Wall clock time and date at job start Sat Apr 11 2020 05:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47065 * 2 1 4 4 N 1.46509 * 109.46641 * 240.00600 * 2 1 3 5 5 C 1.34767 * 119.99865 * 84.99959 * 4 2 1 6 6 O 1.21280 * 120.00300 * 0.02562 * 5 4 2 7 7 C 1.50706 * 120.00196 * 179.97438 * 5 4 2 8 8 C 1.52990 * 109.47432 * 180.02562 * 7 5 4 9 9 C 1.53001 * 109.47232 * 60.00098 * 8 7 5 10 10 C 1.52999 * 109.47165 * 180.02562 * 8 7 5 11 11 C 1.53001 * 109.47518 * 300.00067 * 8 7 5 12 12 C 1.50698 * 109.47207 * 120.00989 * 2 1 3 13 13 O 1.21283 * 120.00472 * 119.99880 * 12 2 1 14 14 N 1.34777 * 119.99538 * 299.99218 * 12 2 1 15 15 C 1.46499 * 119.99665 * 179.72653 * 14 12 2 16 16 H 1.08999 * 109.47480 * 35.27807 * 15 14 12 17 17 C 1.52999 * 109.47493 * 155.28120 * 15 14 12 18 18 N 1.46510 * 109.46482 * 304.99988 * 17 15 14 19 19 C 1.36939 * 119.99628 * 179.97438 * 18 17 15 20 20 H 1.07993 * 120.00228 * 0.02562 * 19 18 17 21 21 C 1.38815 * 119.99496 * 179.97438 * 19 18 17 22 22 N 1.31624 * 119.99565 * 180.02562 * 21 19 18 23 23 Si 1.86789 * 120.00243 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47744 * 89.99623 * 23 21 19 25 25 H 1.48510 * 109.47039 * 209.99876 * 23 21 19 26 26 H 1.48497 * 109.47226 * 329.99454 * 23 21 19 27 27 C 1.53008 * 109.47014 * 275.27733 * 15 14 12 28 28 C 1.53007 * 117.49696 * 128.74932 * 27 15 14 29 29 C 1.52998 * 117.50017 * 60.09194 * 27 15 14 30 30 H 1.09001 * 109.47038 * 299.99432 * 1 2 3 31 31 H 1.08995 * 109.47475 * 59.99036 * 1 2 3 32 32 H 1.09001 * 109.47406 * 179.97438 * 1 2 3 33 33 H 0.97001 * 119.99834 * 264.99973 * 4 2 1 34 34 H 1.09008 * 109.46948 * 300.00504 * 7 5 4 35 35 H 1.09007 * 109.46800 * 59.99877 * 7 5 4 36 36 H 1.08997 * 109.47182 * 60.00241 * 9 8 7 37 37 H 1.09003 * 109.46998 * 179.97438 * 9 8 7 38 38 H 1.09001 * 109.47451 * 299.99893 * 9 8 7 39 39 H 1.09000 * 109.47625 * 60.00038 * 10 8 7 40 40 H 1.09003 * 109.47406 * 179.97438 * 10 8 7 41 41 H 1.08997 * 109.47225 * 299.99744 * 10 8 7 42 42 H 1.09001 * 109.47123 * 59.99860 * 11 8 7 43 43 H 1.08995 * 109.47526 * 179.97438 * 11 8 7 44 44 H 1.09007 * 109.46806 * 300.00330 * 11 8 7 45 45 H 0.97001 * 120.00485 * 0.02562 * 14 12 2 46 46 H 1.08998 * 109.47318 * 64.99083 * 17 15 14 47 47 H 1.08988 * 109.47710 * 185.00333 * 17 15 14 48 48 H 0.97003 * 120.00089 * 359.97438 * 18 17 15 49 49 H 0.97000 * 120.00018 * 180.02562 * 22 21 19 50 50 H 1.08992 * 115.54981 * 274.41455 * 27 15 14 51 51 H 1.08999 * 117.49485 * 0.02562 * 28 27 15 52 52 H 1.09001 * 117.49917 * 145.01733 * 28 27 15 53 53 H 1.08993 * 117.49961 * 214.98139 * 29 27 15 54 54 H 1.09002 * 117.49657 * 359.97438 * 29 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1469 -0.0181 -2.3572 6 8 1.8589 1.1588 -2.4114 7 6 2.6497 -0.7282 -3.5877 8 6 2.7016 0.2551 -4.7586 9 6 3.6455 1.4089 -4.4142 10 6 3.2114 -0.4660 -6.0080 11 6 1.2991 0.8057 -5.0248 12 6 2.0324 -0.7106 1.2303 13 8 2.7296 -1.6967 1.1190 14 7 1.7068 -0.2502 2.4545 15 6 2.1902 -0.9445 3.6505 16 1 3.1900 -1.3366 3.4639 17 6 2.2376 0.0352 4.8248 18 7 3.0481 1.1991 4.4573 19 6 3.2334 2.2156 5.3559 20 1 2.7826 2.1591 6.3356 21 6 4.0017 3.3181 5.0078 22 7 4.1803 4.2949 5.8718 23 14 4.7821 3.4153 3.3136 24 1 3.8454 4.0833 2.3746 25 1 6.0432 4.1956 3.3935 26 1 5.0784 2.0445 2.8256 27 6 1.2442 -2.0989 3.9874 28 6 1.8649 -3.4806 4.2040 29 6 1.0612 -3.1928 2.9334 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8898 32 1 -0.3634 -1.0277 -0.0005 33 1 2.2489 -1.6317 -1.1529 34 1 3.6490 -1.1201 -3.3982 35 1 1.9774 -1.5505 -3.8328 36 1 4.6447 1.0167 -4.2246 37 1 3.6828 2.1092 -5.2487 38 1 3.2819 1.9226 -3.5243 39 1 2.5386 -1.2878 -6.2532 40 1 3.2479 0.2344 -6.8423 41 1 4.2105 -0.8586 -5.8187 42 1 0.9355 1.3194 -4.1349 43 1 1.3362 1.5066 -5.8587 44 1 0.6266 -0.0163 -5.2702 45 1 1.1490 0.5383 2.5436 46 1 1.2259 0.3594 5.0686 47 1 2.6801 -0.4568 5.6908 48 1 3.4533 1.2496 3.5774 49 1 4.7169 5.0655 5.6285 50 1 0.3785 -1.8353 4.5948 51 1 2.9471 -3.5669 4.1069 52 1 1.4072 -4.1260 4.9536 53 1 0.0750 -3.6490 2.8476 54 1 1.6143 -3.0897 1.9999 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716626751.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:57 Heat of formation + Delta-G solvation = -69.356550 kcal Electronic energy + Delta-G solvation = -31035.875729 eV Core-core repulsion = 27007.624607 eV Total energy + Delta-G solvation = -4028.251122 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.72558 -40.83791 -38.71646 -37.56000 -36.76835 -35.85697 -35.12347 -33.45812 -32.15814 -29.98170 -28.87286 -28.10510 -28.01447 -26.07169 -25.23376 -23.24839 -23.01585 -22.13967 -21.44598 -21.26924 -20.12000 -19.72933 -18.63388 -17.84176 -17.41034 -16.98859 -16.59115 -16.38970 -16.34210 -16.05653 -15.62926 -15.35407 -15.24929 -15.16849 -14.82546 -14.80030 -14.59582 -14.00490 -13.89642 -13.65010 -13.53313 -13.37697 -13.02769 -12.94871 -12.92459 -12.75634 -12.66654 -12.66516 -12.57666 -12.27155 -12.17527 -12.14776 -12.02080 -11.87421 -11.63655 -11.53565 -11.27391 -11.12203 -11.05354 -10.83869 -10.49903 -10.14623 -10.04227 -9.35072 -8.06764 -5.39601 1.32606 1.32932 1.39630 1.44750 1.60905 1.80689 2.36321 2.41733 2.99620 3.25501 3.41120 3.54167 3.70842 3.83232 3.86225 3.93215 4.01882 4.03377 4.09996 4.15904 4.25101 4.29272 4.41976 4.58024 4.60962 4.62620 4.64941 4.68061 4.77915 4.84400 4.84897 4.86923 4.87778 4.98598 5.06239 5.07413 5.09236 5.14246 5.17355 5.19132 5.30171 5.34922 5.35414 5.39497 5.50295 5.53270 5.67859 5.73551 6.17183 6.43876 6.52004 7.03162 7.08700 7.26573 7.78606 7.95959 9.14678 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.009381 B = 0.003407 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2984.196244 B = 8216.963498 C =10465.180474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.125 3.875 3 H 0.096 0.904 4 N -0.709 5.709 5 C 0.511 3.489 6 O -0.561 6.561 7 C -0.127 4.127 8 C -0.052 4.052 9 C -0.155 4.155 10 C -0.137 4.137 11 C -0.150 4.150 12 C 0.516 3.484 13 O -0.559 6.559 14 N -0.704 5.704 15 C 0.177 3.823 16 H 0.068 0.932 17 C 0.151 3.849 18 N -0.757 5.757 19 C -0.228 4.228 20 H 0.066 0.934 21 C -0.055 4.055 22 N -0.979 5.979 23 Si 0.944 3.056 24 H -0.275 1.275 25 H -0.297 1.297 26 H -0.267 1.267 27 C -0.166 4.166 28 C -0.168 4.168 29 C -0.176 4.176 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.415 0.585 34 H 0.106 0.894 35 H 0.119 0.881 36 H 0.049 0.951 37 H 0.052 0.948 38 H 0.056 0.944 39 H 0.068 0.932 40 H 0.057 0.943 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.050 0.950 44 H 0.059 0.941 45 H 0.411 0.589 46 H 0.048 0.952 47 H 0.043 0.957 48 H 0.363 0.637 49 H 0.258 0.742 50 H 0.120 0.880 51 H 0.083 0.917 52 H 0.111 0.889 53 H 0.103 0.897 54 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.058 -17.547 -21.098 28.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.016 3.984 3 H 0.114 0.886 4 N -0.363 5.363 5 C 0.300 3.700 6 O -0.440 6.440 7 C -0.167 4.167 8 C -0.052 4.052 9 C -0.212 4.212 10 C -0.195 4.195 11 C -0.208 4.208 12 C 0.302 3.698 13 O -0.439 6.439 14 N -0.354 5.354 15 C 0.072 3.928 16 H 0.086 0.914 17 C 0.025 3.975 18 N -0.403 5.403 19 C -0.359 4.359 20 H 0.084 0.916 21 C -0.247 4.247 22 N -0.630 5.630 23 Si 0.772 3.228 24 H -0.202 1.202 25 H -0.223 1.223 26 H -0.192 1.192 27 C -0.185 4.185 28 C -0.205 4.205 29 C -0.212 4.212 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.253 0.747 34 H 0.125 0.875 35 H 0.137 0.863 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.078 0.922 45 H 0.248 0.752 46 H 0.066 0.934 47 H 0.061 0.939 48 H 0.196 0.804 49 H 0.067 0.933 50 H 0.138 0.862 51 H 0.101 0.899 52 H 0.129 0.871 53 H 0.121 0.879 54 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.789 -17.306 -20.987 28.586 hybrid contribution 0.778 0.777 -0.286 1.136 sum -8.010 -16.529 -21.272 28.105 Atomic orbital electron populations 1.22042 0.90864 1.03731 1.03944 1.20706 0.97116 0.97168 0.83411 0.88584 1.45832 1.67389 1.14983 1.08124 1.21283 0.76561 0.87120 0.85040 1.90607 1.50960 1.17362 1.85039 1.21845 1.04268 0.99586 0.90976 1.20290 0.96135 0.94526 0.94270 1.22095 0.98537 0.98497 1.02087 1.21851 1.01418 1.00340 0.95843 1.22053 0.95700 1.01004 1.01994 1.20713 0.79596 0.84296 0.85185 1.90600 1.39035 1.27364 1.86870 1.45956 1.52968 1.31681 1.04821 1.20631 0.96880 0.91406 0.83834 0.91405 1.21061 0.95164 0.86253 0.95014 1.42703 1.61846 1.20585 1.15133 1.19037 1.24799 0.96130 0.95932 0.91626 1.25343 1.01599 0.96794 1.01007 1.69849 1.45834 1.10590 1.36720 0.85588 0.78192 0.77673 0.81300 1.20150 1.22341 1.19212 1.22523 1.01829 0.89247 1.04931 1.22983 0.99538 0.97439 1.00545 1.23211 1.02020 1.01480 0.94535 0.89861 0.91330 0.90689 0.74741 0.87539 0.86325 0.93145 0.92883 0.92514 0.91327 0.92372 0.92040 0.92201 0.93087 0.92236 0.75244 0.93422 0.93912 0.80404 0.93307 0.86220 0.89855 0.87060 0.87884 0.88223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.38 71.98 0.68 -1.92 16 2 C 0.12 2.82 2.99 44.24 0.13 2.95 16 3 H 0.10 2.57 7.58 -2.39 -0.02 2.55 16 4 N -0.71 -14.31 4.95 -446.09 -2.21 -16.52 16 5 C 0.51 10.88 7.21 87.66 0.63 11.51 16 6 O -0.56 -15.68 11.01 -3.03 -0.03 -15.71 16 7 C -0.13 -1.83 4.77 29.85 0.14 -1.69 16 8 C -0.05 -0.83 0.77 -52.18 -0.04 -0.87 16 9 C -0.15 -3.16 8.18 71.98 0.59 -2.57 16 10 C -0.14 -1.57 8.47 71.98 0.61 -0.96 16 11 C -0.15 -2.66 8.17 71.98 0.59 -2.07 16 12 C 0.52 13.31 6.55 87.66 0.57 13.89 16 13 O -0.56 -16.49 12.85 -3.04 -0.04 -16.53 16 14 N -0.70 -18.24 4.39 -442.52 -1.94 -20.18 16 15 C 0.18 5.01 2.43 44.99 0.11 5.12 16 16 H 0.07 2.24 7.34 -2.39 -0.02 2.22 16 17 C 0.15 5.21 5.80 86.38 0.50 5.71 16 18 N -0.76 -33.76 5.24 -343.45 -1.80 -35.56 16 19 C -0.23 -12.62 10.47 84.03 0.88 -11.74 16 20 H 0.07 3.93 8.06 -2.91 -0.02 3.90 16 21 C -0.06 -3.24 5.50 84.86 0.47 -2.77 16 22 N -0.98 -62.27 13.97 21.65 0.30 -61.97 16 23 Si 0.94 46.39 27.73 68.60 1.90 48.30 16 24 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 25 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 26 H -0.27 -12.38 6.52 99.48 0.65 -11.73 16 27 C -0.17 -3.72 5.36 -10.79 -0.06 -3.78 16 28 C -0.17 -3.50 10.18 30.62 0.31 -3.19 16 29 C -0.18 -3.67 9.73 30.62 0.30 -3.37 16 30 H 0.08 1.31 7.56 -2.39 -0.02 1.29 16 31 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.41 7.30 7.79 -92.71 -0.72 6.58 16 34 H 0.11 1.30 8.14 -2.38 -0.02 1.28 16 35 H 0.12 1.11 8.14 -2.38 -0.02 1.09 16 36 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.06 1.50 5.51 -2.39 -0.01 1.49 16 39 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.06 1.39 5.51 -2.39 -0.01 1.38 16 43 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 45 H 0.41 9.97 8.02 -92.71 -0.74 9.23 16 46 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 47 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 48 H 0.36 16.11 5.20 -92.71 -0.48 15.62 16 49 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 50 H 0.12 2.40 8.11 -2.39 -0.02 2.38 16 51 H 0.08 1.93 8.05 -2.39 -0.02 1.92 16 52 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 53 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 54 H 0.10 2.47 5.00 -2.39 -0.01 2.46 16 Total: -1.00 -70.84 421.01 1.49 -69.35 By element: Atomic # 1 Polarization: 45.66 SS G_CDS: -1.10 Total: 44.56 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: 6.41 Total: 4.27 kcal Atomic # 7 Polarization: -128.58 SS G_CDS: -5.65 Total: -134.23 kcal Atomic # 8 Polarization: -32.17 SS G_CDS: -0.07 Total: -32.24 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 1.90 Total: 48.30 kcal Total: -70.84 1.49 -69.35 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716626751.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.004 kcal (2) G-P(sol) polarization free energy of solvation -70.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds