Wall clock time and date at job start Sat Apr 11 2020 05:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46901 * 109.46868 * 2 1 4 4 C 1.47003 * 111.00529 * 46.36486 * 3 2 1 5 5 C 1.53100 * 109.26273 * 182.39099 * 4 3 2 6 6 O 1.43014 * 109.25675 * 303.15046 * 5 4 3 7 7 C 1.43023 * 113.73839 * 58.66446 * 6 5 4 8 8 C 1.47024 * 110.99591 * 169.99798 * 3 2 1 9 9 H 1.08992 * 109.54299 * 297.56440 * 8 3 2 10 10 C 1.50704 * 109.50330 * 57.66903 * 8 3 2 11 11 O 1.21277 * 120.00388 * 25.13311 * 10 8 3 12 12 N 1.34775 * 119.99892 * 205.12241 * 10 8 3 13 13 C 1.46933 * 120.62817 * 354.51425 * 12 10 8 14 14 C 1.53192 * 108.77110 * 126.36580 * 13 12 10 15 15 C 1.53037 * 109.34268 * 54.62336 * 14 13 12 16 16 C 1.53047 * 109.53646 * 298.67711 * 15 14 13 17 17 H 1.09004 * 109.49789 * 301.35345 * 16 15 14 18 18 C 1.52995 * 109.49935 * 181.28169 * 16 15 14 19 19 N 1.46509 * 109.46673 * 65.06722 * 18 16 15 20 20 C 1.46490 * 119.99942 * 269.99535 * 19 18 16 21 21 C 1.36941 * 119.99729 * 90.00328 * 19 18 16 22 22 H 1.07996 * 120.00158 * 24.84584 * 21 19 18 23 23 C 1.38814 * 119.99647 * 204.84808 * 21 19 18 24 24 N 1.31619 * 120.00010 * 5.82763 * 23 21 19 25 25 Si 1.86795 * 120.00040 * 185.83146 * 23 21 19 26 26 H 1.48500 * 109.47378 * 59.99648 * 25 23 21 27 27 H 1.48500 * 109.47435 * 180.02562 * 25 23 21 28 28 H 1.48508 * 109.46852 * 299.99709 * 25 23 21 29 29 C 1.46922 * 120.63201 * 174.48736 * 12 10 8 30 30 H 1.08998 * 109.47182 * 60.00279 * 1 2 3 31 31 H 1.08994 * 109.47320 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47348 * 300.00649 * 1 2 3 33 33 H 1.09000 * 109.46856 * 239.99244 * 2 1 3 34 34 H 1.09001 * 109.46560 * 119.99337 * 2 1 3 35 35 H 1.09004 * 109.50903 * 62.45426 * 4 3 2 36 36 H 1.09006 * 109.50691 * 302.32698 * 4 3 2 37 37 H 1.08992 * 109.50804 * 183.21218 * 5 4 3 38 38 H 1.08998 * 109.53872 * 63.10437 * 5 4 3 39 39 H 1.09002 * 109.50547 * 181.39043 * 7 6 5 40 40 H 1.09002 * 109.50225 * 61.26480 * 7 6 5 41 41 H 1.08994 * 109.58561 * 246.15093 * 13 12 10 42 42 H 1.08993 * 109.58836 * 6.58059 * 13 12 10 43 43 H 1.09009 * 109.49538 * 174.58817 * 14 13 12 44 44 H 1.09000 * 109.50153 * 294.67996 * 14 13 12 45 45 H 1.09000 * 109.48812 * 178.64506 * 15 14 13 46 46 H 1.08993 * 109.43542 * 58.67879 * 15 14 13 47 47 H 1.08991 * 109.47457 * 305.07057 * 18 16 15 48 48 H 1.08996 * 109.47078 * 185.06736 * 18 16 15 49 49 H 1.09007 * 109.47290 * 95.30665 * 20 19 18 50 50 H 1.09001 * 109.47678 * 215.30389 * 20 19 18 51 51 H 1.08999 * 109.47454 * 335.30556 * 20 19 18 52 52 H 0.97001 * 120.00249 * 179.97438 * 24 23 21 53 53 H 1.09003 * 109.58669 * 113.84816 * 29 12 10 54 54 H 1.08996 * 109.70349 * 353.49351 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.3024 2.1975 0.9932 5 6 1.8009 3.6431 0.9183 6 8 3.2164 3.6650 1.1212 7 6 3.9465 2.8844 0.1709 8 6 3.4697 1.4312 0.2384 9 1 3.6904 1.0210 1.2238 10 6 4.1788 0.6194 -0.8148 11 8 3.6588 0.4419 -1.8960 12 7 5.3911 0.0907 -0.5553 13 6 6.0869 0.3953 0.7024 14 6 6.4683 -0.9215 1.3862 15 6 7.2771 -1.7822 0.4130 16 6 6.4237 -2.1048 -0.8158 17 1 5.5196 -2.6277 -0.5037 18 6 7.2219 -2.9918 -1.7733 19 7 7.4856 -4.2845 -1.1363 20 6 8.6997 -4.4741 -0.3388 21 6 6.5970 -5.3157 -1.2865 22 1 5.9449 -5.3456 -2.1469 23 6 6.5346 -6.3224 -0.3329 24 7 7.2453 -6.2284 0.7709 25 14 5.4419 -7.8108 -0.6162 26 1 5.8727 -8.5131 -1.8517 27 1 5.5519 -8.7334 0.5422 28 1 4.0319 -7.3687 -0.7641 29 6 6.0417 -0.8015 -1.5245 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8933 -0.5140 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.4878 1.7998 1.9911 36 1 0.2332 2.1697 0.7826 37 1 1.3131 4.2368 1.6912 38 1 1.5672 4.0589 -0.0618 39 1 5.0104 2.9296 0.4034 40 1 3.7752 3.2775 -0.8312 41 1 6.9876 0.9717 0.4914 42 1 5.4283 0.9684 1.3549 43 1 7.0688 -0.7112 2.2713 44 1 5.5638 -1.4552 1.6780 45 1 7.5703 -2.7096 0.9051 46 1 8.1691 -1.2381 0.1028 47 1 8.1674 -2.5065 -2.0153 48 1 6.6490 -3.1473 -2.6874 49 1 8.4740 -4.3007 0.7134 50 1 9.0646 -5.4929 -0.4690 51 1 9.4638 -3.7696 -0.6673 52 1 7.2013 -6.9317 1.4375 53 1 6.9388 -0.3226 -1.9171 54 1 5.3553 -1.0182 -2.3429 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713891517.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:40 Heat of formation + Delta-G solvation = -61.794281 kcal Electronic energy + Delta-G solvation = -32127.840350 eV Core-core repulsion = 28099.917152 eV Total energy + Delta-G solvation = -4027.923198 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.90671 -40.22369 -38.84006 -37.34402 -37.01857 -34.58896 -33.11326 -32.87994 -31.84428 -31.66564 -28.18011 -27.97900 -27.24056 -26.75337 -25.21826 -23.87486 -23.27382 -22.63816 -21.82741 -20.89680 -20.00741 -18.72312 -18.46767 -17.75780 -17.46994 -16.97888 -16.61673 -16.35499 -16.07002 -16.00910 -15.83013 -15.60705 -15.36411 -15.22355 -14.98618 -14.61561 -14.51355 -14.43822 -14.04090 -13.84903 -13.72472 -13.31180 -13.16876 -12.95301 -12.87274 -12.74338 -12.67971 -12.60519 -12.43248 -12.25637 -12.13671 -12.10373 -11.97896 -11.90763 -11.64163 -11.59272 -11.49570 -11.18547 -11.02262 -10.64787 -10.56807 -9.66636 -9.46442 -8.70737 -7.82697 -5.31355 1.42123 1.42824 1.44140 1.50186 1.84333 2.48760 2.58575 2.83482 3.30714 3.39232 3.64122 3.70641 3.74733 3.87324 3.90162 3.97424 4.01214 4.04828 4.15361 4.26451 4.29282 4.33761 4.39957 4.43788 4.47107 4.53636 4.55079 4.64609 4.67178 4.71688 4.79396 4.85582 4.87664 4.90046 4.91205 4.92621 4.98045 5.02994 5.16360 5.21569 5.25304 5.38368 5.45252 5.54817 5.58387 5.65362 5.71808 5.86103 5.88235 6.00768 6.34900 6.37572 7.09242 7.18060 7.90278 8.32551 9.19238 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014349 B = 0.003133 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.853004 B = 8934.414870 C = 9967.388800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.047 3.953 3 N -0.528 5.528 4 C 0.013 3.987 5 C 0.058 3.942 6 O -0.386 6.386 7 C 0.083 3.917 8 C 0.036 3.964 9 H 0.078 0.922 10 C 0.517 3.483 11 O -0.563 6.563 12 N -0.606 5.606 13 C 0.105 3.895 14 C -0.127 4.127 15 C -0.105 4.105 16 C -0.104 4.104 17 H 0.025 0.975 18 C 0.156 3.844 19 N -0.614 5.614 20 C 0.182 3.818 21 C -0.262 4.262 22 H 0.061 0.939 23 C -0.047 4.047 24 N -0.933 5.933 25 Si 0.961 3.039 26 H -0.278 1.278 27 H -0.291 1.291 28 H -0.283 1.283 29 C 0.127 3.873 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.055 0.945 34 H 0.024 0.976 35 H 0.046 0.954 36 H 0.113 0.887 37 H 0.128 0.872 38 H 0.061 0.939 39 H 0.124 0.876 40 H 0.058 0.942 41 H 0.102 0.898 42 H 0.100 0.900 43 H 0.095 0.905 44 H 0.037 0.963 45 H 0.048 0.952 46 H 0.075 0.925 47 H 0.065 0.935 48 H 0.036 0.964 49 H 0.014 0.986 50 H 0.010 0.990 51 H 0.028 0.972 52 H 0.247 0.753 53 H 0.090 0.910 54 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.162 22.298 3.787 23.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.081 4.081 3 N -0.255 5.255 4 C -0.114 4.114 5 C -0.019 4.019 6 O -0.304 6.304 7 C 0.005 3.995 8 C -0.076 4.076 9 H 0.095 0.905 10 C 0.304 3.696 11 O -0.441 6.441 12 N -0.339 5.339 13 C -0.016 4.016 14 C -0.166 4.166 15 C -0.142 4.142 16 C -0.126 4.126 17 H 0.044 0.956 18 C 0.030 3.970 19 N -0.337 5.337 20 C 0.037 3.963 21 C -0.393 4.393 22 H 0.079 0.921 23 C -0.242 4.242 24 N -0.580 5.580 25 Si 0.790 3.210 26 H -0.204 1.204 27 H -0.217 1.217 28 H -0.209 1.209 29 C 0.004 3.996 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.042 0.958 35 H 0.064 0.936 36 H 0.131 0.869 37 H 0.146 0.854 38 H 0.080 0.920 39 H 0.141 0.859 40 H 0.077 0.923 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.114 0.886 44 H 0.056 0.944 45 H 0.067 0.933 46 H 0.094 0.906 47 H 0.083 0.917 48 H 0.055 0.945 49 H 0.032 0.968 50 H 0.029 0.971 51 H 0.046 0.954 52 H 0.056 0.944 53 H 0.108 0.892 54 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.404 22.389 3.024 23.774 hybrid contribution -0.584 -2.308 0.505 2.434 sum -7.988 20.081 3.529 21.897 Atomic orbital electron populations 1.21844 0.92513 1.02706 1.03079 1.22137 0.97809 0.88396 0.99746 1.62055 1.01494 1.11993 1.49952 1.23067 1.00782 0.94271 0.93311 1.22942 0.80430 0.95080 1.03413 1.88004 1.19378 1.69258 1.53753 1.22560 0.97384 0.85772 0.93782 1.22369 0.90068 0.98585 0.96614 0.90489 1.20595 0.80835 0.79774 0.88354 1.90666 1.66250 1.60942 1.26202 1.48275 1.18166 1.46875 1.20570 1.22094 0.98593 0.97086 0.83837 1.21859 0.99867 0.95784 0.99048 1.21473 0.97965 0.99486 0.95313 1.21945 0.98440 0.94535 0.97687 0.95624 1.20933 0.97514 0.85030 0.93562 1.44062 1.21612 1.08294 1.59749 1.20609 0.85519 0.96443 0.93728 1.19418 1.15220 1.01522 1.03132 0.92140 1.25733 1.00676 1.02400 0.95379 1.70181 1.44553 1.34183 1.09065 0.85443 0.79001 0.79742 0.76855 1.20416 1.21711 1.20891 1.21535 0.97617 0.89293 0.91112 0.91718 0.91728 0.90464 0.92684 0.95761 0.93604 0.86933 0.85391 0.92033 0.85856 0.92341 0.87993 0.88190 0.88646 0.94445 0.93347 0.90641 0.91663 0.94524 0.96813 0.97132 0.95384 0.94389 0.89210 0.91662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.18 71.98 0.66 -2.10 16 2 C 0.05 1.20 5.36 86.30 0.46 1.67 16 3 N -0.53 -12.37 4.42 -874.38 -3.86 -16.23 16 4 C 0.01 0.21 4.94 86.32 0.43 0.63 16 5 C 0.06 0.82 7.01 72.02 0.50 1.33 16 6 O -0.39 -7.02 10.83 -148.98 -1.61 -8.64 16 7 C 0.08 1.55 6.11 72.01 0.44 1.99 16 8 C 0.04 0.82 1.48 44.18 0.07 0.89 16 9 H 0.08 1.67 6.50 -2.39 -0.02 1.66 16 10 C 0.52 15.12 6.07 87.66 0.53 15.65 16 11 O -0.56 -21.03 14.59 -3.02 -0.04 -21.07 16 12 N -0.61 -16.17 2.97 -818.91 -2.43 -18.60 16 13 C 0.11 2.07 5.89 86.36 0.51 2.58 16 14 C -0.13 -3.22 6.08 30.67 0.19 -3.03 16 15 C -0.10 -3.34 4.78 30.62 0.15 -3.20 16 16 C -0.10 -3.76 2.54 -10.71 -0.03 -3.79 16 17 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 18 C 0.16 6.23 5.18 86.38 0.45 6.68 16 19 N -0.61 -30.61 2.75 -726.96 -2.00 -32.61 16 20 C 0.18 8.79 7.83 127.77 1.00 9.79 16 21 C -0.26 -14.70 9.67 84.03 0.81 -13.89 16 22 H 0.06 3.38 7.83 -2.91 -0.02 3.35 16 23 C -0.05 -2.64 5.24 84.86 0.44 -2.20 16 24 N -0.93 -54.87 10.45 21.65 0.23 -54.64 16 25 Si 0.96 46.10 29.56 68.60 2.03 48.13 16 26 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 27 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 28 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 29 C 0.13 3.84 5.70 86.37 0.49 4.33 16 30 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.08 1.13 6.28 -2.39 -0.01 1.11 16 33 H 0.05 1.82 6.44 -2.39 -0.02 1.81 16 34 H 0.02 0.64 8.08 -2.39 -0.02 0.62 16 35 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.11 1.45 6.05 -2.38 -0.01 1.44 16 37 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.12 1.75 7.34 -2.39 -0.02 1.73 16 40 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.10 1.58 5.05 -2.39 -0.01 1.57 16 43 H 0.10 1.96 8.14 -2.38 -0.02 1.94 16 44 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.05 1.97 5.46 -2.39 -0.01 1.95 16 46 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 47 H 0.07 2.24 7.86 -2.39 -0.02 2.22 16 48 H 0.04 1.49 8.04 -2.39 -0.02 1.47 16 49 H 0.01 0.72 5.84 -2.38 -0.01 0.70 16 50 H 0.01 0.54 7.28 -2.39 -0.02 0.52 16 51 H 0.03 1.14 7.83 -2.39 -0.02 1.12 16 52 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 53 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 54 H 0.06 2.27 7.05 -2.39 -0.02 2.26 16 Total: -1.00 -71.57 398.88 0.27 -71.29 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 0.87 Total: 15.05 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: 7.10 Total: 17.32 kcal Atomic # 7 Polarization: -114.02 SS G_CDS: -8.07 Total: -122.09 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -1.66 Total: -29.71 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -71.57 0.27 -71.29 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713891517.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.499 kcal (2) G-P(sol) polarization free energy of solvation -71.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds