Wall clock time and date at job start Sat Apr 11 2020 05:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46901 * 109.47266 * 2 1 4 4 C 1.47012 * 111.00083 * 289.48568 * 3 2 1 5 5 C 1.53095 * 109.25465 * 177.60540 * 4 3 2 6 6 O 1.43015 * 109.26209 * 56.84890 * 5 4 3 7 7 C 1.43012 * 113.73385 * 301.32827 * 6 5 4 8 8 C 1.47010 * 110.99957 * 165.84676 * 3 2 1 9 9 H 1.08999 * 109.51112 * 62.41965 * 8 3 2 10 10 C 1.50704 * 109.51040 * 302.32812 * 8 3 2 11 11 O 1.21288 * 119.99662 * 332.19376 * 10 8 3 12 12 N 1.34775 * 120.00132 * 152.18631 * 10 8 3 13 13 C 1.46924 * 120.62875 * 4.84794 * 12 10 8 14 14 C 1.52763 * 109.00744 * 233.58146 * 13 12 10 15 15 C 1.53036 * 109.38445 * 305.59171 * 14 13 12 16 16 C 1.53038 * 109.54103 * 61.23535 * 15 14 13 17 17 H 1.09006 * 109.49566 * 58.59038 * 16 15 14 18 18 C 1.53003 * 109.50161 * 178.68543 * 16 15 14 19 19 N 1.46497 * 109.46948 * 294.84441 * 18 16 15 20 20 C 1.46500 * 120.00455 * 89.99693 * 19 18 16 21 21 C 1.36938 * 119.99846 * 269.99864 * 19 18 16 22 22 H 1.08001 * 120.00183 * 27.32211 * 21 19 18 23 23 C 1.38819 * 119.99928 * 207.32936 * 21 19 18 24 24 N 1.31611 * 120.00036 * 8.86210 * 23 21 19 25 25 Si 1.86801 * 119.99576 * 188.86322 * 23 21 19 26 26 H 1.48500 * 109.47098 * 89.99912 * 25 23 21 27 27 H 1.48500 * 109.46777 * 209.99575 * 25 23 21 28 28 H 1.48495 * 109.47499 * 329.99554 * 25 23 21 29 29 C 1.46921 * 120.62933 * 185.12559 * 12 10 8 30 30 H 1.09000 * 109.47231 * 59.99822 * 1 2 3 31 31 H 1.08998 * 109.47087 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46540 * 299.99191 * 1 2 3 33 33 H 1.09001 * 109.47008 * 240.00212 * 2 1 3 34 34 H 1.09003 * 109.47510 * 120.00626 * 2 1 3 35 35 H 1.08993 * 109.50714 * 297.53564 * 4 3 2 36 36 H 1.08997 * 109.50823 * 57.67265 * 4 3 2 37 37 H 1.09000 * 109.50931 * 296.91279 * 5 4 3 38 38 H 1.09007 * 109.50693 * 176.78424 * 5 4 3 39 39 H 1.09005 * 109.50955 * 298.73024 * 7 6 5 40 40 H 1.09009 * 109.50323 * 178.60420 * 7 6 5 41 41 H 1.09002 * 109.58916 * 353.41447 * 13 12 10 42 42 H 1.08999 * 109.58789 * 113.84073 * 13 12 10 43 43 H 1.08999 * 109.56320 * 185.55208 * 14 13 12 44 44 H 1.09005 * 109.38824 * 65.51433 * 14 13 12 45 45 H 1.09010 * 109.45930 * 301.21640 * 15 14 13 46 46 H 1.08998 * 109.46106 * 181.26404 * 15 14 13 47 47 H 1.08999 * 109.46825 * 54.83573 * 18 16 15 48 48 H 1.08996 * 109.47125 * 174.84007 * 18 16 15 49 49 H 1.08998 * 109.46896 * 88.96139 * 20 19 18 50 50 H 1.08998 * 109.47099 * 208.96418 * 20 19 18 51 51 H 1.09002 * 109.46974 * 328.95986 * 20 19 18 52 52 H 0.97003 * 120.00031 * 180.02562 * 24 23 21 53 53 H 1.09001 * 109.58410 * 246.15825 * 29 12 10 54 54 H 1.08997 * 109.59252 * 6.58122 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7637 2.0343 -1.2939 5 6 2.2343 3.4898 -1.2302 6 8 3.6186 3.5228 -0.8723 7 6 3.9036 2.8995 0.3829 8 6 3.4500 1.4380 0.3356 9 1 4.0220 0.9032 -0.4226 10 6 3.6755 0.7974 1.6809 11 8 2.7892 0.7979 2.5089 12 7 4.8618 0.2239 1.9639 13 6 5.9792 0.3072 1.0136 14 6 6.4929 -1.1021 0.7248 15 6 6.8395 -1.7966 2.0438 16 6 5.5827 -1.9067 2.9100 17 1 4.8178 -2.4667 2.3717 18 6 5.9231 -2.6303 4.2144 19 7 6.3088 -4.0126 3.9197 20 6 7.7120 -4.3416 3.6573 21 6 5.3575 -4.9972 3.8895 22 1 4.3352 -4.7529 3.6413 23 6 5.7072 -6.3092 4.1781 24 7 6.9056 -6.5826 4.6486 25 14 4.4769 -7.6867 3.8986 26 1 4.6273 -8.2121 2.5178 27 1 4.7265 -8.7786 4.8736 28 1 3.0989 -7.1646 4.0822 29 6 5.0603 -0.5017 3.2260 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3632 0.5137 0.8901 33 1 1.8934 -0.5138 -0.8900 34 1 1.8935 -0.5139 0.8899 35 1 2.3087 1.5097 -2.0785 36 1 0.6958 2.0062 -1.5102 37 1 1.6521 4.0282 -0.4823 38 1 2.0990 3.9590 -2.2047 39 1 3.3700 3.4208 1.1777 40 1 4.9758 2.9418 0.5751 41 1 5.6369 0.7670 0.0864 42 1 6.7823 0.9046 1.4453 43 1 7.3834 -1.0449 0.0988 44 1 5.7199 -1.6700 0.2069 45 1 7.5951 -1.2155 2.5726 46 1 7.2273 -2.7942 1.8379 47 1 6.7501 -2.1198 4.7079 48 1 5.0519 -2.6279 4.8693 49 1 8.2116 -4.5779 4.5968 50 1 7.7649 -5.2026 2.9910 51 1 8.2036 -3.4889 3.1888 52 1 7.1501 -7.4994 4.8499 53 1 5.7870 0.0283 3.8418 54 1 4.1120 -0.5755 3.7582 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713891516.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:37 Heat of formation + Delta-G solvation = -65.125690 kcal Electronic energy + Delta-G solvation = -31954.701720 eV Core-core repulsion = 27926.634062 eV Total energy + Delta-G solvation = -4028.067658 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.90954 -40.21283 -38.86253 -37.30340 -36.96699 -34.61549 -33.08233 -32.85959 -31.91531 -31.75859 -28.20453 -27.92453 -27.24915 -26.74114 -25.21175 -23.89528 -23.15274 -22.68702 -21.94695 -20.95596 -19.96870 -18.69712 -18.42650 -17.75345 -17.53411 -17.08965 -16.61509 -16.20389 -16.12246 -15.92482 -15.75608 -15.61825 -15.32953 -15.21310 -14.94453 -14.67929 -14.53904 -14.45535 -14.06321 -13.85368 -13.67318 -13.30707 -13.19027 -12.95709 -12.92573 -12.81742 -12.77163 -12.56319 -12.42672 -12.37000 -12.16362 -12.05203 -11.93578 -11.85352 -11.67137 -11.61574 -11.48755 -11.20013 -11.01897 -10.66119 -10.56870 -9.66741 -9.46405 -8.68030 -7.85538 -5.36771 1.42340 1.42554 1.43998 1.52124 1.83341 2.47817 2.59058 2.83846 3.28214 3.39705 3.63860 3.68397 3.73810 3.86570 3.89640 3.96854 4.01049 4.05841 4.19795 4.26323 4.31541 4.35072 4.39639 4.46472 4.47562 4.54514 4.57267 4.65149 4.66296 4.70981 4.80172 4.82932 4.86728 4.89929 4.92614 4.95466 4.99150 5.00792 5.19853 5.22088 5.24489 5.34766 5.47475 5.52643 5.55807 5.61967 5.72139 5.73998 5.88947 6.01198 6.34173 6.37962 7.09894 7.16068 7.88007 8.31965 9.17491 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015606 B = 0.002928 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.713626 B = 9560.418751 C =10638.172214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.050 3.950 3 N -0.531 5.531 4 C 0.018 3.982 5 C 0.058 3.942 6 O -0.385 6.385 7 C 0.082 3.918 8 C 0.037 3.963 9 H 0.082 0.918 10 C 0.517 3.483 11 O -0.563 6.563 12 N -0.606 5.606 13 C 0.102 3.898 14 C -0.128 4.128 15 C -0.107 4.107 16 C -0.103 4.103 17 H 0.035 0.965 18 C 0.157 3.843 19 N -0.613 5.613 20 C 0.177 3.823 21 C -0.261 4.261 22 H 0.058 0.942 23 C -0.048 4.048 24 N -0.936 5.936 25 Si 0.964 3.036 26 H -0.284 1.284 27 H -0.292 1.292 28 H -0.273 1.273 29 C 0.127 3.873 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.040 0.960 34 H 0.047 0.953 35 H 0.049 0.951 36 H 0.107 0.893 37 H 0.059 0.941 38 H 0.128 0.872 39 H 0.055 0.945 40 H 0.123 0.877 41 H 0.102 0.898 42 H 0.098 0.902 43 H 0.100 0.900 44 H 0.046 0.954 45 H 0.074 0.926 46 H 0.053 0.947 47 H 0.055 0.945 48 H 0.031 0.969 49 H -0.007 1.007 50 H 0.017 0.983 51 H 0.041 0.959 52 H 0.249 0.751 53 H 0.086 0.914 54 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.451 21.999 -15.402 27.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.078 4.078 3 N -0.258 5.258 4 C -0.110 4.110 5 C -0.018 4.018 6 O -0.303 6.303 7 C 0.004 3.996 8 C -0.075 4.075 9 H 0.100 0.900 10 C 0.305 3.695 11 O -0.441 6.441 12 N -0.339 5.339 13 C -0.019 4.019 14 C -0.166 4.166 15 C -0.144 4.144 16 C -0.125 4.125 17 H 0.054 0.946 18 C 0.030 3.970 19 N -0.336 5.336 20 C 0.032 3.968 21 C -0.392 4.392 22 H 0.076 0.924 23 C -0.244 4.244 24 N -0.583 5.583 25 Si 0.792 3.208 26 H -0.211 1.211 27 H -0.218 1.218 28 H -0.198 1.198 29 C 0.004 3.996 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.125 0.875 37 H 0.078 0.922 38 H 0.146 0.854 39 H 0.074 0.926 40 H 0.141 0.859 41 H 0.120 0.880 42 H 0.116 0.884 43 H 0.118 0.882 44 H 0.064 0.936 45 H 0.093 0.907 46 H 0.072 0.928 47 H 0.073 0.927 48 H 0.050 0.950 49 H 0.011 0.989 50 H 0.036 0.964 51 H 0.059 0.941 52 H 0.058 0.942 53 H 0.104 0.896 54 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.957 22.200 -14.666 27.065 hybrid contribution -0.418 -2.253 -0.015 2.292 sum -5.375 19.946 -14.681 25.343 Atomic orbital electron populations 1.21663 0.93163 1.02045 1.02499 1.22097 0.97804 0.88003 0.99856 1.62008 1.13707 1.18122 1.31935 1.22984 1.03532 0.95871 0.88567 1.22920 0.81407 0.94786 1.02728 1.88005 1.26670 1.78099 1.37568 1.22544 1.02363 0.87874 0.86774 1.22356 0.91422 0.99599 0.94166 0.90017 1.20603 0.81487 0.78309 0.89123 1.90693 1.43820 1.59561 1.50048 1.48271 1.12427 1.52805 1.20356 1.22035 0.88864 0.97869 0.93147 1.21816 1.01867 0.95462 0.97460 1.21539 0.96521 1.00678 0.95699 1.21915 0.97829 0.94209 0.98556 0.94608 1.20800 0.97955 0.84443 0.93810 1.43982 1.04364 1.03426 1.81844 1.20616 0.83680 0.95920 0.96547 1.19379 0.91453 0.88560 1.39808 0.92449 1.25817 0.98601 1.00421 0.99518 1.70189 1.20947 1.18477 1.48670 0.85319 0.79043 0.79209 0.77196 1.21094 1.21804 1.19837 1.21483 1.01322 0.91391 0.85419 0.90806 0.91829 0.93095 0.94169 0.93402 0.93298 0.87504 0.92223 0.85416 0.92620 0.85885 0.88007 0.88361 0.88186 0.93557 0.90737 0.92806 0.92691 0.95011 0.98863 0.96392 0.94077 0.94194 0.89570 0.91781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.93 71.98 0.72 -1.98 16 2 C 0.05 1.17 5.35 86.30 0.46 1.63 16 3 N -0.53 -11.48 4.24 -874.40 -3.71 -15.19 16 4 C 0.02 0.26 5.46 86.31 0.47 0.73 16 5 C 0.06 0.76 7.01 72.01 0.50 1.27 16 6 O -0.39 -6.55 10.83 -148.98 -1.61 -8.17 16 7 C 0.08 1.44 6.18 72.02 0.45 1.88 16 8 C 0.04 0.76 1.53 44.18 0.07 0.83 16 9 H 0.08 1.52 6.31 -2.39 -0.02 1.50 16 10 C 0.52 14.15 5.63 87.66 0.49 14.64 16 11 O -0.56 -20.35 14.98 -3.05 -0.05 -20.40 16 12 N -0.61 -14.86 2.98 -819.74 -2.44 -17.30 16 13 C 0.10 1.73 6.08 86.22 0.52 2.25 16 14 C -0.13 -2.64 6.06 30.53 0.19 -2.45 16 15 C -0.11 -2.96 4.24 30.62 0.13 -2.83 16 16 C -0.10 -3.45 2.54 -10.72 -0.03 -3.48 16 17 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 18 C 0.16 6.33 5.17 86.38 0.45 6.78 16 19 N -0.61 -30.76 2.74 -726.94 -1.99 -32.75 16 20 C 0.18 8.60 8.08 127.77 1.03 9.63 16 21 C -0.26 -14.72 9.62 84.03 0.81 -13.91 16 22 H 0.06 3.24 7.84 -2.91 -0.02 3.22 16 23 C -0.05 -2.76 5.13 84.86 0.44 -2.32 16 24 N -0.94 -56.07 10.80 21.65 0.23 -55.83 16 25 Si 0.96 46.15 29.56 68.60 2.03 48.18 16 26 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 27 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 28 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 29 C 0.13 3.66 5.70 86.36 0.49 4.15 16 30 H 0.07 1.11 6.66 -2.39 -0.02 1.09 16 31 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.04 0.85 8.07 -2.39 -0.02 0.84 16 34 H 0.05 1.47 5.97 -2.39 -0.01 1.45 16 35 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.11 1.26 6.56 -2.39 -0.02 1.25 16 37 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.13 0.98 8.14 -2.38 -0.02 0.96 16 39 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 40 H 0.12 1.60 7.75 -2.38 -0.02 1.58 16 41 H 0.10 1.32 5.19 -2.39 -0.01 1.30 16 42 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 45 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 46 H 0.05 1.81 5.76 -2.39 -0.01 1.80 16 47 H 0.05 2.01 8.07 -2.39 -0.02 1.99 16 48 H 0.03 1.36 8.04 -2.39 -0.02 1.34 16 49 H -0.01 -0.37 7.62 -2.39 -0.02 -0.39 16 50 H 0.02 0.94 7.11 -2.39 -0.02 0.92 16 51 H 0.04 1.64 5.91 -2.39 -0.01 1.62 16 52 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 53 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 54 H 0.06 2.18 7.04 -2.39 -0.02 2.17 16 Total: -1.00 -72.55 401.09 0.52 -72.03 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 0.86 Total: 12.61 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: 7.19 Total: 16.82 kcal Atomic # 7 Polarization: -113.16 SS G_CDS: -7.91 Total: -121.07 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -1.66 Total: -28.56 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -72.55 0.52 -72.03 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713891516.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.904 kcal (2) G-P(sol) polarization free energy of solvation -72.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds