Wall clock time and date at job start Sat Apr 11 2020 05:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.47082 * 2 1 4 4 C 1.36940 * 119.99892 * 275.30987 * 3 2 1 5 5 H 1.07996 * 119.99769 * 37.57631 * 4 3 2 6 6 C 1.38809 * 119.99564 * 217.58007 * 4 3 2 7 7 N 1.31616 * 120.00627 * 21.42754 * 6 4 3 8 8 Si 1.86805 * 119.99646 * 201.43285 * 6 4 3 9 9 H 1.48492 * 109.47109 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.46964 * 119.99684 * 8 6 4 11 11 H 1.48500 * 109.46809 * 239.99620 * 8 6 4 12 12 C 1.46498 * 119.99899 * 95.31118 * 3 2 1 13 13 C 1.53003 * 109.47104 * 270.00065 * 12 3 2 14 14 C 1.52999 * 109.47264 * 180.02562 * 13 12 3 15 15 N 1.46497 * 109.47060 * 179.97438 * 14 13 12 16 16 C 1.34779 * 120.00063 * 179.72481 * 15 14 13 17 17 O 1.21284 * 119.99956 * 0.27444 * 16 15 14 18 18 C 1.50695 * 120.00184 * 180.27543 * 16 15 14 19 19 H 1.08994 * 109.47279 * 60.00163 * 18 16 15 20 20 C 1.52994 * 109.47255 * 299.99582 * 18 16 15 21 21 N 1.46503 * 109.47064 * 179.97438 * 18 16 15 22 22 C 1.34781 * 120.00206 * 205.00102 * 21 18 16 23 23 O 1.21285 * 119.99586 * 359.97438 * 22 21 18 24 24 C 1.50690 * 120.00268 * 180.02562 * 22 21 18 25 25 C 1.54264 * 110.03242 * 297.90639 * 24 22 21 26 26 C 1.54973 * 104.16060 * 217.13778 * 25 24 22 27 27 C 1.54887 * 102.77733 * 37.88442 * 26 25 24 28 28 C 1.53872 * 110.03380 * 180.68692 * 24 22 21 29 29 H 1.08996 * 109.47087 * 59.99944 * 1 2 3 30 30 H 1.08998 * 109.47054 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47116 * 300.00132 * 1 2 3 32 32 H 1.09004 * 109.47116 * 239.99868 * 2 1 3 33 33 H 1.09002 * 109.46923 * 120.00426 * 2 1 3 34 34 H 0.97000 * 120.00710 * 179.97438 * 7 6 4 35 35 H 1.08997 * 109.47032 * 150.00000 * 12 3 2 36 36 H 1.08995 * 109.47245 * 29.99649 * 12 3 2 37 37 H 1.09003 * 109.47358 * 59.99632 * 13 12 3 38 38 H 1.09009 * 109.46864 * 300.00037 * 13 12 3 39 39 H 1.08997 * 109.47115 * 59.99787 * 14 13 12 40 40 H 1.08995 * 109.47003 * 299.99533 * 14 13 12 41 41 H 0.96996 * 120.00099 * 359.97438 * 15 14 13 42 42 H 1.09008 * 109.47368 * 300.00237 * 20 18 16 43 43 H 1.09004 * 109.47232 * 59.99957 * 20 18 16 44 44 H 1.09001 * 109.47635 * 179.97438 * 20 18 16 45 45 H 0.96997 * 119.99923 * 24.99607 * 21 18 16 46 46 H 1.08999 * 110.02049 * 59.29909 * 24 22 21 47 47 H 1.09000 * 110.48504 * 335.78422 * 25 24 22 48 48 H 1.09000 * 110.48780 * 98.42957 * 25 24 22 49 49 H 1.09005 * 110.71732 * 279.57308 * 26 25 24 50 50 H 1.09004 * 110.92265 * 156.29658 * 26 25 24 51 51 H 1.08992 * 110.48790 * 203.40429 * 27 26 25 52 52 H 1.08999 * 110.59450 * 80.81676 * 27 26 25 53 53 H 1.09001 * 110.03537 * 238.56750 * 28 24 22 54 54 H 1.09004 * 110.03075 * 0.02562 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1431 2.0633 -1.1809 5 1 1.4105 1.9277 -1.9627 6 6 3.2112 2.9288 -1.3728 7 7 4.3027 2.7980 -0.6491 8 14 3.0993 4.2796 -2.6583 9 1 1.7776 4.2135 -3.3320 10 1 3.2550 5.6023 -2.0014 11 1 4.1767 4.0964 -3.6638 12 6 2.3732 2.0326 1.2633 13 6 1.1426 2.7382 1.8366 14 6 1.5133 3.4191 3.1556 15 7 0.3351 4.0951 3.7042 16 6 0.4236 4.7619 4.8721 17 8 1.4799 4.8065 5.4664 18 6 -0.7899 5.4521 5.4396 19 1 -1.5767 4.7184 5.6143 20 6 -1.2868 6.5067 4.4487 21 7 -0.4363 6.0991 6.7055 22 6 -1.3875 6.3339 7.6311 23 8 -2.5362 6.0098 7.4157 24 6 -1.0240 6.9999 8.9330 25 6 -0.0228 6.1233 9.7135 26 6 -0.4426 6.2961 11.1953 27 6 -1.9884 6.3417 11.1103 28 6 -2.2731 7.1391 9.8207 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 5.0492 3.4026 -0.7835 35 1 3.1617 2.7640 1.0859 36 1 2.7255 1.2833 1.9721 37 1 0.3541 2.0068 2.0139 38 1 0.7903 3.4876 1.1277 39 1 2.3016 4.1505 2.9779 40 1 1.8658 2.6700 3.8646 41 1 -0.5096 4.0598 3.2288 42 1 -0.4999 7.2405 4.2740 43 1 -1.5499 6.0250 3.5070 44 1 -2.1648 7.0056 4.8589 45 1 0.4824 6.3585 6.8776 46 1 -0.5906 7.9816 8.7418 47 1 -0.1126 5.0800 9.4109 48 1 0.9960 6.4796 9.5609 49 1 -0.0503 7.2287 11.6010 50 1 -0.1135 5.4471 11.7946 51 1 -2.4031 6.8568 11.9767 52 1 -2.3982 5.3345 11.0343 53 1 -2.4454 8.1883 10.0609 54 1 -3.1422 6.7245 9.3100 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713014193.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:29 Heat of formation + Delta-G solvation = -102.184643 kcal Electronic energy + Delta-G solvation = -29740.881143 eV Core-core repulsion = 25711.206487 eV Total energy + Delta-G solvation = -4029.674655 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.65376 -40.58742 -38.26628 -38.03240 -36.36868 -36.02705 -33.81671 -33.15273 -31.87736 -30.23353 -29.74624 -29.47064 -27.23417 -25.86521 -24.88808 -22.94591 -22.52095 -22.02653 -21.58869 -21.23213 -20.64764 -18.91807 -18.63092 -17.82575 -17.41246 -17.03209 -16.83276 -16.61350 -16.35158 -15.91255 -15.82870 -15.48425 -15.20333 -15.08043 -14.68585 -14.55753 -14.26667 -14.21901 -14.06319 -13.69371 -13.40818 -13.23159 -13.16438 -12.82345 -12.75568 -12.71858 -12.64651 -12.57169 -12.29937 -12.27139 -12.12396 -12.03187 -11.95486 -11.92009 -11.68064 -11.45759 -11.41941 -11.24581 -11.03994 -10.84390 -10.49839 -10.29695 -10.15477 -8.53824 -7.80232 -5.44271 1.41954 1.44229 1.48546 1.53297 1.57781 1.77462 2.34952 2.51697 3.24489 3.45060 3.53333 3.65340 3.67315 3.78544 3.95697 4.03609 4.17223 4.23521 4.30832 4.45485 4.46284 4.52787 4.54627 4.55147 4.60759 4.67913 4.72510 4.74836 4.77747 4.79031 4.89222 4.97060 4.98972 5.04924 5.08123 5.11293 5.16959 5.21893 5.23170 5.25329 5.33993 5.36251 5.43226 5.46279 5.47387 5.61036 5.70983 5.85699 6.40809 6.43087 6.49291 7.05846 7.13145 7.19967 7.89656 8.42128 9.14463 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.018030 B = 0.001937 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.590505 B =14450.299621 C =14831.619187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.133 3.867 3 N -0.601 5.601 4 C -0.261 4.261 5 H 0.055 0.945 6 C -0.036 4.036 7 N -0.918 5.918 8 Si 0.953 3.047 9 H -0.267 1.267 10 H -0.289 1.289 11 H -0.294 1.294 12 C 0.150 3.850 13 C -0.124 4.124 14 C 0.134 3.866 15 N -0.708 5.708 16 C 0.509 3.491 17 O -0.573 6.573 18 C 0.130 3.870 19 H 0.114 0.886 20 C -0.154 4.154 21 N -0.709 5.709 22 C 0.521 3.479 23 O -0.574 6.574 24 C -0.109 4.109 25 C -0.116 4.116 26 C -0.120 4.120 27 C -0.125 4.125 28 C -0.119 4.119 29 H 0.036 0.964 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.028 0.972 33 H 0.044 0.956 34 H 0.251 0.749 35 H 0.060 0.940 36 H 0.027 0.973 37 H 0.069 0.931 38 H 0.054 0.946 39 H 0.049 0.951 40 H 0.061 0.939 41 H 0.415 0.585 42 H 0.064 0.936 43 H 0.089 0.911 44 H 0.072 0.928 45 H 0.414 0.586 46 H 0.121 0.879 47 H 0.053 0.947 48 H 0.088 0.912 49 H 0.084 0.916 50 H 0.072 0.928 51 H 0.080 0.920 52 H 0.053 0.947 53 H 0.083 0.917 54 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.489 8.862 20.871 25.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.008 3.992 3 N -0.323 5.323 4 C -0.392 4.392 5 H 0.072 0.928 6 C -0.234 4.234 7 N -0.562 5.562 8 Si 0.782 3.218 9 H -0.191 1.191 10 H -0.216 1.216 11 H -0.221 1.221 12 C 0.024 3.976 13 C -0.165 4.165 14 C 0.010 3.990 15 N -0.360 5.360 16 C 0.295 3.705 17 O -0.453 6.453 18 C 0.021 3.979 19 H 0.132 0.868 20 C -0.212 4.212 21 N -0.362 5.362 22 C 0.309 3.691 23 O -0.454 6.454 24 C -0.130 4.130 25 C -0.154 4.154 26 C -0.157 4.157 27 C -0.162 4.162 28 C -0.157 4.157 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.047 0.953 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.078 0.922 36 H 0.045 0.955 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.252 0.748 42 H 0.083 0.917 43 H 0.107 0.893 44 H 0.091 0.909 45 H 0.252 0.748 46 H 0.139 0.861 47 H 0.072 0.928 48 H 0.106 0.894 49 H 0.103 0.897 50 H 0.091 0.909 51 H 0.099 0.901 52 H 0.072 0.928 53 H 0.101 0.899 54 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.386 8.696 21.083 25.952 hybrid contribution 0.460 0.549 -1.192 1.391 sum -11.925 9.245 19.891 24.967 Atomic orbital electron populations 1.22169 0.97260 1.00742 1.00858 1.21001 0.93838 0.85769 0.98591 1.43991 1.76435 1.09522 1.02312 1.19199 1.04049 1.21098 0.94841 0.92767 1.25841 0.94045 1.03366 1.00129 1.70130 1.03790 1.38097 1.44173 0.85443 0.77682 0.79660 0.79061 1.19115 1.21558 1.22087 1.20700 0.95329 0.96113 0.85502 1.22184 1.00662 0.99615 0.93993 1.21170 0.87353 0.95607 0.94908 1.45921 1.14645 1.52756 1.22633 1.20908 0.90021 0.78589 0.80968 1.90685 1.31532 1.62399 1.60656 1.20746 0.94515 0.96777 0.85863 0.86819 1.22105 1.02068 0.98416 0.98615 1.45820 1.12989 1.61190 1.16167 1.21141 0.84463 0.77859 0.85591 1.90653 1.21092 1.53705 1.79927 1.22030 0.98919 1.01060 0.90999 1.22393 0.98619 0.98700 0.95654 1.22520 0.95142 1.02937 0.95099 1.22373 0.96502 0.99937 0.97434 1.22172 0.96605 1.01668 0.95278 0.94502 0.91756 0.92959 0.95338 0.93726 0.94008 0.92164 0.95463 0.91217 0.92716 0.93295 0.92041 0.74800 0.91707 0.89263 0.90922 0.74847 0.86084 0.92827 0.89381 0.89688 0.90889 0.90106 0.92775 0.89855 0.91642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.94 10.21 71.98 0.73 -4.20 16 2 C 0.13 5.37 6.44 86.38 0.56 5.92 16 3 N -0.60 -28.56 2.43 -702.00 -1.71 -30.27 16 4 C -0.26 -13.81 9.45 84.03 0.79 -13.02 16 5 H 0.05 2.88 7.92 -2.91 -0.02 2.85 16 6 C -0.04 -1.97 4.95 84.86 0.42 -1.55 16 7 N -0.92 -52.69 11.47 21.65 0.25 -52.44 16 8 Si 0.95 43.55 29.60 68.60 2.03 45.58 16 9 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 10 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 11 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 12 C 0.15 6.64 5.33 86.38 0.46 7.10 16 13 C -0.12 -4.28 5.65 30.59 0.17 -4.10 16 14 C 0.13 4.16 5.67 86.38 0.49 4.65 16 15 N -0.71 -17.38 5.45 -463.08 -2.52 -19.90 16 16 C 0.51 13.07 7.22 87.66 0.63 13.71 16 17 O -0.57 -18.63 15.84 -3.04 -0.05 -18.68 16 18 C 0.13 2.66 2.98 44.24 0.13 2.80 16 19 H 0.11 2.37 7.58 -2.39 -0.02 2.35 16 20 C -0.15 -2.63 9.38 71.98 0.68 -1.95 16 21 N -0.71 -14.09 4.89 -446.12 -2.18 -16.27 16 22 C 0.52 10.82 6.96 87.65 0.61 11.43 16 23 O -0.57 -15.68 14.87 -3.04 -0.05 -15.72 16 24 C -0.11 -1.57 3.29 -10.82 -0.04 -1.61 16 25 C -0.12 -1.52 6.30 31.70 0.20 -1.32 16 26 C -0.12 -1.26 6.91 31.91 0.22 -1.04 16 27 C -0.12 -1.55 6.83 31.67 0.22 -1.33 16 28 C -0.12 -1.75 6.40 31.32 0.20 -1.55 16 29 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.05 1.61 6.64 -2.39 -0.02 1.59 16 32 H 0.03 1.20 8.08 -2.39 -0.02 1.18 16 33 H 0.04 1.67 7.83 -2.39 -0.02 1.65 16 34 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 35 H 0.06 3.13 5.52 -2.39 -0.01 3.12 16 36 H 0.03 1.16 7.86 -2.39 -0.02 1.14 16 37 H 0.07 2.16 6.64 -2.39 -0.02 2.15 16 38 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 39 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.42 7.93 7.89 -92.71 -0.73 7.20 16 42 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 43 H 0.09 1.25 7.56 -2.38 -0.02 1.24 16 44 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.41 7.77 7.77 -92.71 -0.72 7.05 16 46 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 47 H 0.05 0.90 7.85 -2.39 -0.02 0.88 16 48 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 49 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 50 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 51 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 52 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 53 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 54 H 0.06 1.31 6.39 -2.38 -0.02 1.30 16 Total: -1.00 -67.85 427.70 1.68 -66.16 By element: Atomic # 1 Polarization: 28.17 SS G_CDS: -0.57 Total: 27.60 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: 6.48 Total: 13.94 kcal Atomic # 7 Polarization: -112.72 SS G_CDS: -6.17 Total: -118.88 kcal Atomic # 8 Polarization: -34.31 SS G_CDS: -0.09 Total: -34.40 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -67.85 1.68 -66.16 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713014193.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.022 kcal (2) G-P(sol) polarization free energy of solvation -67.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds