Wall clock time and date at job start Sat Apr 11 2020 05:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47356 * 2 1 4 4 C 1.53006 * 109.46971 * 119.99852 * 2 1 3 5 5 H 1.09004 * 109.46901 * 185.00068 * 4 2 1 6 6 C 1.52993 * 109.47133 * 65.00129 * 4 2 1 7 7 N 1.46493 * 109.47346 * 185.00123 * 6 4 2 8 8 C 1.34781 * 120.00398 * 180.02562 * 7 6 4 9 9 O 1.21273 * 119.99559 * 359.97438 * 8 7 6 10 10 C 1.50703 * 120.00160 * 179.97438 * 8 7 6 11 11 H 1.09008 * 109.46877 * 59.99887 * 10 8 7 12 12 C 1.52998 * 109.47088 * 300.00309 * 10 8 7 13 13 N 1.46492 * 109.47199 * 179.97438 * 10 8 7 14 14 C 1.34779 * 120.00276 * 205.00095 * 13 10 8 15 15 O 1.21282 * 119.99778 * 0.02562 * 14 13 10 16 16 C 1.50697 * 120.00010 * 179.97438 * 14 13 10 17 17 C 1.54261 * 110.03582 * 297.90868 * 16 14 13 18 18 C 1.54962 * 104.16139 * 217.14096 * 17 16 14 19 19 C 1.54888 * 102.78062 * 37.88334 * 18 17 16 20 20 C 1.53876 * 110.03101 * 180.68680 * 16 14 13 21 21 N 1.46493 * 109.46887 * 304.99751 * 4 2 1 22 22 C 1.36936 * 120.00314 * 274.99849 * 21 4 2 23 23 H 1.08001 * 120.00159 * 0.02562 * 22 21 4 24 24 C 1.38811 * 119.99842 * 180.02562 * 22 21 4 25 25 N 1.31624 * 119.99540 * 179.72505 * 24 22 21 26 26 Si 1.86800 * 120.00451 * 0.02562 * 24 22 21 27 27 H 1.48501 * 109.46758 * 269.72270 * 26 24 22 28 28 H 1.48499 * 109.47026 * 29.72118 * 26 24 22 29 29 H 1.48496 * 109.47474 * 149.72153 * 26 24 22 30 30 H 1.09000 * 109.47421 * 300.00507 * 1 2 3 31 31 H 1.09007 * 109.47483 * 60.00102 * 1 2 3 32 32 H 1.09002 * 109.47675 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47421 * 239.99493 * 2 1 3 34 34 H 1.09002 * 109.46608 * 299.99433 * 3 2 1 35 35 H 1.09000 * 109.47269 * 59.99400 * 3 2 1 36 36 H 1.08991 * 109.47041 * 180.02562 * 3 2 1 37 37 H 1.09009 * 109.47018 * 304.99771 * 6 4 2 38 38 H 1.09002 * 109.47579 * 64.99441 * 6 4 2 39 39 H 0.96998 * 119.99959 * 359.97438 * 7 6 4 40 40 H 1.09008 * 109.46917 * 299.99554 * 12 10 8 41 41 H 1.08997 * 109.47448 * 59.99580 * 12 10 8 42 42 H 1.08996 * 109.47338 * 180.02562 * 12 10 8 43 43 H 0.97002 * 119.99731 * 24.99923 * 13 10 8 44 44 H 1.09001 * 110.01611 * 59.29951 * 16 14 13 45 45 H 1.09010 * 110.48387 * 335.78402 * 17 16 14 46 46 H 1.08996 * 110.49125 * 98.42499 * 17 16 14 47 47 H 1.09009 * 110.71606 * 279.57166 * 18 17 16 48 48 H 1.09006 * 110.92623 * 156.29393 * 18 17 16 49 49 H 1.08998 * 110.48800 * 203.40953 * 19 18 17 50 50 H 1.08998 * 110.59593 * 80.81688 * 19 18 17 51 51 H 1.08997 * 110.03655 * 238.56747 * 20 16 14 52 52 H 1.08998 * 110.02935 * 359.95643 * 20 16 14 53 53 H 0.97000 * 120.00040 * 94.99981 * 21 4 2 54 54 H 0.96999 * 119.99889 * 180.27497 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 3.1263 -0.6443 1.2952 6 6 1.6352 -2.1954 1.1881 7 7 2.0182 -2.8593 2.4365 8 6 1.7595 -4.1707 2.6094 9 8 1.2091 -4.8009 1.7315 10 6 2.1540 -4.8537 3.8935 11 1 1.6484 -4.3729 4.7310 12 6 3.6685 -4.7476 4.0831 13 7 1.7664 -6.2652 3.8349 14 6 1.5418 -6.9502 4.9737 15 8 1.6601 -6.3979 6.0469 16 6 1.1424 -8.4021 4.9133 17 6 -0.2047 -8.5495 4.1763 18 6 -0.9329 -9.6838 4.9408 19 6 -0.5412 -9.4104 6.4142 20 6 0.9290 -8.9496 6.3355 21 7 1.4558 -0.1036 2.4423 22 6 2.0441 1.0003 2.9997 23 1 2.9385 1.4158 2.5595 24 6 1.4908 1.5852 4.1304 25 7 2.0594 2.6430 4.6693 26 14 -0.0558 0.8662 4.8923 27 1 -1.2502 1.5081 4.2869 28 1 -0.0982 -0.5965 4.6394 29 1 -0.0485 1.1154 6.3562 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.6767 1.9563 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 3.1299 1.4424 -0.0005 37 1 0.5561 -2.2706 1.0528 38 1 2.1407 -2.6766 0.3507 39 1 2.4587 -2.3553 3.1385 40 1 4.1741 -5.2284 3.2456 41 1 3.9565 -3.6973 4.1268 42 1 3.9540 -5.2420 5.0116 43 1 1.6714 -6.7068 2.9765 44 1 1.9127 -8.9800 4.4025 45 1 -0.7753 -7.6225 4.2354 46 1 -0.0418 -8.8327 3.1365 47 1 -0.5700 -10.6602 4.6194 48 1 -2.0125 -9.6118 4.8084 49 1 -0.6241 -10.3217 7.0064 50 1 -1.1655 -8.6234 6.8372 51 1 1.5949 -9.7937 6.5145 52 1 1.1150 -8.1653 7.0692 53 1 0.6523 -0.4765 2.8376 54 1 1.6750 3.0493 5.4618 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715493162.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:49 Heat of formation + Delta-G solvation = -108.415923 kcal Electronic energy + Delta-G solvation = -30761.720986 eV Core-core repulsion = 26731.776122 eV Total energy + Delta-G solvation = -4029.944864 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.66018 -40.64973 -39.01845 -38.06085 -36.10565 -35.45404 -34.75774 -32.65247 -32.21024 -30.01315 -29.57641 -29.30966 -27.85715 -26.02915 -25.03854 -23.66250 -22.66134 -21.60114 -21.34760 -20.78770 -20.41989 -19.61978 -18.84157 -17.88543 -17.43790 -16.97229 -16.72732 -16.59842 -16.20603 -15.97088 -15.84901 -15.46890 -15.14086 -14.90642 -14.67968 -14.57130 -14.52714 -14.34423 -14.23707 -13.68739 -13.46526 -13.39065 -12.99590 -12.88123 -12.79494 -12.76857 -12.64599 -12.48056 -12.27739 -12.13113 -12.05411 -12.03838 -11.96023 -11.82377 -11.68424 -11.43392 -11.39968 -11.25350 -11.06780 -10.89734 -10.82218 -10.28812 -10.07728 -9.25812 -7.95090 -5.25562 1.37550 1.38838 1.42867 1.45860 1.54686 1.79132 2.38828 2.50873 3.37182 3.45484 3.52629 3.62087 3.65468 3.78483 3.87224 3.96748 4.04267 4.23506 4.25140 4.29820 4.42057 4.45485 4.51772 4.53884 4.59658 4.65350 4.66792 4.71636 4.75417 4.78185 4.95412 4.95527 4.96831 5.07051 5.08949 5.11459 5.21019 5.21136 5.22462 5.25028 5.26742 5.30841 5.42483 5.45319 5.47148 5.58484 5.79354 5.90300 6.28065 6.42315 6.45021 7.04751 7.14632 7.15259 7.89827 8.07288 9.26241 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013236 B = 0.002732 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.905665 B =10247.612274 C =11139.229726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.102 4.102 3 C -0.138 4.138 4 C 0.172 3.828 5 H 0.062 0.938 6 C 0.118 3.882 7 N -0.709 5.709 8 C 0.514 3.486 9 O -0.567 6.567 10 C 0.124 3.876 11 H 0.097 0.903 12 C -0.151 4.151 13 N -0.704 5.704 14 C 0.517 3.483 15 O -0.579 6.579 16 C -0.106 4.106 17 C -0.115 4.115 18 C -0.118 4.118 19 C -0.126 4.126 20 C -0.121 4.121 21 N -0.741 5.741 22 C -0.196 4.196 23 H 0.072 0.928 24 C -0.058 4.058 25 N -0.983 5.983 26 Si 0.933 3.067 27 H -0.289 1.289 28 H -0.256 1.256 29 H -0.307 1.307 30 H 0.036 0.964 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.086 0.914 34 H 0.051 0.949 35 H 0.046 0.954 36 H 0.042 0.958 37 H 0.065 0.935 38 H 0.088 0.912 39 H 0.412 0.588 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.067 0.933 43 H 0.416 0.584 44 H 0.126 0.874 45 H 0.049 0.951 46 H 0.093 0.907 47 H 0.088 0.912 48 H 0.072 0.928 49 H 0.081 0.919 50 H 0.049 0.951 51 H 0.085 0.915 52 H 0.060 0.940 53 H 0.362 0.638 54 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.273 -25.509 -6.022 26.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.123 4.123 3 C -0.196 4.196 4 C 0.064 3.936 5 H 0.080 0.920 6 C -0.006 4.006 7 N -0.360 5.360 8 C 0.300 3.700 9 O -0.447 6.447 10 C 0.015 3.985 11 H 0.115 0.885 12 C -0.209 4.209 13 N -0.357 5.357 14 C 0.305 3.695 15 O -0.458 6.458 16 C -0.127 4.127 17 C -0.153 4.153 18 C -0.155 4.155 19 C -0.164 4.164 20 C -0.159 4.159 21 N -0.384 5.384 22 C -0.327 4.327 23 H 0.089 0.911 24 C -0.249 4.249 25 N -0.635 5.635 26 Si 0.764 3.236 27 H -0.216 1.216 28 H -0.181 1.181 29 H -0.235 1.235 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.104 0.896 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.083 0.917 38 H 0.106 0.894 39 H 0.248 0.752 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.086 0.914 43 H 0.254 0.746 44 H 0.144 0.856 45 H 0.068 0.932 46 H 0.112 0.888 47 H 0.107 0.893 48 H 0.091 0.909 49 H 0.100 0.900 50 H 0.068 0.932 51 H 0.104 0.896 52 H 0.079 0.921 53 H 0.195 0.805 54 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.416 -25.380 -5.882 26.091 hybrid contribution -0.841 0.766 0.995 1.511 sum -2.257 -24.615 -4.887 25.196 Atomic orbital electron populations 1.21750 0.95628 1.01229 1.01024 1.21549 0.96105 0.96494 0.98196 1.21759 0.99848 0.96817 1.01142 1.20707 0.97175 0.89114 0.86646 0.92012 1.21742 1.00634 0.92055 0.86196 1.45977 1.60452 1.09218 1.20326 1.20633 0.78287 0.82504 0.88616 1.90646 1.43997 1.65344 1.44731 1.20717 0.98493 0.83639 0.95681 0.88506 1.22063 0.91513 1.03967 1.03367 1.45733 1.69934 1.09897 1.10126 1.21269 0.74941 0.90372 0.82886 1.90675 1.53385 1.71491 1.30281 1.22032 1.00693 0.90253 0.99769 1.22396 0.93351 0.99326 1.00224 1.22515 1.00372 0.98652 0.94004 1.22378 0.95175 1.01120 0.97684 1.22179 0.97921 1.01029 0.94745 1.42778 1.31329 1.33118 1.31217 1.18946 1.06458 1.01963 1.05336 0.91052 1.25204 1.01433 0.98558 0.99691 1.69834 1.43469 1.25394 1.24755 0.85744 0.81558 0.79207 0.77135 1.21619 1.18128 1.23480 0.94512 0.92434 0.92345 0.89607 0.92983 0.93466 0.93892 0.91699 0.89379 0.75181 0.90543 0.90092 0.91395 0.74558 0.85605 0.93183 0.88844 0.89332 0.90933 0.90018 0.93192 0.89621 0.92105 0.80527 0.93838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.97 8.74 71.98 0.63 -3.34 16 2 C -0.10 -2.93 2.74 -10.79 -0.03 -2.96 16 3 C -0.14 -4.57 8.46 71.98 0.61 -3.96 16 4 C 0.17 5.34 2.28 44.99 0.10 5.44 16 5 H 0.06 1.98 8.08 -2.39 -0.02 1.96 16 6 C 0.12 3.16 5.10 86.38 0.44 3.60 16 7 N -0.71 -19.21 5.28 -463.07 -2.45 -21.65 16 8 C 0.51 13.89 7.22 87.66 0.63 14.53 16 9 O -0.57 -17.36 15.84 -3.01 -0.05 -17.41 16 10 C 0.12 3.04 2.98 44.25 0.13 3.17 16 11 H 0.10 2.76 7.58 -2.38 -0.02 2.74 16 12 C -0.15 -3.13 9.38 71.98 0.68 -2.46 16 13 N -0.70 -15.40 4.89 -446.10 -2.18 -17.59 16 14 C 0.52 12.19 6.97 87.66 0.61 12.80 16 15 O -0.58 -18.41 14.87 -3.04 -0.05 -18.45 16 16 C -0.11 -1.69 3.29 -10.82 -0.04 -1.73 16 17 C -0.12 -1.62 6.30 31.69 0.20 -1.42 16 18 C -0.12 -1.36 6.91 31.91 0.22 -1.14 16 19 C -0.13 -1.81 6.83 31.67 0.22 -1.59 16 20 C -0.12 -2.02 6.40 31.32 0.20 -1.82 16 21 N -0.74 -29.38 3.33 -322.95 -1.08 -30.45 16 22 C -0.20 -9.78 8.24 84.03 0.69 -9.09 16 23 H 0.07 3.90 7.55 -2.91 -0.02 3.88 16 24 C -0.06 -3.18 5.50 84.86 0.47 -2.71 16 25 N -0.98 -60.35 13.97 21.65 0.30 -60.05 16 26 Si 0.93 44.42 27.74 68.60 1.90 46.32 16 27 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 28 H -0.26 -11.06 6.51 99.48 0.65 -10.42 16 29 H -0.31 -15.34 7.11 99.48 0.71 -14.64 16 30 H 0.04 1.26 7.47 -2.39 -0.02 1.24 16 31 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 32 H 0.06 1.50 6.46 -2.39 -0.02 1.48 16 33 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.05 1.96 5.99 -2.39 -0.01 1.95 16 36 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.06 1.84 6.35 -2.38 -0.02 1.82 16 38 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.41 11.50 7.56 -92.71 -0.70 10.80 16 40 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 41 H 0.08 1.62 7.56 -2.39 -0.02 1.60 16 42 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.42 7.91 7.78 -92.71 -0.72 7.19 16 44 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.05 0.93 7.85 -2.38 -0.02 0.91 16 46 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 48 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 49 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 50 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 51 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 52 H 0.06 1.41 6.39 -2.39 -0.02 1.40 16 53 H 0.36 14.64 5.65 -92.71 -0.52 14.11 16 54 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -67.99 418.56 1.07 -66.92 By element: Atomic # 1 Polarization: 46.14 SS G_CDS: -1.10 Total: 45.04 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: 5.76 Total: 7.33 kcal Atomic # 7 Polarization: -124.34 SS G_CDS: -5.40 Total: -129.74 kcal Atomic # 8 Polarization: -35.77 SS G_CDS: -0.09 Total: -35.86 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.90 Total: 46.32 kcal Total: -67.99 1.07 -66.92 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715493162.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.495 kcal (2) G-P(sol) polarization free energy of solvation -67.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds