Wall clock time and date at job start Sat Apr 11 2020 05:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.46808 * 2 1 4 4 C 1.36931 * 120.00363 * 275.31050 * 3 2 1 5 5 H 1.07998 * 119.99783 * 37.58014 * 4 3 2 6 6 C 1.38807 * 120.00093 * 217.58182 * 4 3 2 7 7 N 1.31626 * 120.00027 * 21.42315 * 6 4 3 8 8 Si 1.86802 * 120.00241 * 201.42486 * 6 4 3 9 9 H 1.48503 * 109.46795 * 89.99694 * 8 6 4 10 10 H 1.48498 * 109.47556 * 209.99665 * 8 6 4 11 11 H 1.48499 * 109.47166 * 330.00113 * 8 6 4 12 12 C 1.46504 * 119.99384 * 95.31269 * 3 2 1 13 13 C 1.52997 * 109.47047 * 269.99732 * 12 3 2 14 14 C 1.53006 * 109.47240 * 180.02562 * 13 12 3 15 15 N 1.46493 * 109.47236 * 179.97438 * 14 13 12 16 16 C 1.34780 * 120.00018 * 179.97438 * 15 14 13 17 17 O 1.21276 * 119.99770 * 0.02562 * 16 15 14 18 18 C 1.50697 * 120.00312 * 180.02562 * 16 15 14 19 19 N 1.46492 * 109.47476 * 180.02562 * 18 16 15 20 20 C 1.34771 * 120.00284 * 179.97438 * 19 18 16 21 21 O 1.21280 * 119.99868 * 0.02562 * 20 19 18 22 22 C 1.50699 * 120.00402 * 179.97438 * 20 19 18 23 23 C 1.52998 * 109.46892 * 60.00004 * 22 20 19 24 24 C 1.53009 * 109.47059 * 180.02562 * 23 22 20 25 25 C 1.52997 * 109.47003 * 300.00070 * 24 23 22 26 26 C 1.52998 * 109.47270 * 60.00059 * 25 24 23 27 27 C 1.52999 * 109.47087 * 299.99796 * 26 25 24 28 28 H 1.09003 * 109.47539 * 59.99460 * 1 2 3 29 29 H 1.09003 * 109.47376 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47173 * 299.99633 * 1 2 3 31 31 H 1.08996 * 109.46492 * 240.00592 * 2 1 3 32 32 H 1.08995 * 109.46934 * 120.00453 * 2 1 3 33 33 H 0.97001 * 119.99572 * 180.02562 * 7 6 4 34 34 H 1.09004 * 109.46647 * 149.99504 * 12 3 2 35 35 H 1.08999 * 109.47149 * 29.99692 * 12 3 2 36 36 H 1.08994 * 109.47408 * 60.00345 * 13 12 3 37 37 H 1.09009 * 109.47219 * 299.99988 * 13 12 3 38 38 H 1.09004 * 109.47004 * 59.99435 * 14 13 12 39 39 H 1.08999 * 109.46599 * 299.99741 * 14 13 12 40 40 H 0.97003 * 120.00124 * 359.97438 * 15 14 13 41 41 H 1.09006 * 109.46965 * 59.99795 * 18 16 15 42 42 H 1.08999 * 109.47103 * 300.00767 * 18 16 15 43 43 H 0.97000 * 120.00203 * 0.02562 * 19 18 16 44 44 H 1.09000 * 109.47332 * 299.99960 * 22 20 19 45 45 H 1.08998 * 109.47136 * 300.00214 * 23 22 20 46 46 H 1.08999 * 109.47330 * 60.00380 * 23 22 20 47 47 H 1.09004 * 109.46884 * 179.97438 * 24 23 22 48 48 H 1.08997 * 109.47073 * 60.00421 * 24 23 22 49 49 H 1.08999 * 109.47113 * 299.99719 * 25 24 23 50 50 H 1.09000 * 109.47123 * 180.02562 * 25 24 23 51 51 H 1.08998 * 109.47136 * 179.97438 * 26 25 24 52 52 H 1.08999 * 109.47330 * 59.99793 * 26 25 24 53 53 H 1.09000 * 109.47543 * 300.00293 * 27 26 25 54 54 H 1.08997 * 109.47487 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1430 2.0634 -1.1807 5 1 1.4104 1.9279 -1.9626 6 6 3.2110 2.9290 -1.3727 7 7 4.3026 2.7981 -0.6489 8 14 3.0992 4.2797 -2.6583 9 1 2.5374 5.5070 -2.0391 10 1 4.4548 4.5699 -3.1907 11 1 2.2165 3.8360 -3.7670 12 6 2.3731 2.0326 1.2634 13 6 1.1425 2.7381 1.8367 14 6 1.5132 3.4189 3.1558 15 7 0.3351 4.0949 3.7045 16 6 0.4248 4.7659 4.8699 17 8 1.4811 4.8104 5.4642 18 6 -0.7872 5.4608 5.4347 19 7 -0.4323 6.1127 6.6976 20 6 -1.3645 6.8003 7.3864 21 8 -2.4975 6.8789 6.9609 22 6 -0.9995 7.4705 8.6859 23 6 0.1077 8.4966 8.4370 24 6 0.4787 9.1766 9.7565 25 6 -0.7515 9.8827 10.3300 26 6 -1.8587 8.8565 10.5788 27 6 -2.2298 8.1766 9.2594 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8932 -0.5137 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 5.0487 3.4033 -0.7829 34 1 3.1616 2.7640 1.0861 35 1 2.7254 1.2832 1.9722 36 1 0.3541 2.0067 2.0140 37 1 0.7902 3.4876 1.1279 38 1 2.3016 4.1504 2.9782 39 1 1.8657 2.6697 3.8648 40 1 -0.5097 4.0596 3.2290 41 1 -1.5757 4.7293 5.6120 42 1 -1.1396 6.2101 4.7258 43 1 0.4740 6.0502 7.0377 44 1 -0.6477 6.7211 9.3949 45 1 0.9842 7.9935 8.0289 46 1 -0.2441 9.2461 7.7281 47 1 1.2679 9.9074 9.5793 48 1 0.8308 8.4270 10.4652 49 1 -1.1034 10.6323 9.6213 50 1 -0.4871 10.3675 11.2697 51 1 -2.7350 9.3595 10.9878 52 1 -1.5068 8.1069 11.2875 53 1 -2.5817 8.9262 8.5507 54 1 -3.0182 7.4452 9.4367 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713029007.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:33 Heat of formation + Delta-G solvation = -110.985370 kcal Electronic energy + Delta-G solvation = -29236.298421 eV Core-core repulsion = 25206.242138 eV Total energy + Delta-G solvation = -4030.056283 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.50560 -40.59223 -38.53953 -38.18343 -36.34340 -35.53941 -33.81536 -32.94727 -32.21410 -31.62729 -30.37848 -28.95835 -26.82290 -25.24187 -24.28919 -23.43065 -22.56628 -22.10408 -21.53183 -21.46850 -20.62088 -18.86236 -18.62967 -17.60152 -17.21791 -17.20744 -16.91105 -16.54975 -16.31167 -15.91587 -15.71087 -15.36523 -15.17437 -15.03019 -14.99101 -14.71653 -14.28485 -14.26574 -14.05856 -13.78904 -13.52904 -13.24444 -13.22326 -13.15616 -13.08794 -12.74194 -12.72342 -12.58063 -12.32764 -12.24313 -12.13344 -12.04433 -11.92889 -11.57999 -11.46329 -11.36123 -11.25272 -11.13751 -11.01159 -10.75688 -10.49583 -10.32001 -10.13012 -8.54313 -7.80654 -5.44831 1.42483 1.44980 1.48038 1.55359 1.55560 1.73822 2.40161 2.51363 3.23941 3.51760 3.62955 3.67621 3.74639 3.78214 4.15560 4.20200 4.25409 4.28154 4.30729 4.31291 4.37632 4.45695 4.45929 4.55330 4.55464 4.59417 4.70516 4.74517 4.77806 4.89504 4.96686 4.99229 5.04927 5.11140 5.15645 5.17178 5.21096 5.24728 5.25878 5.34186 5.35818 5.36939 5.40210 5.47514 5.55768 5.61148 5.70518 5.85677 6.39867 6.42905 6.48763 7.06417 7.11948 7.19651 7.89527 8.41655 9.13720 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.017392 B = 0.001768 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.569988 B =15833.656822 C =16570.610769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.133 3.867 3 N -0.601 5.601 4 C -0.262 4.262 5 H 0.054 0.946 6 C -0.036 4.036 7 N -0.917 5.917 8 Si 0.953 3.047 9 H -0.285 1.285 10 H -0.296 1.296 11 H -0.270 1.270 12 C 0.150 3.850 13 C -0.125 4.125 14 C 0.134 3.866 15 N -0.709 5.709 16 C 0.508 3.492 17 O -0.575 6.575 18 C 0.104 3.896 19 N -0.715 5.715 20 C 0.518 3.482 21 O -0.577 6.577 22 C -0.099 4.099 23 C -0.110 4.110 24 C -0.116 4.116 25 C -0.122 4.122 26 C -0.115 4.115 27 C -0.097 4.097 28 H 0.035 0.965 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.028 0.972 32 H 0.045 0.955 33 H 0.251 0.749 34 H 0.060 0.940 35 H 0.028 0.972 36 H 0.071 0.929 37 H 0.051 0.949 38 H 0.047 0.953 39 H 0.064 0.936 40 H 0.417 0.583 41 H 0.114 0.886 42 H 0.108 0.892 43 H 0.415 0.585 44 H 0.116 0.884 45 H 0.072 0.928 46 H 0.058 0.942 47 H 0.071 0.929 48 H 0.074 0.926 49 H 0.056 0.944 50 H 0.074 0.926 51 H 0.070 0.930 52 H 0.072 0.928 53 H 0.054 0.946 54 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.928 9.752 22.297 27.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.008 3.992 3 N -0.323 5.323 4 C -0.393 4.393 5 H 0.072 0.928 6 C -0.233 4.233 7 N -0.561 5.561 8 Si 0.782 3.218 9 H -0.212 1.212 10 H -0.223 1.223 11 H -0.194 1.194 12 C 0.023 3.977 13 C -0.165 4.165 14 C 0.009 3.991 15 N -0.361 5.361 16 C 0.295 3.705 17 O -0.456 6.456 18 C -0.023 4.023 19 N -0.370 5.370 20 C 0.306 3.694 21 O -0.457 6.457 22 C -0.120 4.120 23 C -0.148 4.148 24 C -0.153 4.153 25 C -0.160 4.160 26 C -0.153 4.153 27 C -0.135 4.135 28 H 0.054 0.946 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.046 0.954 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.047 0.953 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.083 0.917 40 H 0.254 0.746 41 H 0.131 0.869 42 H 0.126 0.874 43 H 0.254 0.746 44 H 0.134 0.866 45 H 0.090 0.910 46 H 0.077 0.923 47 H 0.090 0.910 48 H 0.093 0.907 49 H 0.075 0.925 50 H 0.092 0.908 51 H 0.089 0.911 52 H 0.091 0.909 53 H 0.072 0.928 54 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.803 9.857 22.353 27.132 hybrid contribution 0.377 0.496 -1.244 1.391 sum -11.426 10.353 21.109 26.141 Atomic orbital electron populations 1.22172 0.97253 1.00759 1.00856 1.21000 0.93842 0.85724 0.98624 1.43987 1.76442 1.09539 1.02295 1.19178 1.04048 1.21176 0.94905 0.92790 1.25834 0.94035 1.03320 1.00134 1.70131 1.03766 1.38011 1.44222 0.85496 0.76530 0.80169 0.79636 1.21150 1.22296 1.19422 1.20708 0.95323 0.96136 0.85524 1.22186 1.00704 0.99595 0.94011 1.21170 0.87320 0.95622 0.94939 1.45896 1.14722 1.52650 1.22834 1.20822 0.90044 0.78636 0.81026 1.90684 1.31576 1.62605 1.60685 1.21081 0.94767 0.98749 0.87720 1.45808 1.15115 1.53346 1.22731 1.21224 0.84109 0.77478 0.86584 1.90686 1.21901 1.62241 1.70868 1.21387 0.98685 0.98870 0.93068 1.21547 0.96799 0.97398 0.99093 1.21529 0.97939 1.00056 0.95797 1.21580 0.95237 0.97848 1.01321 1.21541 0.99045 0.98598 0.96110 1.21321 0.95515 0.99303 0.97377 0.94572 0.91720 0.92903 0.95372 0.93623 0.94011 0.92232 0.95311 0.91060 0.92974 0.93494 0.91736 0.74627 0.86859 0.87437 0.74624 0.86622 0.90978 0.92339 0.91021 0.90732 0.92494 0.90758 0.91131 0.90913 0.92753 0.92168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.91 10.21 71.98 0.73 -4.17 16 2 C 0.13 5.34 6.44 86.38 0.56 5.90 16 3 N -0.60 -28.52 2.43 -702.02 -1.71 -30.23 16 4 C -0.26 -13.91 9.45 84.03 0.79 -13.11 16 5 H 0.05 2.87 7.92 -2.91 -0.02 2.85 16 6 C -0.04 -1.94 4.95 84.86 0.42 -1.52 16 7 N -0.92 -52.76 11.47 21.65 0.25 -52.51 16 8 Si 0.95 43.81 29.60 68.60 2.03 45.84 16 9 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 10 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 11 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 12 C 0.15 6.60 5.33 86.38 0.46 7.06 16 13 C -0.12 -4.27 5.65 30.60 0.17 -4.10 16 14 C 0.13 4.10 5.67 86.38 0.49 4.59 16 15 N -0.71 -16.82 5.56 -463.07 -2.57 -19.39 16 16 C 0.51 12.39 7.90 87.66 0.69 13.09 16 17 O -0.58 -18.04 15.67 -3.02 -0.05 -18.09 16 18 C 0.10 1.98 6.15 85.63 0.53 2.50 16 19 N -0.72 -13.81 5.42 -466.81 -2.53 -16.34 16 20 C 0.52 10.63 7.15 87.66 0.63 11.26 16 21 O -0.58 -15.83 15.98 -3.03 -0.05 -15.88 16 22 C -0.10 -1.43 2.52 -11.54 -0.03 -1.46 16 23 C -0.11 -1.40 5.10 30.60 0.16 -1.24 16 24 C -0.12 -1.11 5.92 30.60 0.18 -0.93 16 25 C -0.12 -1.16 5.92 30.59 0.18 -0.98 16 26 C -0.12 -1.17 5.92 30.59 0.18 -0.99 16 27 C -0.10 -1.44 4.49 30.59 0.14 -1.30 16 28 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.05 1.61 6.64 -2.39 -0.02 1.59 16 31 H 0.03 1.18 8.08 -2.39 -0.02 1.17 16 32 H 0.05 1.69 7.83 -2.39 -0.02 1.67 16 33 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 34 H 0.06 3.09 5.52 -2.39 -0.01 3.08 16 35 H 0.03 1.21 7.86 -2.39 -0.02 1.19 16 36 H 0.07 2.18 6.64 -2.39 -0.02 2.16 16 37 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 38 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.42 7.56 8.47 -92.71 -0.79 6.77 16 41 H 0.11 1.87 8.14 -2.38 -0.02 1.85 16 42 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.42 7.73 6.85 -92.71 -0.64 7.09 16 44 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.07 0.89 7.56 -2.39 -0.02 0.87 16 46 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 48 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 49 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 50 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 51 H 0.07 0.65 8.14 -2.39 -0.02 0.64 16 52 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 53 H 0.05 0.97 8.10 -2.39 -0.02 0.95 16 54 H 0.06 1.00 8.10 -2.39 -0.02 0.98 16 Total: -1.00 -68.09 426.28 1.11 -66.98 By element: Atomic # 1 Polarization: 25.58 SS G_CDS: -0.54 Total: 25.04 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: 6.28 Total: 14.58 kcal Atomic # 7 Polarization: -111.91 SS G_CDS: -6.56 Total: -118.48 kcal Atomic # 8 Polarization: -33.87 SS G_CDS: -0.10 Total: -33.96 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -68.09 1.11 -66.98 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713029007.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.003 kcal (2) G-P(sol) polarization free energy of solvation -68.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds