Wall clock time and date at job start Sat Apr 11 2020 05:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46492 * 109.47496 * 2 1 4 4 C 1.36929 * 120.00063 * 267.33694 * 3 2 1 5 5 H 1.08001 * 120.00465 * 324.41821 * 4 3 2 6 6 C 1.38816 * 120.00097 * 144.41704 * 4 3 2 7 7 N 1.31616 * 120.00178 * 337.23341 * 6 4 3 8 8 Si 1.86800 * 119.99935 * 157.22838 * 6 4 3 9 9 H 1.48497 * 109.47315 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47117 * 120.00352 * 8 6 4 11 11 H 1.48509 * 109.47251 * 240.00238 * 8 6 4 12 12 C 1.46504 * 119.99576 * 87.33554 * 3 2 1 13 13 C 1.53001 * 109.47252 * 90.00492 * 12 3 2 14 14 C 1.53036 * 109.46085 * 184.99720 * 13 12 3 15 15 C 1.53190 * 109.31042 * 178.61141 * 14 13 12 16 16 N 1.46921 * 108.77644 * 54.63741 * 15 14 13 17 17 C 1.34780 * 120.63438 * 126.36996 * 16 15 14 18 18 O 1.21280 * 120.00330 * 184.57088 * 17 16 15 19 19 C 1.50696 * 119.99626 * 4.56650 * 17 16 15 20 20 H 1.08997 * 109.50765 * 308.69091 * 19 17 16 21 21 C 1.53101 * 109.50780 * 68.78134 * 19 17 16 22 22 N 1.47015 * 109.25875 * 176.82333 * 21 19 17 23 23 C 1.46894 * 111.00223 * 177.60714 * 22 21 19 24 24 C 1.47009 * 110.75489 * 301.38455 * 22 21 19 25 25 C 1.53106 * 109.29476 * 58.59201 * 24 22 21 26 26 O 1.43016 * 109.25593 * 303.22272 * 25 24 22 27 27 C 1.46928 * 118.73790 * 306.63914 * 16 15 14 28 28 C 1.52765 * 109.00616 * 53.31039 * 27 16 15 29 29 H 1.09000 * 109.47468 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47288 * 300.00044 * 1 2 3 31 31 H 1.09003 * 109.47077 * 59.99731 * 1 2 3 32 32 H 1.08998 * 109.46940 * 239.99694 * 2 1 3 33 33 H 1.09006 * 109.46571 * 120.00241 * 2 1 3 34 34 H 0.96994 * 120.00204 * 179.97438 * 7 6 4 35 35 H 1.08992 * 109.47216 * 329.99759 * 12 3 2 36 36 H 1.09004 * 109.46705 * 209.99698 * 12 3 2 37 37 H 1.09003 * 109.45782 * 304.97037 * 13 12 3 38 38 H 1.08999 * 109.49737 * 58.66309 * 14 13 12 39 39 H 1.08995 * 109.49733 * 298.55906 * 14 13 12 40 40 H 1.08994 * 109.58995 * 294.84436 * 15 14 13 41 41 H 1.09005 * 109.70373 * 174.49314 * 15 14 13 42 42 H 1.08998 * 109.50749 * 56.88985 * 21 19 17 43 43 H 1.08997 * 109.50787 * 296.76072 * 21 19 17 44 44 H 1.08998 * 109.47502 * 179.68404 * 23 22 21 45 45 H 1.09002 * 109.47064 * 299.68423 * 23 22 21 46 46 H 1.09002 * 109.47004 * 59.67766 * 23 22 21 47 47 H 1.09007 * 109.51055 * 178.54755 * 24 22 21 48 48 H 1.08998 * 109.51159 * 298.63983 * 24 22 21 49 49 H 1.09007 * 109.50316 * 63.10707 * 25 24 22 50 50 H 1.08994 * 109.50752 * 183.23665 * 25 24 22 51 51 H 1.08999 * 109.58805 * 173.14901 * 27 16 15 52 52 H 1.09002 * 109.58421 * 293.56841 * 27 16 15 53 53 H 1.08998 * 109.55967 * 185.55084 * 28 27 16 54 54 H 1.08997 * 109.35539 * 65.50065 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2986 2.0082 -1.1845 5 1 2.7187 1.4474 -2.0064 6 6 2.0427 3.3649 -1.3292 7 7 1.1549 3.9533 -0.5560 8 14 2.9586 4.3556 -2.6212 9 1 3.8951 3.4667 -3.3546 10 1 1.9851 4.9438 -3.5759 11 1 3.7233 5.4438 -1.9604 12 6 2.2070 2.0913 1.2674 13 6 3.6311 1.8582 1.7757 14 6 3.7899 2.4954 3.1580 15 6 5.2060 2.2303 3.6785 16 7 6.1735 2.7058 2.6802 17 6 7.1508 3.5668 3.0267 18 8 7.8919 4.0163 2.1784 19 6 7.3226 3.9710 4.4682 20 1 6.3666 4.3094 4.8678 21 6 7.8201 2.7718 5.2797 22 7 8.0585 3.1913 6.6684 23 6 8.4838 2.0547 7.4961 24 6 9.0448 4.2800 6.7217 25 6 8.5361 5.4644 5.8956 26 8 8.2793 5.0304 4.5573 27 6 6.0517 2.2295 1.2956 28 6 4.6294 2.4903 0.8030 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5139 0.8900 34 1 0.9764 4.9013 -0.6568 35 1 1.4934 1.7188 2.0023 36 1 2.0463 3.1584 1.1133 37 1 3.8210 0.7871 1.8456 38 1 3.0628 2.0613 3.8443 39 1 3.6247 3.5703 3.0843 40 1 5.3422 1.1608 3.8388 41 1 5.3582 2.7627 4.6174 42 1 8.7490 2.3999 4.8473 43 1 7.0681 1.9830 5.2617 44 1 8.6587 2.3939 8.5170 45 1 7.7044 1.2926 7.4949 46 1 9.4038 1.6339 7.0903 47 1 9.1869 4.5923 7.7564 48 1 9.9935 3.9321 6.3131 49 1 7.6155 5.8470 6.3364 50 1 9.2900 6.2516 5.8853 51 1 6.7601 2.7631 0.6620 52 1 6.2583 1.1599 1.2577 53 1 4.5000 2.0526 -0.1868 54 1 4.4564 3.5652 0.7515 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700340296.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:49 Heat of formation + Delta-G solvation = -69.237028 kcal Electronic energy + Delta-G solvation = -31879.063448 eV Core-core repulsion = 27850.817509 eV Total energy + Delta-G solvation = -4028.245939 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.76797 -40.17865 -38.91159 -37.36317 -36.69235 -34.38995 -33.71708 -32.91144 -31.67218 -30.54992 -29.73055 -28.34588 -26.45241 -25.48898 -25.16842 -24.11602 -23.86608 -22.20535 -21.64276 -21.09500 -20.05881 -18.64842 -18.43398 -17.72666 -17.20749 -16.78632 -16.71187 -16.44132 -16.03995 -15.81213 -15.77293 -15.58156 -15.39231 -14.94553 -14.84236 -14.69758 -14.47064 -14.16868 -14.09658 -13.91478 -13.50388 -13.39161 -13.19549 -13.05889 -12.89124 -12.80880 -12.76575 -12.52662 -12.45071 -12.28276 -12.16708 -12.03076 -11.87364 -11.80574 -11.56377 -11.52990 -11.27050 -11.09244 -10.80676 -10.72917 -10.42137 -9.69546 -9.52621 -8.49565 -7.77061 -5.32334 1.38163 1.38794 1.46581 1.50583 1.67305 2.51000 2.68394 2.85443 3.28973 3.44831 3.60686 3.70680 3.83005 3.92376 3.96190 4.04138 4.12852 4.19448 4.24548 4.28358 4.41020 4.45991 4.49843 4.51926 4.59249 4.62332 4.64585 4.70770 4.76255 4.82844 4.84206 4.88612 4.90301 4.95459 4.99253 5.03434 5.05749 5.14872 5.28480 5.35881 5.36582 5.44664 5.54050 5.63245 5.72057 5.76410 5.77183 5.88398 5.97692 6.02085 6.34789 6.52781 7.03365 7.25122 7.98037 8.47001 9.17595 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015824 B = 0.003060 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.006182 B = 9147.940760 C =10213.208680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.138 3.862 3 N -0.598 5.598 4 C -0.240 4.240 5 H 0.053 0.947 6 C -0.025 4.025 7 N -0.912 5.912 8 Si 0.924 3.076 9 H -0.267 1.267 10 H -0.294 1.294 11 H -0.300 1.300 12 C 0.153 3.847 13 C -0.088 4.088 14 C -0.124 4.124 15 C 0.106 3.894 16 N -0.599 5.599 17 C 0.513 3.487 18 O -0.578 6.578 19 C 0.084 3.916 20 H 0.106 0.894 21 C 0.036 3.964 22 N -0.543 5.543 23 C 0.023 3.977 24 C 0.016 3.984 25 C 0.054 3.946 26 O -0.393 6.393 27 C 0.118 3.882 28 C -0.104 4.104 29 H 0.064 0.936 30 H 0.032 0.968 31 H 0.021 0.979 32 H 0.042 0.958 33 H 0.059 0.941 34 H 0.246 0.754 35 H 0.027 0.973 36 H 0.057 0.943 37 H 0.071 0.929 38 H 0.098 0.902 39 H 0.043 0.957 40 H 0.101 0.899 41 H 0.106 0.894 42 H 0.033 0.967 43 H 0.116 0.884 44 H 0.087 0.913 45 H 0.083 0.917 46 H 0.025 0.975 47 H 0.115 0.885 48 H 0.036 0.964 49 H 0.071 0.929 50 H 0.118 0.882 51 H 0.061 0.939 52 H 0.089 0.911 53 H 0.073 0.927 54 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.057 -6.123 20.728 24.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.013 3.987 3 N -0.319 5.319 4 C -0.371 4.371 5 H 0.071 0.929 6 C -0.222 4.222 7 N -0.557 5.557 8 Si 0.754 3.246 9 H -0.191 1.191 10 H -0.221 1.221 11 H -0.228 1.228 12 C 0.027 3.973 13 C -0.109 4.109 14 C -0.162 4.162 15 C -0.015 4.015 16 N -0.332 5.332 17 C 0.301 3.699 18 O -0.457 6.457 19 C 0.023 3.977 20 H 0.123 0.877 21 C -0.092 4.092 22 N -0.268 5.268 23 C -0.124 4.124 24 C -0.112 4.112 25 C -0.022 4.022 26 O -0.312 6.312 27 C -0.004 4.004 28 C -0.142 4.142 29 H 0.083 0.917 30 H 0.052 0.948 31 H 0.041 0.959 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.055 0.945 35 H 0.046 0.954 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.116 0.884 39 H 0.062 0.938 40 H 0.119 0.881 41 H 0.124 0.876 42 H 0.052 0.948 43 H 0.134 0.866 44 H 0.106 0.894 45 H 0.102 0.898 46 H 0.044 0.956 47 H 0.133 0.867 48 H 0.054 0.946 49 H 0.089 0.911 50 H 0.136 0.864 51 H 0.080 0.920 52 H 0.107 0.893 53 H 0.091 0.909 54 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 12.039 -5.512 20.308 24.243 hybrid contribution 0.725 0.872 -1.524 1.899 sum 12.764 -4.640 18.784 23.180 Atomic orbital electron populations 1.22159 0.99456 0.99879 0.99711 1.21005 0.92097 0.86270 0.99370 1.44089 1.75013 1.10828 1.02017 1.19087 1.33217 0.91894 0.92923 0.92927 1.25417 0.97811 0.99690 0.99291 1.70096 1.32562 1.10227 1.42786 0.85878 0.79015 0.79479 0.80228 1.19113 1.22133 1.22778 1.20859 0.92208 0.98950 0.85326 1.21542 0.96653 0.99139 0.93562 1.21897 0.96848 1.00511 0.96981 1.22166 0.86903 1.01772 0.90664 1.48191 1.29213 1.44765 1.11060 1.20670 0.80309 0.78276 0.90677 1.90673 1.46791 1.55114 1.53163 1.21918 0.94776 0.89821 0.91191 0.87678 1.22660 1.01624 0.96187 0.88761 1.62275 1.45498 1.10569 1.08480 1.22488 0.99730 0.92453 0.97752 1.22892 0.93253 0.92390 1.02647 1.23029 1.02166 0.96454 0.80540 1.88089 1.61487 1.52395 1.29226 1.21550 0.97392 0.99765 0.81714 1.21599 0.93206 0.98773 1.00624 0.91679 0.94847 0.95938 0.93910 0.92317 0.94492 0.95438 0.92473 0.91056 0.88412 0.93830 0.88136 0.87582 0.94846 0.86631 0.89394 0.89779 0.95598 0.86654 0.94575 0.91063 0.86436 0.92023 0.89314 0.90874 0.96324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.70 10.24 71.98 0.74 -4.96 16 2 C 0.14 5.29 6.39 86.38 0.55 5.85 16 3 N -0.60 -27.48 2.31 -702.02 -1.63 -29.10 16 4 C -0.24 -12.53 7.36 84.04 0.62 -11.91 16 5 H 0.05 2.79 7.93 -2.91 -0.02 2.76 16 6 C -0.02 -1.35 4.94 84.86 0.42 -0.93 16 7 N -0.91 -52.61 11.42 21.65 0.25 -52.37 16 8 Si 0.92 45.57 29.61 68.60 2.03 47.60 16 9 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 10 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16 11 H -0.30 -15.35 7.11 99.48 0.71 -14.65 16 12 C 0.15 6.52 4.81 86.38 0.42 6.94 16 13 C -0.09 -2.97 2.36 -10.77 -0.03 -3.00 16 14 C -0.12 -3.24 5.36 30.67 0.16 -3.07 16 15 C 0.11 2.15 5.12 86.36 0.44 2.59 16 16 N -0.60 -17.09 2.98 -819.74 -2.44 -19.53 16 17 C 0.51 16.64 7.05 87.66 0.62 17.26 16 18 O -0.58 -24.67 15.94 15.82 0.25 -24.42 16 19 C 0.08 2.08 2.36 29.88 0.07 2.15 16 20 H 0.11 2.27 7.01 -2.39 -0.02 2.25 16 21 C 0.04 0.67 4.63 86.32 0.40 1.07 16 22 N -0.54 -8.08 4.99 -921.43 -4.59 -12.68 16 23 C 0.02 0.23 9.61 127.69 1.23 1.46 16 24 C 0.02 0.23 5.66 86.32 0.49 0.72 16 25 C 0.05 0.95 7.01 72.02 0.51 1.46 16 26 O -0.39 -11.04 10.02 -130.13 -1.30 -12.34 16 27 C 0.12 3.85 6.41 86.22 0.55 4.40 16 28 C -0.10 -4.00 4.94 30.53 0.15 -3.85 16 29 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 31 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.04 1.62 8.02 -2.39 -0.02 1.60 16 33 H 0.06 1.92 8.09 -2.38 -0.02 1.90 16 34 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 35 H 0.03 1.11 8.07 -2.39 -0.02 1.09 16 36 H 0.06 2.96 5.42 -2.38 -0.01 2.95 16 37 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.11 1.65 5.01 -2.38 -0.01 1.64 16 42 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.12 1.63 6.20 -2.39 -0.01 1.61 16 44 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.03 0.28 8.14 -2.39 -0.02 0.26 16 47 H 0.12 1.02 8.14 -2.38 -0.02 1.00 16 48 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 49 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 50 H 0.12 1.64 8.14 -2.39 -0.02 1.63 16 51 H 0.06 2.31 7.00 -2.39 -0.02 2.30 16 52 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 53 H 0.07 3.18 6.26 -2.39 -0.01 3.16 16 54 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -72.39 408.55 0.75 -71.64 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 0.85 Total: 15.03 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: 7.33 Total: 16.17 kcal Atomic # 7 Polarization: -105.26 SS G_CDS: -8.41 Total: -113.68 kcal Atomic # 8 Polarization: -35.71 SS G_CDS: -1.05 Total: -36.76 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -72.39 0.75 -71.64 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700340296.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.404 kcal (2) G-P(sol) polarization free energy of solvation -72.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds