Wall clock time and date at job start Sat Apr 11 2020 05:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 5 5 C 1.34777 * 120.00376 * 275.00479 * 4 2 1 6 6 O 1.21279 * 119.99824 * 359.97438 * 5 4 2 7 7 C 1.50699 * 120.00179 * 179.97438 * 5 4 2 8 8 C 1.52999 * 109.47204 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.46840 * 60.00474 * 8 7 5 10 10 C 1.53002 * 109.47249 * 179.97438 * 8 7 5 11 11 C 1.52995 * 109.47248 * 299.99819 * 8 7 5 12 12 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 13 13 O 1.21277 * 120.00304 * 240.00314 * 12 2 1 14 14 N 1.34778 * 119.99637 * 59.99942 * 12 2 1 15 15 C 1.46505 * 119.99943 * 180.02562 * 14 12 2 16 16 C 1.52993 * 109.47021 * 180.02562 * 15 14 12 17 17 H 1.08999 * 109.47626 * 294.99673 * 16 15 14 18 18 N 1.46494 * 109.47296 * 55.00280 * 16 15 14 19 19 C 1.36944 * 119.99971 * 204.99898 * 18 16 15 20 20 H 1.08005 * 119.99781 * 359.97438 * 19 18 16 21 21 C 1.38811 * 120.00094 * 179.97438 * 19 18 16 22 22 N 1.31621 * 119.99977 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00062 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47334 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47047 * 120.00293 * 23 21 19 26 26 H 1.48502 * 109.47260 * 240.00561 * 23 21 19 27 27 C 1.53009 * 109.47000 * 175.00316 * 16 15 14 28 28 C 1.53002 * 117.49379 * 248.74533 * 27 16 15 29 29 C 1.52993 * 117.49889 * 180.08783 * 27 16 15 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 33 33 H 0.97006 * 119.99921 * 94.99902 * 4 2 1 34 34 H 1.08995 * 109.47183 * 300.00111 * 7 5 4 35 35 H 1.09009 * 109.47183 * 59.99391 * 7 5 4 36 36 H 1.08999 * 109.47636 * 59.99869 * 9 8 7 37 37 H 1.09001 * 109.47050 * 180.02562 * 9 8 7 38 38 H 1.09001 * 109.46618 * 299.99627 * 9 8 7 39 39 H 1.09009 * 109.46937 * 59.99935 * 10 8 7 40 40 H 1.08994 * 109.47343 * 180.02562 * 10 8 7 41 41 H 1.08995 * 109.47384 * 300.00682 * 10 8 7 42 42 H 1.09001 * 109.46855 * 60.00343 * 11 8 7 43 43 H 1.09001 * 109.47252 * 179.97438 * 11 8 7 44 44 H 1.08999 * 109.47491 * 299.99846 * 11 8 7 45 45 H 0.97000 * 120.00446 * 0.02562 * 14 12 2 46 46 H 1.09000 * 109.47120 * 300.00214 * 15 14 12 47 47 H 1.09002 * 109.46801 * 59.99643 * 15 14 12 48 48 H 0.97000 * 120.00046 * 24.99697 * 18 16 15 49 49 H 0.96994 * 119.99924 * 179.97438 * 22 21 19 50 50 H 1.08995 * 115.55331 * 34.41050 * 27 16 15 51 51 H 1.08997 * 117.50504 * 359.97438 * 28 27 16 52 52 H 1.09001 * 117.49474 * 145.01936 * 28 27 16 53 53 H 1.09000 * 117.50312 * 214.97477 * 29 27 16 54 54 H 1.09002 * 117.49975 * 359.97252 * 29 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8589 1.1587 2.4115 7 6 2.6488 -0.7286 3.5878 8 6 2.7009 0.2546 4.7588 9 6 1.2986 0.8060 5.0245 10 6 3.2098 -0.4668 6.0084 11 6 3.6457 1.4078 4.4148 12 6 2.0324 -0.7104 -1.2304 13 8 2.7296 -1.6965 -1.1191 14 7 1.7068 -0.2500 -2.4545 15 6 2.1947 -0.9409 -3.6507 16 6 1.6853 -0.2192 -4.8999 17 1 0.5990 -0.2954 -4.9460 18 7 2.0740 1.1920 -4.8412 19 6 1.3470 2.1313 -5.5228 20 1 0.4874 1.8316 -6.1040 21 6 1.7149 3.4686 -5.4668 22 7 2.7628 3.8338 -4.7589 23 14 0.7238 4.7497 -6.3971 24 1 -0.3967 4.0863 -7.1111 25 1 0.1793 5.7456 -5.4395 26 1 1.6003 5.4359 -7.3800 27 6 2.2950 -0.8647 -6.1460 28 6 3.3109 -0.0429 -6.9420 29 6 1.9077 -0.2801 -7.5057 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 2.2490 -1.6317 1.1527 34 1 1.9759 -1.5505 3.8326 35 1 3.6480 -1.1213 3.3986 36 1 0.6255 -0.0155 5.2696 37 1 1.3358 1.5069 5.8584 38 1 0.9357 1.3199 4.1343 39 1 4.2087 -0.8601 5.8194 40 1 3.2464 0.2335 6.8427 41 1 2.5364 -1.2882 6.2533 42 1 3.2827 1.9217 3.5248 43 1 3.6825 2.1085 5.2489 44 1 4.6447 1.0149 4.2256 45 1 1.1494 0.5389 -2.5436 46 1 3.2847 -0.9413 -3.6508 47 1 1.8310 -1.9684 -3.6505 48 1 2.8462 1.4611 -4.3195 49 1 3.0200 4.7682 -4.7200 50 1 2.4536 -1.9415 -6.0879 51 1 3.5446 0.9576 -6.5782 52 1 4.1376 -0.5792 -7.4078 53 1 1.8118 -0.9721 -8.3424 54 1 1.2182 0.5641 -7.5127 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713122476.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:48 Heat of formation + Delta-G solvation = -69.455669 kcal Electronic energy + Delta-G solvation = -30461.539628 eV Core-core repulsion = 26433.284208 eV Total energy + Delta-G solvation = -4028.255420 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.57240 -40.58737 -39.17730 -37.62412 -36.01509 -35.81090 -35.08248 -32.90960 -31.95461 -29.74039 -28.84382 -28.07722 -27.98840 -26.03083 -25.23175 -23.85991 -22.95470 -21.75681 -21.30757 -20.61210 -19.93832 -19.23212 -18.61113 -17.74865 -17.23972 -16.90873 -16.44616 -16.36932 -16.19136 -16.14550 -15.49781 -15.39680 -15.24555 -15.16598 -14.96729 -14.52060 -14.41660 -14.08518 -13.73684 -13.50312 -13.37230 -12.99698 -12.94459 -12.90003 -12.88782 -12.65449 -12.63981 -12.63286 -12.56364 -12.18324 -12.09795 -11.99252 -11.91961 -11.61034 -11.59058 -11.50868 -11.06942 -11.03490 -10.80060 -10.60825 -10.46967 -10.14491 -10.02014 -8.98669 -7.88366 -5.15520 1.47913 1.49974 1.51037 1.57700 1.66268 1.88209 2.46932 2.58691 3.14643 3.46565 3.58308 3.73719 3.88054 3.88704 3.95835 3.99559 4.05489 4.12563 4.28940 4.31891 4.35370 4.51454 4.59246 4.60712 4.63590 4.67684 4.68333 4.70923 4.79455 4.87501 4.89248 4.93812 4.98267 5.01187 5.11634 5.14065 5.20119 5.20165 5.21513 5.25897 5.37825 5.41246 5.42557 5.52425 5.56267 5.68162 5.69627 5.70830 6.31908 6.49902 6.55449 7.11729 7.29859 7.40554 8.11739 8.36006 9.34099 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013605 B = 0.002472 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.566940 B =11324.407472 C =12608.102189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.129 3.871 3 H 0.096 0.904 4 N -0.709 5.709 5 C 0.511 3.489 6 O -0.561 6.561 7 C -0.127 4.127 8 C -0.052 4.052 9 C -0.151 4.151 10 C -0.137 4.137 11 C -0.154 4.154 12 C 0.513 3.487 13 O -0.573 6.573 14 N -0.704 5.704 15 C 0.129 3.871 16 C 0.191 3.809 17 H 0.064 0.936 18 N -0.720 5.720 19 C -0.213 4.213 20 H 0.078 0.922 21 C -0.068 4.068 22 N -0.964 5.964 23 Si 0.954 3.046 24 H -0.266 1.266 25 H -0.300 1.300 26 H -0.304 1.304 27 C -0.166 4.166 28 C -0.175 4.175 29 C -0.171 4.171 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.414 0.586 34 H 0.118 0.882 35 H 0.108 0.892 36 H 0.058 0.942 37 H 0.050 0.950 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.067 0.933 42 H 0.055 0.945 43 H 0.052 0.948 44 H 0.051 0.949 45 H 0.411 0.589 46 H 0.051 0.949 47 H 0.086 0.914 48 H 0.373 0.627 49 H 0.246 0.754 50 H 0.117 0.883 51 H 0.076 0.924 52 H 0.090 0.910 53 H 0.101 0.899 54 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.042 -14.395 15.450 21.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.020 3.980 3 H 0.114 0.886 4 N -0.363 5.363 5 C 0.300 3.700 6 O -0.440 6.440 7 C -0.166 4.166 8 C -0.052 4.052 9 C -0.208 4.208 10 C -0.194 4.194 11 C -0.211 4.211 12 C 0.299 3.701 13 O -0.454 6.454 14 N -0.354 5.354 15 C 0.004 3.996 16 C 0.082 3.918 17 H 0.082 0.918 18 N -0.360 5.360 19 C -0.345 4.345 20 H 0.096 0.904 21 C -0.260 4.260 22 N -0.615 5.615 23 Si 0.786 3.214 24 H -0.191 1.191 25 H -0.228 1.228 26 H -0.232 1.232 27 C -0.187 4.187 28 C -0.213 4.213 29 C -0.208 4.208 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.252 0.748 34 H 0.136 0.864 35 H 0.126 0.874 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.248 0.752 46 H 0.070 0.930 47 H 0.104 0.896 48 H 0.206 0.794 49 H 0.055 0.945 50 H 0.135 0.865 51 H 0.094 0.906 52 H 0.108 0.892 53 H 0.119 0.881 54 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.915 -14.189 15.430 21.164 hybrid contribution 0.039 1.469 -0.782 1.665 sum -2.876 -12.719 14.649 19.612 Atomic orbital electron populations 1.22038 0.91283 1.03556 1.03775 1.20631 0.96801 0.97155 0.83439 0.88591 1.45838 1.67364 1.14961 1.08155 1.21318 0.76566 0.87124 0.85018 1.90609 1.50960 1.17427 1.85034 1.21846 1.04336 0.99553 0.90873 1.20295 0.96089 0.94575 0.94281 1.22057 0.95805 1.00992 1.01957 1.21847 1.01453 1.00308 0.95785 1.22083 0.98552 0.98435 1.02058 1.20722 0.79813 0.84286 0.85325 1.90637 1.39639 1.27952 1.87144 1.45913 1.52566 1.31944 1.05003 1.21503 0.98633 0.96091 0.83347 1.20164 0.97426 0.83550 0.90678 0.91843 1.42548 1.33894 1.01313 1.58285 1.19440 1.06745 0.87333 1.20996 0.90444 1.25296 0.99429 0.99032 1.02264 1.69796 1.29233 1.15745 1.46760 0.85350 0.78250 0.80058 0.77773 1.19064 1.22822 1.23214 1.23065 1.03975 0.98475 0.93232 1.22770 0.92607 1.01501 1.04381 1.22848 0.98629 1.02884 0.96447 0.90730 0.90379 0.91254 0.74796 0.86378 0.87364 0.92286 0.93045 0.92328 0.91924 0.92351 0.91386 0.92597 0.92881 0.92988 0.75183 0.93015 0.89583 0.79440 0.94528 0.86519 0.90551 0.89211 0.88082 0.90305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 9.38 71.98 0.68 -2.52 16 2 C 0.13 3.33 2.98 44.24 0.13 3.46 16 3 H 0.10 2.91 7.58 -2.39 -0.02 2.90 16 4 N -0.71 -15.98 4.95 -446.11 -2.21 -18.19 16 5 C 0.51 11.76 7.21 87.66 0.63 12.39 16 6 O -0.56 -16.79 11.01 -3.03 -0.03 -16.82 16 7 C -0.13 -1.96 4.77 29.85 0.14 -1.81 16 8 C -0.05 -0.88 0.77 -52.18 -0.04 -0.92 16 9 C -0.15 -2.84 8.17 71.98 0.59 -2.25 16 10 C -0.14 -1.63 8.47 71.98 0.61 -1.02 16 11 C -0.15 -3.23 8.18 71.98 0.59 -2.64 16 12 C 0.51 15.09 7.22 87.66 0.63 15.72 16 13 O -0.57 -19.14 15.84 -3.02 -0.05 -19.19 16 14 N -0.70 -20.96 5.28 -463.07 -2.45 -23.40 16 15 C 0.13 3.87 5.22 86.38 0.45 4.32 16 16 C 0.19 6.38 2.86 44.99 0.13 6.51 16 17 H 0.06 2.10 8.08 -2.39 -0.02 2.08 16 18 N -0.72 -30.95 3.08 -322.94 -0.99 -31.95 16 19 C -0.21 -10.35 8.16 84.03 0.69 -9.66 16 20 H 0.08 3.66 6.91 -2.91 -0.02 3.64 16 21 C -0.07 -3.60 5.50 84.86 0.47 -3.13 16 22 N -0.96 -55.77 13.06 21.65 0.28 -55.49 16 23 Si 0.95 44.20 29.55 68.60 2.03 46.23 16 24 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 25 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 26 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 27 C -0.17 -5.16 5.71 -10.79 -0.06 -5.22 16 28 C -0.18 -6.19 9.74 30.62 0.30 -5.89 16 29 C -0.17 -5.55 9.87 30.62 0.30 -5.25 16 30 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.08 1.64 7.56 -2.39 -0.02 1.62 16 32 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 33 H 0.41 8.24 7.79 -92.70 -0.72 7.52 16 34 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 36 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.06 1.45 5.51 -2.39 -0.01 1.44 16 39 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 40 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.06 1.53 5.51 -2.39 -0.01 1.52 16 43 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.41 12.67 7.56 -92.71 -0.70 11.97 16 46 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 48 H 0.37 18.18 7.80 -92.71 -0.72 17.45 16 49 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 50 H 0.12 2.98 8.11 -2.39 -0.02 2.96 16 51 H 0.08 3.41 6.68 -2.39 -0.02 3.39 16 52 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 53 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 54 H 0.08 2.95 6.22 -2.39 -0.01 2.94 16 Total: -1.00 -62.96 424.04 1.57 -61.39 By element: Atomic # 1 Polarization: 56.57 SS G_CDS: -1.24 Total: 55.33 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: 6.23 Total: 2.09 kcal Atomic # 7 Polarization: -123.66 SS G_CDS: -5.37 Total: -129.03 kcal Atomic # 8 Polarization: -35.93 SS G_CDS: -0.08 Total: -36.01 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -62.96 1.57 -61.39 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713122476.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.066 kcal (2) G-P(sol) polarization free energy of solvation -62.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds