Wall clock time and date at job start Sat Apr 11 2020 05:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.46908 * 2 1 4 4 C 1.52997 * 109.46851 * 120.00069 * 2 1 3 5 5 H 1.08995 * 109.47277 * 60.00147 * 4 2 1 6 6 C 1.53008 * 109.46851 * 180.02562 * 4 2 1 7 7 N 1.46494 * 109.47226 * 174.99842 * 6 4 2 8 8 C 1.34773 * 120.00120 * 180.02562 * 7 6 4 9 9 O 1.21283 * 119.99810 * 359.97438 * 8 7 6 10 10 C 1.50705 * 120.00202 * 180.02562 * 8 7 6 11 11 H 1.08992 * 109.47086 * 59.99193 * 10 8 7 12 12 C 1.53000 * 109.46744 * 299.99745 * 10 8 7 13 13 N 1.46499 * 109.47079 * 180.02562 * 10 8 7 14 14 C 1.34775 * 119.99299 * 204.99843 * 13 10 8 15 15 O 1.21276 * 120.00699 * 359.97438 * 14 13 10 16 16 C 1.50709 * 119.99599 * 179.97438 * 14 13 10 17 17 C 1.55238 * 110.58096 * 294.87565 * 16 14 13 18 18 C 1.54894 * 102.58338 * 203.33573 * 17 16 14 19 19 C 1.54266 * 104.31305 * 37.93170 * 18 17 16 20 20 C 1.53869 * 106.60031 * 336.32486 * 19 18 17 21 21 N 1.46498 * 109.47436 * 299.99687 * 4 2 1 22 22 C 1.36932 * 119.99795 * 85.00123 * 21 4 2 23 23 H 1.07998 * 120.00243 * 0.02562 * 22 21 4 24 24 C 1.38811 * 120.00140 * 180.02562 * 22 21 4 25 25 N 1.31624 * 119.99983 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00288 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47101 * 59.99506 * 26 24 22 28 28 H 1.48501 * 109.47447 * 180.02562 * 26 24 22 29 29 H 1.48502 * 109.47191 * 299.99916 * 26 24 22 30 30 H 1.08998 * 109.46710 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46763 * 299.99877 * 1 2 3 32 32 H 1.08994 * 109.46851 * 60.00188 * 1 2 3 33 33 H 1.08998 * 109.46763 * 240.00123 * 2 1 3 34 34 H 1.09000 * 109.46944 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.47216 * 299.99726 * 3 2 1 36 36 H 1.08997 * 109.47516 * 59.99949 * 3 2 1 37 37 H 1.09006 * 109.46955 * 55.00117 * 6 4 2 38 38 H 1.09004 * 109.47118 * 295.00015 * 6 4 2 39 39 H 0.97008 * 119.99824 * 0.02562 * 7 6 4 40 40 H 1.08993 * 109.47204 * 180.02562 * 12 10 8 41 41 H 1.09006 * 109.47290 * 299.99957 * 12 10 8 42 42 H 1.09000 * 109.47261 * 59.99990 * 12 10 8 43 43 H 0.96998 * 120.00025 * 24.99460 * 13 10 8 44 44 H 1.09006 * 110.43428 * 57.45967 * 16 14 13 45 45 H 1.08996 * 110.89448 * 85.05138 * 17 16 14 46 46 H 1.08993 * 110.76342 * 321.56803 * 17 16 14 47 47 H 1.09002 * 110.48891 * 279.18596 * 18 17 16 48 48 H 1.08998 * 110.48494 * 156.67683 * 18 17 16 49 49 H 1.09001 * 110.03084 * 95.60669 * 19 18 17 50 50 H 1.08996 * 110.03108 * 216.98559 * 19 18 17 51 51 H 1.08999 * 110.04012 * 119.28327 * 20 19 18 52 52 H 1.09006 * 110.02998 * 240.67078 * 20 19 18 53 53 H 0.97003 * 119.99891 * 265.00949 * 21 4 2 54 54 H 0.96996 * 120.00101 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -1.7489 1.2492 6 6 3.5701 -0.7207 1.2496 7 7 4.0584 -1.3044 2.5013 8 6 5.3834 -1.4075 2.7250 9 8 6.1715 -1.0175 1.8897 10 6 5.8858 -2.0085 4.0125 11 1 5.5231 -3.0325 4.1013 12 6 5.3746 -1.1823 5.1945 13 7 7.3507 -2.0068 4.0133 14 6 8.0251 -2.9007 4.7633 15 8 7.4194 -3.7063 5.4377 16 6 9.5322 -2.8993 4.7637 17 6 10.0787 -3.2771 3.3607 18 6 11.4972 -3.8092 3.6831 19 6 11.3222 -4.5849 5.0051 20 6 10.0729 -4.0064 5.6921 21 7 1.5517 -0.0307 2.4454 22 6 0.3102 -0.3211 2.9448 23 1 -0.3089 -1.0595 2.4570 24 6 -0.1527 0.3336 4.0779 25 7 0.6019 1.2332 4.6726 26 14 -1.8461 -0.0630 4.7595 27 1 -1.9080 -1.5009 5.1254 28 1 -2.1014 0.7665 5.9645 29 1 -2.8753 0.2305 3.7300 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 3.9331 0.3033 1.1602 38 1 3.9338 -1.3099 0.4077 39 1 3.4280 -1.6167 3.1692 40 1 5.7382 -1.6167 6.1256 41 1 5.7372 -0.1582 5.1058 42 1 4.2846 -1.1832 5.1940 43 1 7.8353 -1.3622 3.4742 44 1 9.9118 -1.9248 5.0709 45 1 10.1325 -2.4004 2.7154 46 1 9.4680 -4.0566 2.9052 47 1 12.1941 -2.9816 3.8158 48 1 11.8435 -4.4754 2.8929 49 1 11.1778 -5.6455 4.7993 50 1 12.1973 -4.4437 5.6394 51 1 9.3221 -4.7862 5.8198 52 1 10.3411 -3.5844 6.6607 53 1 2.1079 0.6324 2.8836 54 1 0.2786 1.6904 5.4646 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715493160.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:45 Heat of formation + Delta-G solvation = -110.358509 kcal Electronic energy + Delta-G solvation = -30570.855150 eV Core-core repulsion = 26540.826050 eV Total energy + Delta-G solvation = -4030.029101 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.59482 -40.56901 -38.89711 -38.07203 -36.06699 -35.38938 -34.71602 -32.43764 -31.79197 -29.92792 -29.55304 -29.22418 -27.73015 -26.04279 -25.24798 -23.72024 -22.69152 -21.41774 -21.27795 -20.78243 -20.15561 -19.28291 -18.83127 -17.84400 -17.36733 -16.90786 -16.64405 -16.62080 -16.11254 -15.94820 -15.73847 -15.44531 -15.14610 -14.83575 -14.78482 -14.47880 -14.37707 -14.27704 -13.80330 -13.71266 -13.39531 -13.29163 -12.94888 -12.88152 -12.78757 -12.68416 -12.63168 -12.45337 -12.18836 -12.12974 -12.05645 -11.97589 -11.95073 -11.87601 -11.69321 -11.36380 -11.28842 -11.17500 -10.99771 -10.85565 -10.76523 -10.25604 -10.01277 -8.90286 -7.83832 -5.08884 1.47579 1.51464 1.52884 1.56373 1.57175 1.83200 2.43599 2.62329 3.47465 3.50334 3.57931 3.65183 3.81846 3.93197 3.96235 3.99459 4.05348 4.24494 4.29808 4.37317 4.45682 4.47968 4.52821 4.58815 4.61277 4.62262 4.70261 4.74424 4.78849 4.80537 4.97047 4.97286 5.00269 5.11252 5.12442 5.14218 5.20776 5.24603 5.26623 5.29859 5.30490 5.34527 5.41392 5.49481 5.52338 5.61570 5.66631 5.84688 6.36526 6.46024 6.49636 7.10065 7.16910 7.45688 8.17515 8.42736 9.38381 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015322 B = 0.002440 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.945298 B =11473.399544 C =12813.794544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.104 4.104 3 C -0.135 4.135 4 C 0.168 3.832 5 H 0.056 0.944 6 C 0.120 3.880 7 N -0.703 5.703 8 C 0.513 3.487 9 O -0.571 6.571 10 C 0.131 3.869 11 H 0.108 0.892 12 C -0.150 4.150 13 N -0.704 5.704 14 C 0.520 3.480 15 O -0.579 6.579 16 C -0.109 4.109 17 C -0.113 4.113 18 C -0.119 4.119 19 C -0.122 4.122 20 C -0.114 4.114 21 N -0.719 5.719 22 C -0.211 4.211 23 H 0.076 0.924 24 C -0.068 4.068 25 N -0.963 5.963 26 Si 0.952 3.048 27 H -0.282 1.282 28 H -0.306 1.306 29 H -0.285 1.285 30 H 0.044 0.956 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.079 0.921 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.035 0.965 37 H 0.062 0.938 38 H 0.079 0.921 39 H 0.411 0.589 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.073 0.927 43 H 0.415 0.585 44 H 0.123 0.877 45 H 0.087 0.913 46 H 0.057 0.943 47 H 0.083 0.917 48 H 0.075 0.925 49 H 0.061 0.939 50 H 0.078 0.922 51 H 0.057 0.943 52 H 0.072 0.928 53 H 0.374 0.626 54 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.274 -7.512 -4.644 21.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.126 4.126 3 C -0.192 4.192 4 C 0.059 3.941 5 H 0.073 0.927 6 C -0.004 4.004 7 N -0.354 5.354 8 C 0.298 3.702 9 O -0.451 6.451 10 C 0.022 3.978 11 H 0.126 0.874 12 C -0.208 4.208 13 N -0.357 5.357 14 C 0.308 3.692 15 O -0.458 6.458 16 C -0.130 4.130 17 C -0.151 4.151 18 C -0.156 4.156 19 C -0.160 4.160 20 C -0.152 4.152 21 N -0.359 5.359 22 C -0.343 4.343 23 H 0.094 0.906 24 C -0.261 4.261 25 N -0.614 5.614 26 Si 0.783 3.217 27 H -0.209 1.209 28 H -0.233 1.233 29 H -0.212 1.212 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.054 0.946 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.248 0.752 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.253 0.747 44 H 0.141 0.859 45 H 0.105 0.895 46 H 0.075 0.925 47 H 0.101 0.899 48 H 0.094 0.906 49 H 0.080 0.920 50 H 0.097 0.903 51 H 0.076 0.924 52 H 0.091 0.909 53 H 0.207 0.793 54 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 19.196 -7.894 -4.750 21.293 hybrid contribution -1.464 0.503 0.940 1.811 sum 17.733 -7.391 -3.810 19.585 Atomic orbital electron populations 1.21755 0.95665 1.00822 1.01159 1.21582 0.96152 0.96666 0.98187 1.21713 1.00202 0.96520 1.00788 1.20698 0.90238 0.95644 0.87556 0.92651 1.21700 0.94493 0.98443 0.85796 1.45925 1.06478 1.61550 1.21418 1.20651 0.82786 0.78583 0.88131 1.90638 1.55834 1.51091 1.47581 1.20643 0.82574 1.01761 0.92793 0.87421 1.22021 1.02092 0.99845 0.96865 1.45767 1.05286 1.36710 1.47928 1.21183 0.91358 0.78908 0.77704 1.90672 1.71261 1.40331 1.43558 1.22313 0.88470 1.02973 0.99285 1.22564 0.97002 1.01615 0.93878 1.22356 0.95773 1.00331 0.97141 1.22145 0.97264 0.99727 0.96860 1.22075 0.97653 0.97174 0.98298 1.42456 1.17011 1.47335 1.29129 1.19383 0.93352 1.16143 1.05391 0.90570 1.25242 1.00763 1.00283 0.99785 1.69769 1.38114 1.30802 1.22763 0.85537 0.81880 0.77061 0.77196 1.20864 1.23274 1.21181 0.93654 0.93041 0.93193 0.90314 0.92710 0.92678 0.94594 0.91948 0.90320 0.75211 0.91260 0.91765 0.90851 0.74705 0.85928 0.89459 0.92463 0.89863 0.90648 0.92004 0.90279 0.92384 0.90876 0.79322 0.94572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.50 8.26 71.98 0.59 -3.90 16 2 C -0.10 -3.17 2.80 -10.79 -0.03 -3.20 16 3 C -0.13 -4.18 8.69 71.98 0.63 -3.55 16 4 C 0.17 5.57 2.35 44.99 0.11 5.68 16 5 H 0.06 1.86 8.08 -2.39 -0.02 1.84 16 6 C 0.12 3.62 5.01 86.38 0.43 4.05 16 7 N -0.70 -21.20 5.28 -463.04 -2.44 -23.64 16 8 C 0.51 15.28 7.22 87.66 0.63 15.91 16 9 O -0.57 -19.07 15.84 -3.04 -0.05 -19.12 16 10 C 0.13 3.51 2.99 44.25 0.13 3.64 16 11 H 0.11 3.00 7.58 -2.39 -0.02 2.98 16 12 C -0.15 -4.04 9.38 71.98 0.68 -3.36 16 13 N -0.70 -16.73 4.94 -446.10 -2.20 -18.93 16 14 C 0.52 12.75 7.10 87.66 0.62 13.37 16 15 O -0.58 -18.55 15.09 -3.02 -0.05 -18.59 16 16 C -0.11 -1.86 3.25 -10.34 -0.03 -1.89 16 17 C -0.11 -1.62 6.34 32.01 0.20 -1.42 16 18 C -0.12 -1.30 6.82 31.67 0.22 -1.09 16 19 C -0.12 -1.55 6.80 31.32 0.21 -1.34 16 20 C -0.11 -1.97 6.18 31.32 0.19 -1.78 16 21 N -0.72 -30.35 3.67 -322.95 -1.19 -31.54 16 22 C -0.21 -10.14 7.57 84.03 0.64 -9.50 16 23 H 0.08 3.57 7.40 -2.91 -0.02 3.55 16 24 C -0.07 -3.58 5.50 84.86 0.47 -3.12 16 25 N -0.96 -54.55 13.06 21.65 0.28 -54.27 16 26 Si 0.95 43.85 29.55 68.60 2.03 45.88 16 27 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 28 H -0.31 -14.66 7.11 99.48 0.71 -13.96 16 29 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 30 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.05 2.08 6.01 -2.39 -0.01 2.07 16 32 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.05 1.57 6.32 -2.39 -0.02 1.55 16 35 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 36 H 0.03 1.35 7.60 -2.39 -0.02 1.33 16 37 H 0.06 2.02 6.17 -2.38 -0.01 2.00 16 38 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 39 H 0.41 12.86 7.56 -92.70 -0.70 12.16 16 40 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 42 H 0.07 2.12 7.56 -2.39 -0.02 2.10 16 43 H 0.42 8.92 7.79 -92.71 -0.72 8.19 16 44 H 0.12 1.57 8.14 -2.38 -0.02 1.55 16 45 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.06 1.01 8.06 -2.39 -0.02 0.99 16 47 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 49 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 51 H 0.06 1.32 6.85 -2.39 -0.02 1.31 16 52 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 53 H 0.37 17.66 7.80 -92.71 -0.72 16.94 16 54 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 Total: -1.00 -61.72 422.10 0.82 -60.90 By element: Atomic # 1 Polarization: 52.06 SS G_CDS: -1.24 Total: 50.82 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: 5.69 Total: 8.50 kcal Atomic # 7 Polarization: -122.83 SS G_CDS: -5.55 Total: -128.38 kcal Atomic # 8 Polarization: -37.62 SS G_CDS: -0.09 Total: -37.71 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -61.72 0.82 -60.90 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715493160.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.459 kcal (2) G-P(sol) polarization free energy of solvation -61.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds