10 C -0.14 -1.51 8.47 71.98 0.61 -0.90 16 11 C -0.15 -2.56 8.17 71.98 0.59 -1.98 16 12 C 0.51 13.61 7.19 87.66 0.63 14.24 16 13 O -0.57 -20.55 15.50 -3.05 -0.05 -20.60 16 14 N -0.70 -17.27 4.97 -441.48 -2.20 -19.46 16 15 C 0.14 4.73 2.62 45.22 0.12 4.85 16 16 H 0.06 2.33 7.58 -2.38 -0.02 2.31 16 17 C -0.11 -2.98 5.35 30.62 0.16 -2.81 16 18 C -0.13 -4.54 6.08 30.67 0.19 -4.35 16 19 C 0.17 8.00 5.31 86.36 0.46 8.46 16 20 N -0.61 -30.99 2.99 -698.25 -2.09 -33.08 16 21 C -0.27 -15.18 9.59 84.03 0.81 -14.38 16 22 H 0.05 3.14 7.89 -2.91 -0.02 3.11 16 23 C -0.05 -2.58 4.91 84.86 0.42 -2.17 16 24 N -0.93 -54.73 11.18 21.65 0.24 -54.49 16 25 Si 0.96 45.72 29.59 68.60 2.03 47.75 16 26 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 27 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 28 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 29 C 0.15 6.18 6.12 86.51 0.53 6.71 16 30 H 0.09 1.17 7.56 -2.39 -0.02 1.15 16 31 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.41 8.27 7.79 -92.70 -0.72 7.54 16 34 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.06 1.31 5.51 -2.39 -0.01 1.30 16 39 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 41 H 0.06 0.59 8.14 -2.39 -0.02 0.58 16 42 H 0.06 1.35 5.51 -2.39 -0.01 1.34 16 43 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 45 H 0.42 7.06 8.02 -92.70 -0.74 6.32 16 46 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 47 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 48 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 49 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 50 H 0.05 2.93 6.02 -2.39 -0.01 2.92 16 51 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 52 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 53 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 54 H 0.03 1.51 7.93 -2.39 -0.02 1.49 16 Total: -1.00 -71.55 416.74 1.75 -69.80 By element: Atomic # 1 Polarization: 25.41 SS G_CDS: -0.58 Total: 24.83 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: 6.64 Total: 15.02 kcal Atomic # 7 Polarization: -117.27 SS G_CDS: -6.25 Total: -123.52 kcal Atomic # 8 Polarization: -33.80 SS G_CDS: -0.08 Total: -33.88 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -71.55 1.75 -69.80 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690049559.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.818 kcal (2) G-P(sol) polarization free energy of solvation -71.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds