Wall clock time and date at job start Sat Apr 11 2020 05:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46898 * 109.47163 * 2 1 4 4 C 1.47019 * 110.99875 * 66.05138 * 3 2 1 5 5 C 1.53096 * 109.25923 * 177.60674 * 4 3 2 6 6 O 1.43010 * 109.25880 * 56.84500 * 5 4 3 7 7 C 1.43016 * 113.74137 * 301.32948 * 6 5 4 8 8 H 1.08996 * 109.50533 * 298.69417 * 7 6 5 9 9 C 1.50697 * 109.50941 * 178.60454 * 7 6 5 10 10 O 1.21281 * 119.99781 * 351.84108 * 9 7 6 11 11 N 1.34771 * 120.00312 * 171.83962 * 9 7 6 12 12 C 1.46924 * 120.63478 * 175.71008 * 11 9 7 13 13 C 1.53193 * 108.77612 * 233.63200 * 12 11 9 14 14 C 1.53041 * 109.31143 * 305.36151 * 13 12 11 15 15 C 1.52996 * 109.46019 * 181.38615 * 14 13 12 16 16 N 1.46502 * 109.47272 * 175.00162 * 15 14 13 17 17 C 1.46500 * 119.99588 * 270.00180 * 16 15 14 18 18 C 1.36936 * 120.00096 * 89.99697 * 16 15 14 19 19 H 1.07997 * 120.00165 * 341.08052 * 18 16 15 20 20 C 1.38812 * 119.99517 * 161.07093 * 18 16 15 21 21 N 1.31620 * 120.00627 * 347.05352 * 20 18 16 22 22 Si 1.86809 * 119.99424 * 167.04804 * 20 18 16 23 23 H 1.48498 * 109.46931 * 180.02562 * 22 20 18 24 24 H 1.48495 * 109.47097 * 300.00366 * 22 20 18 25 25 H 1.48505 * 109.46906 * 60.00458 * 22 20 18 26 26 C 1.53040 * 109.53590 * 61.36671 * 14 13 12 27 27 C 1.46930 * 120.62898 * 355.72866 * 11 9 7 28 28 C 1.47005 * 111.00330 * 302.41306 * 3 2 1 29 29 H 1.09001 * 109.47267 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46934 * 299.99812 * 1 2 3 31 31 H 1.09003 * 109.47508 * 59.99558 * 1 2 3 32 32 H 1.09006 * 109.46876 * 240.00677 * 2 1 3 33 33 H 1.09000 * 109.47212 * 120.00880 * 2 1 3 34 34 H 1.09004 * 109.50508 * 57.66550 * 4 3 2 35 35 H 1.09001 * 109.53679 * 297.56521 * 4 3 2 36 36 H 1.09002 * 109.50582 * 296.90938 * 5 4 3 37 37 H 1.08999 * 109.50190 * 176.78379 * 5 4 3 38 38 H 1.08996 * 109.58929 * 113.84149 * 12 11 9 39 39 H 1.09004 * 109.69859 * 353.48590 * 12 11 9 40 40 H 1.09003 * 109.49485 * 185.41319 * 13 12 11 41 41 H 1.08998 * 109.52511 * 65.33177 * 13 12 11 42 42 H 1.09003 * 109.46120 * 301.36171 * 14 13 12 43 43 H 1.09006 * 109.47008 * 54.99866 * 15 14 13 44 44 H 1.09002 * 109.47189 * 295.00036 * 15 14 13 45 45 H 1.09004 * 109.46696 * 264.83028 * 17 16 15 46 46 H 1.08998 * 109.47697 * 24.82915 * 17 16 15 47 47 H 1.09003 * 109.46898 * 144.83673 * 17 16 15 48 48 H 0.96995 * 119.99862 * 179.97438 * 21 20 18 49 49 H 1.08998 * 109.50038 * 58.58691 * 26 14 13 50 50 H 1.09001 * 109.49515 * 178.68696 * 26 14 13 51 51 H 1.08999 * 109.58544 * 246.15710 * 27 11 9 52 52 H 1.09003 * 109.58613 * 6.58462 * 27 11 9 53 53 H 1.09001 * 109.50937 * 62.45769 * 28 3 2 54 54 H 1.08996 * 109.50931 * 302.32632 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6700 2.0674 1.2544 5 6 2.2493 3.4844 1.2368 6 8 1.7595 4.1800 0.0873 7 6 2.0827 3.5434 -1.1519 8 1 3.1658 3.4938 -1.2639 9 6 1.4946 4.3339 -2.2922 10 8 0.7398 5.2557 -2.0653 11 7 1.8074 4.0166 -3.5641 12 6 1.1706 4.7159 -4.6885 13 6 0.5554 3.6766 -5.6308 14 6 1.6309 2.6696 -6.0450 15 6 1.0284 1.6499 -7.0136 16 7 2.0832 0.7586 -7.5028 17 6 2.8294 1.1034 -8.7154 18 6 2.3716 -0.3966 -6.8265 19 1 2.0613 -0.5125 -5.7986 20 6 3.0627 -1.4189 -7.4623 21 7 3.2184 -1.3947 -8.7690 22 14 3.7721 -2.8289 -6.4631 23 1 4.4586 -3.7827 -7.3710 24 1 4.7464 -2.2960 -5.4773 25 1 2.6755 -3.5287 -5.7467 26 6 2.1581 1.9447 -4.8045 27 6 2.7915 2.9645 -3.8528 28 6 1.5017 2.1269 -1.1586 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5140 0.8899 34 1 2.0851 1.5148 2.0973 35 1 0.5855 2.1186 1.3514 36 1 3.3372 3.4323 1.1946 37 1 1.9444 4.0134 2.1397 38 1 1.9177 5.2997 -5.2261 39 1 0.3894 5.3778 -4.3145 40 1 0.1638 4.1758 -6.5172 41 1 -0.2538 3.1551 -5.1196 42 1 2.4510 3.1949 -6.5344 43 1 0.5749 2.1727 -7.8558 44 1 0.2679 1.0639 -6.4976 45 1 2.3762 0.6079 -9.5741 46 1 2.8035 2.1829 -8.8635 47 1 3.8637 0.7756 -8.6110 48 1 3.7017 -2.1088 -9.2131 49 1 1.3342 1.4396 -4.3006 50 1 2.9073 1.2113 -5.1028 51 1 3.6708 3.4055 -4.3223 52 1 3.0795 2.4691 -2.9256 53 1 0.4145 2.1793 -1.1009 54 1 1.7940 1.6180 -2.0770 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692030246.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:22 Heat of formation + Delta-G solvation = -61.968245 kcal Electronic energy + Delta-G solvation = -32226.857730 eV Core-core repulsion = 28198.926989 eV Total energy + Delta-G solvation = -4027.930741 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.84301 -40.28902 -38.95030 -37.39373 -37.01936 -34.65871 -33.21500 -32.29959 -31.79161 -31.49792 -28.72207 -27.91412 -27.66111 -25.96859 -24.78572 -24.29212 -23.76500 -22.55622 -21.33310 -21.09203 -20.01508 -18.62339 -18.54345 -17.78207 -17.28213 -16.90660 -16.55169 -16.45264 -16.14383 -15.89597 -15.65532 -15.46203 -15.30224 -15.03533 -14.89131 -14.85618 -14.70785 -14.19411 -14.02954 -13.79547 -13.68749 -13.41638 -13.13945 -12.95291 -12.85593 -12.78156 -12.67913 -12.57461 -12.44267 -12.16800 -12.14612 -12.00268 -11.97476 -11.89027 -11.80129 -11.61364 -11.26000 -11.13941 -10.80735 -10.72244 -10.52308 -9.71773 -9.46361 -8.69927 -7.73202 -5.17021 1.38538 1.51161 1.52875 1.58604 1.66811 2.57609 2.68166 2.84567 3.39875 3.45131 3.61604 3.71282 3.81636 3.87648 3.92518 4.00050 4.05131 4.16485 4.18134 4.21339 4.25789 4.34793 4.37308 4.43201 4.48724 4.52775 4.59588 4.62236 4.75535 4.81660 4.84112 4.86535 4.88847 4.92565 4.93749 4.98820 5.06810 5.10554 5.15059 5.21589 5.23667 5.36493 5.46140 5.65440 5.66552 5.72610 5.79568 5.81668 5.91522 5.98600 6.30470 6.40180 7.02079 7.24461 7.98317 8.41537 9.30710 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010960 B = 0.003791 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2554.048949 B = 7384.837525 C = 9286.800445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.049 3.951 3 N -0.535 5.535 4 C 0.012 3.988 5 C 0.057 3.943 6 O -0.386 6.386 7 C 0.083 3.917 8 H 0.105 0.895 9 C 0.520 3.480 10 O -0.569 6.569 11 N -0.599 5.599 12 C 0.116 3.884 13 C -0.116 4.116 14 C -0.094 4.094 15 C 0.155 3.845 16 N -0.617 5.617 17 C 0.180 3.820 18 C -0.240 4.240 19 H 0.081 0.919 20 C -0.060 4.060 21 N -0.946 5.946 22 Si 0.958 3.042 23 H -0.303 1.303 24 H -0.274 1.274 25 H -0.278 1.278 26 C -0.117 4.117 27 C 0.104 3.896 28 C 0.030 3.970 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.042 0.958 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.112 0.888 35 H 0.040 0.960 36 H 0.072 0.928 37 H 0.121 0.879 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.057 0.943 42 H 0.063 0.937 43 H 0.043 0.957 44 H 0.037 0.963 45 H -0.004 1.004 46 H 0.026 0.974 47 H 0.020 0.980 48 H 0.243 0.757 49 H 0.052 0.948 50 H 0.078 0.922 51 H 0.082 0.918 52 H 0.099 0.901 53 H 0.037 0.963 54 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.409 8.085 18.657 20.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.079 4.079 3 N -0.259 5.259 4 C -0.116 4.116 5 C -0.019 4.019 6 O -0.305 6.305 7 C 0.022 3.978 8 H 0.123 0.877 9 C 0.307 3.693 10 O -0.448 6.448 11 N -0.332 5.332 12 C -0.006 4.006 13 C -0.155 4.155 14 C -0.115 4.115 15 C 0.029 3.971 16 N -0.340 5.340 17 C 0.035 3.965 18 C -0.370 4.370 19 H 0.098 0.902 20 C -0.254 4.254 21 N -0.594 5.594 22 Si 0.787 3.213 23 H -0.230 1.230 24 H -0.200 1.200 25 H -0.204 1.204 26 C -0.155 4.155 27 C -0.018 4.018 28 C -0.099 4.099 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.096 0.904 33 H 0.115 0.885 34 H 0.131 0.869 35 H 0.058 0.942 36 H 0.090 0.910 37 H 0.139 0.861 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.107 0.893 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.062 0.938 44 H 0.055 0.945 45 H 0.014 0.986 46 H 0.045 0.955 47 H 0.038 0.962 48 H 0.053 0.947 49 H 0.071 0.929 50 H 0.096 0.904 51 H 0.101 0.899 52 H 0.117 0.883 53 H 0.056 0.944 54 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.316 8.613 18.647 20.582 hybrid contribution -0.460 -1.290 -0.127 1.375 sum -1.777 7.324 18.520 19.995 Atomic orbital electron populations 1.22398 0.98023 1.03038 1.01449 1.22262 0.93084 0.88372 1.04146 1.62504 1.58629 1.02889 1.01873 1.22928 0.99466 0.95913 0.93245 1.23011 0.99354 0.91532 0.88021 1.88070 1.78927 1.49808 1.13659 1.21896 1.00471 0.91019 0.84413 0.87732 1.20441 0.80928 0.83778 0.84122 1.90664 1.38003 1.31579 1.84563 1.48147 1.42396 1.37903 1.04754 1.21649 0.98008 0.94622 0.86349 1.21846 0.97802 0.96554 0.99296 1.21598 0.97849 0.95962 0.96074 1.20906 0.89658 0.91200 0.95309 1.44151 1.39159 1.22015 1.28693 1.20499 0.94856 0.93315 0.87822 1.19522 1.30732 0.92338 0.94452 0.90173 1.25661 1.03497 1.00155 0.96078 1.70262 1.46662 1.34261 1.08263 0.85464 0.78559 0.79454 0.77785 1.22970 1.19966 1.20427 1.21859 1.00937 0.97540 0.95126 1.22093 0.90810 0.88078 1.00777 1.22707 0.97919 0.92741 0.96512 0.90853 0.92332 0.93867 0.90408 0.88466 0.86945 0.94191 0.90993 0.86096 0.90057 0.90155 0.89336 0.92463 0.91886 0.93830 0.94497 0.98595 0.95525 0.96156 0.94745 0.92914 0.90401 0.89943 0.88334 0.94435 0.88197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.21 9.20 71.98 0.66 -2.55 16 2 C 0.05 0.80 6.10 86.30 0.53 1.32 16 3 N -0.53 -9.84 4.94 -895.22 -4.42 -14.25 16 4 C 0.01 0.19 5.33 86.31 0.46 0.65 16 5 C 0.06 0.95 7.01 72.01 0.50 1.46 16 6 O -0.39 -9.99 10.02 -130.10 -1.30 -11.30 16 7 C 0.08 2.00 2.36 29.88 0.07 2.07 16 8 H 0.11 2.17 7.31 -2.39 -0.02 2.15 16 9 C 0.52 15.01 7.06 87.66 0.62 15.63 16 10 O -0.57 -20.89 15.96 15.85 0.25 -20.63 16 11 N -0.60 -15.07 2.97 -818.90 -2.43 -17.51 16 12 C 0.12 2.78 6.42 86.36 0.55 3.33 16 13 C -0.12 -2.82 5.36 30.67 0.16 -2.66 16 14 C -0.09 -2.74 2.36 -10.77 -0.03 -2.77 16 15 C 0.16 5.70 5.15 86.38 0.44 6.15 16 16 N -0.62 -28.69 2.81 -726.92 -2.04 -30.73 16 17 C 0.18 8.60 8.96 127.77 1.15 9.74 16 18 C -0.24 -12.14 8.11 84.03 0.68 -11.46 16 19 H 0.08 3.83 6.86 -2.91 -0.02 3.81 16 20 C -0.06 -3.22 5.12 84.86 0.43 -2.79 16 21 N -0.95 -54.86 10.47 21.65 0.23 -54.64 16 22 Si 0.96 43.16 29.57 68.60 2.03 45.19 16 23 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 24 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 25 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 26 C -0.12 -3.33 4.48 30.67 0.14 -3.19 16 27 C 0.10 2.40 5.57 86.36 0.48 2.88 16 28 C 0.03 0.66 4.04 86.32 0.35 1.01 16 29 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.06 0.94 6.61 -2.39 -0.02 0.93 16 31 H 0.04 0.87 6.42 -2.39 -0.02 0.86 16 32 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.10 1.25 8.11 -2.39 -0.02 1.23 16 34 H 0.11 1.20 8.12 -2.38 -0.02 1.18 16 35 H 0.04 0.70 6.59 -2.39 -0.02 0.68 16 36 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.08 2.10 7.04 -2.38 -0.02 2.08 16 40 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.04 1.52 8.07 -2.38 -0.02 1.50 16 44 H 0.04 1.40 8.04 -2.39 -0.02 1.38 16 45 H 0.00 -0.23 7.45 -2.39 -0.02 -0.25 16 46 H 0.03 1.07 8.03 -2.39 -0.02 1.05 16 47 H 0.02 1.04 7.06 -2.39 -0.02 1.02 16 48 H 0.24 13.93 8.31 -92.71 -0.77 13.16 16 49 H 0.05 1.53 7.77 -2.39 -0.02 1.52 16 50 H 0.08 2.69 6.00 -2.39 -0.01 2.68 16 51 H 0.08 1.78 8.14 -2.39 -0.02 1.77 16 52 H 0.10 1.99 4.43 -2.39 -0.01 1.98 16 53 H 0.04 0.95 6.41 -2.39 -0.02 0.93 16 54 H 0.10 2.20 5.39 -2.39 -0.01 2.18 16 Total: -1.00 -67.54 397.95 0.39 -67.14 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: 0.87 Total: 17.90 kcal Atomic # 6 Polarization: 11.62 SS G_CDS: 7.21 Total: 18.83 kcal Atomic # 7 Polarization: -108.47 SS G_CDS: -8.66 Total: -117.13 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -1.05 Total: -31.93 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -67.54 0.39 -67.14 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692030246.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.176 kcal (2) G-P(sol) polarization free energy of solvation -67.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds