Wall clock time and date at job start Sat Apr 11 2020 05:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.47391 * 2 1 4 4 O 1.42901 * 109.47262 * 119.99834 * 2 1 3 5 5 C 1.42895 * 114.00313 * 270.00399 * 4 2 1 6 6 C 1.53003 * 109.47298 * 180.02562 * 5 4 2 7 7 C 1.53001 * 117.51964 * 116.28202 * 6 5 4 8 8 C 1.52999 * 60.00190 * 107.47982 * 7 6 5 9 9 C 1.50697 * 109.47298 * 239.99898 * 2 1 3 10 10 O 1.21279 * 120.00188 * 244.99603 * 9 2 1 11 11 N 1.34776 * 119.99891 * 65.00005 * 9 2 1 12 12 C 1.46495 * 120.00295 * 179.97438 * 11 9 2 13 13 C 1.53002 * 109.47489 * 179.97438 * 12 11 9 14 14 N 1.46900 * 109.47451 * 180.02562 * 13 12 11 15 15 C 1.46850 * 111.00154 * 45.78633 * 14 13 12 16 16 C 1.53032 * 109.52217 * 185.84028 * 15 14 13 17 17 C 1.53113 * 109.28118 * 300.82555 * 16 15 14 18 18 N 1.46507 * 109.57552 * 177.59481 * 17 16 15 19 19 C 1.36933 * 120.00202 * 85.28346 * 18 17 16 20 20 H 1.07994 * 119.99973 * 359.97438 * 19 18 17 21 21 C 1.38816 * 119.99731 * 180.02562 * 19 18 17 22 22 N 1.31621 * 120.00148 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99633 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46917 * 90.00243 * 23 21 19 25 25 H 1.48502 * 109.46871 * 209.99824 * 23 21 19 26 26 H 1.48494 * 109.47536 * 330.00062 * 23 21 19 27 27 C 1.53117 * 109.16481 * 57.65357 * 17 16 15 28 28 C 1.46846 * 111.00316 * 170.00443 * 14 13 12 29 29 H 1.09000 * 109.47391 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47340 * 299.99514 * 1 2 3 31 31 H 1.09001 * 109.47741 * 60.00184 * 1 2 3 32 32 H 1.08999 * 109.47440 * 59.99511 * 5 4 2 33 33 H 1.09005 * 109.46905 * 299.99670 * 5 4 2 34 34 H 1.09002 * 115.54973 * 330.57985 * 6 5 4 35 35 H 1.09001 * 117.49733 * 214.97413 * 7 6 5 36 36 H 1.08995 * 117.49577 * 359.97438 * 7 6 5 37 37 H 1.09004 * 117.50150 * 252.51496 * 8 7 6 38 38 H 1.09004 * 117.49681 * 107.48417 * 8 7 6 39 39 H 0.97003 * 119.99868 * 0.02562 * 11 9 2 40 40 H 1.08998 * 109.47717 * 300.00369 * 12 11 9 41 41 H 1.09007 * 109.46725 * 60.00185 * 12 11 9 42 42 H 1.09000 * 109.47175 * 300.00126 * 13 12 11 43 43 H 1.08996 * 109.47141 * 59.99951 * 13 12 11 44 44 H 1.08997 * 109.46448 * 305.86253 * 15 14 13 45 45 H 1.09000 * 109.45674 * 65.82581 * 15 14 13 46 46 H 1.09006 * 109.50088 * 180.87831 * 16 15 14 47 47 H 1.09001 * 109.50396 * 60.76807 * 16 15 14 48 48 H 1.08999 * 109.52310 * 297.74758 * 17 16 15 49 49 H 0.97001 * 119.99682 * 265.28277 * 18 17 16 50 50 H 0.96999 * 119.99612 * 180.02562 * 22 21 19 51 51 H 1.08994 * 109.50730 * 182.40344 * 27 17 16 52 52 H 1.09003 * 109.50026 * 62.28501 * 27 17 16 53 53 H 1.09006 * 109.45622 * 294.17480 * 28 14 13 54 54 H 1.09000 * 109.46523 * 54.14650 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2000 0.1829 2.2941 6 6 2.7090 -0.6406 3.4788 7 6 4.1068 -0.3215 4.0130 8 6 2.8699 0.0767 4.8207 9 6 2.0323 -0.7104 -1.2304 10 8 2.6530 -1.7466 -1.1214 11 7 1.7919 -0.1942 -2.4519 12 6 2.2807 -0.8844 -3.6481 13 6 1.8753 -0.0946 -4.8942 14 7 2.3649 -0.7871 -6.0937 15 6 2.0822 -2.2264 -6.0227 16 6 2.7315 -2.9344 -7.2140 17 6 2.1746 -2.3494 -8.5147 18 7 2.8338 -2.9827 -9.6596 19 6 2.3600 -4.1692 -10.1523 20 1 1.5006 -4.6384 -9.6966 21 6 2.9850 -4.7695 -11.2367 22 7 4.0327 -4.1979 -11.7917 23 14 2.3391 -6.3885 -11.9083 24 1 1.3247 -6.1190 -12.9589 25 1 3.4620 -7.1654 -12.4921 26 1 1.7172 -7.1680 -10.8081 27 6 2.4392 -0.8415 -8.5415 28 6 1.7985 -0.1941 -7.3118 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.2537 0.6547 2.5589 33 1 2.9319 0.9513 2.0450 34 1 2.3877 -1.6820 3.5002 35 1 4.7051 -1.1530 4.3857 36 1 4.6642 0.4749 3.5201 37 1 2.6134 1.1355 4.8593 38 1 2.6544 -0.4928 5.7248 39 1 1.2958 0.6348 -2.5391 40 1 3.3670 -0.9623 -3.6043 41 1 1.8464 -1.8832 -3.6941 42 1 0.7889 -0.0173 -4.9379 43 1 2.3091 0.9042 -4.8484 44 1 2.4872 -2.6307 -5.0950 45 1 1.0044 -2.3864 -6.0485 46 1 2.5084 -4.0005 -7.1694 47 1 3.8109 -2.7863 -7.1812 48 1 1.1012 -2.5318 -8.5659 49 1 3.6059 -2.5614 -10.0686 50 1 4.4692 -4.6172 -12.5497 51 1 2.0074 -0.4122 -9.4455 52 1 3.5141 -0.6605 -8.5296 53 1 0.7219 -0.3637 -7.3315 54 1 1.9974 0.8775 -7.3205 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717016427.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:08 Heat of formation + Delta-G solvation = -67.366732 kcal Electronic energy + Delta-G solvation = -29031.854534 eV Core-core repulsion = 25003.689697 eV Total energy + Delta-G solvation = -4028.164837 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.14501 -40.15770 -39.20868 -37.53929 -37.06186 -35.77294 -34.09002 -32.70970 -31.79241 -31.33477 -28.91059 -28.07574 -26.24466 -25.07314 -24.56466 -23.37956 -23.26278 -22.17983 -21.85120 -21.33744 -20.73306 -19.09835 -18.39921 -18.17952 -17.44244 -16.90114 -16.82002 -16.52478 -16.23324 -16.01024 -15.64712 -15.47747 -15.42684 -15.21741 -15.12833 -14.76502 -14.50952 -14.15997 -14.00807 -13.91047 -13.61436 -13.24205 -13.12660 -12.99859 -12.86855 -12.69959 -12.62958 -12.50166 -12.38833 -12.21476 -12.17352 -12.04217 -12.01421 -11.76224 -11.51276 -11.42376 -11.29615 -11.16974 -10.92189 -10.84922 -10.40262 -10.16601 -9.25025 -8.99224 -7.94165 -5.22334 1.45809 1.47531 1.52846 1.55843 1.73254 2.55719 2.64027 2.94083 3.09620 3.38630 3.65088 3.76917 3.82089 3.84438 3.90601 3.95738 4.01552 4.04663 4.09068 4.15195 4.20517 4.33100 4.33920 4.36892 4.45748 4.49488 4.55719 4.67274 4.69966 4.71234 4.75247 4.76696 4.79639 4.88079 4.93623 4.96957 4.98298 5.00270 5.12207 5.18829 5.20609 5.20960 5.23763 5.34737 5.44282 5.49524 5.60669 6.08620 6.11613 6.17260 6.28626 6.53019 7.20158 7.33949 8.11295 8.34550 9.29433 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.022489 B = 0.001541 C = 0.001493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.775993 B =18168.650698 C =18745.610999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.074 3.926 3 H 0.121 0.879 4 O -0.391 6.391 5 C 0.090 3.910 6 C -0.175 4.175 7 C -0.187 4.187 8 C -0.154 4.154 9 C 0.506 3.494 10 O -0.577 6.577 11 N -0.707 5.707 12 C 0.120 3.880 13 C 0.055 3.945 14 N -0.545 5.545 15 C 0.062 3.938 16 C -0.124 4.124 17 C 0.171 3.829 18 N -0.738 5.738 19 C -0.239 4.239 20 H 0.072 0.928 21 C -0.076 4.076 22 N -0.970 5.970 23 Si 0.971 3.029 24 H -0.285 1.285 25 H -0.296 1.296 26 H -0.272 1.272 27 C -0.114 4.114 28 C 0.073 3.927 29 H 0.049 0.951 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.112 0.888 38 H 0.105 0.895 39 H 0.420 0.580 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.104 0.896 44 H 0.078 0.922 45 H 0.037 0.963 46 H 0.042 0.958 47 H 0.046 0.954 48 H 0.036 0.964 49 H 0.372 0.628 50 H 0.250 0.750 51 H 0.065 0.935 52 H 0.057 0.943 53 H 0.042 0.958 54 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.295 19.624 31.777 38.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.013 3.987 3 H 0.138 0.862 4 O -0.310 6.310 5 C 0.014 3.986 6 C -0.193 4.193 7 C -0.224 4.224 8 C -0.191 4.191 9 C 0.293 3.707 10 O -0.456 6.456 11 N -0.363 5.363 12 C -0.005 4.005 13 C -0.072 4.072 14 N -0.271 5.271 15 C -0.066 4.066 16 C -0.165 4.165 17 C 0.063 3.937 18 N -0.377 5.377 19 C -0.371 4.371 20 H 0.090 0.910 21 C -0.268 4.268 22 N -0.621 5.621 23 Si 0.800 3.200 24 H -0.212 1.212 25 H -0.223 1.223 26 H -0.197 1.197 27 C -0.152 4.152 28 C -0.055 4.055 29 H 0.068 0.932 30 H 0.108 0.892 31 H 0.116 0.884 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.114 0.886 35 H 0.111 0.889 36 H 0.118 0.882 37 H 0.130 0.870 38 H 0.123 0.877 39 H 0.258 0.742 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.122 0.878 44 H 0.096 0.904 45 H 0.055 0.945 46 H 0.061 0.939 47 H 0.065 0.935 48 H 0.054 0.946 49 H 0.203 0.797 50 H 0.059 0.941 51 H 0.084 0.916 52 H 0.076 0.924 53 H 0.060 0.940 54 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.433 18.594 31.814 37.802 hybrid contribution -0.560 -1.002 -1.008 1.528 sum -8.993 17.591 30.806 36.597 Atomic orbital electron populations 1.22246 0.91469 1.03266 1.05318 1.22030 0.96400 0.96829 0.83453 0.86187 1.88029 1.86901 1.35998 1.20050 1.22281 1.00574 0.91629 0.84136 1.22155 1.01529 1.00741 0.94912 1.23157 0.90944 1.03875 1.04410 1.23068 1.00663 1.01806 0.93529 1.21110 0.78941 0.85070 0.85601 1.90735 1.41795 1.25797 1.87230 1.45649 1.57787 1.28383 1.04448 1.21365 0.99421 0.95920 0.83748 1.22227 0.99315 0.98486 0.87220 1.61905 1.60074 1.02644 1.02449 1.22093 0.98067 0.88237 0.98233 1.22110 1.00079 0.98588 0.95676 1.20491 0.94681 0.92204 0.86337 1.42642 1.35649 1.24400 1.34995 1.19612 1.09494 0.98478 1.09545 0.90965 1.25530 0.98827 1.02631 0.99812 1.69821 1.24310 1.41657 1.26271 0.85179 0.76863 0.79706 0.78267 1.21231 1.22257 1.19699 1.21747 1.01217 0.94374 0.97885 1.22000 0.96336 0.99482 0.87711 0.93181 0.89234 0.88397 0.90488 0.91991 0.88605 0.88859 0.88171 0.86979 0.87668 0.74210 0.92398 0.92562 0.92339 0.87812 0.90389 0.94498 0.93904 0.93495 0.94595 0.79660 0.94093 0.91609 0.92389 0.94015 0.88168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.35 9.48 71.98 0.68 -0.66 16 2 C 0.07 0.98 3.13 29.84 0.09 1.08 16 3 H 0.12 0.74 7.79 -2.39 -0.02 0.72 16 4 O -0.39 -7.74 9.53 -129.99 -1.24 -8.98 16 5 C 0.09 1.10 6.03 71.98 0.43 1.53 16 6 C -0.18 -2.39 6.06 -10.79 -0.07 -2.45 16 7 C -0.19 -2.21 10.18 30.59 0.31 -1.90 16 8 C -0.15 -1.30 10.25 30.60 0.31 -0.99 16 9 C 0.51 10.62 7.18 87.66 0.63 11.25 16 10 O -0.58 -19.34 16.51 15.96 0.26 -19.08 16 11 N -0.71 -10.13 5.52 -463.07 -2.55 -12.68 16 12 C 0.12 2.32 4.92 86.38 0.43 2.75 16 13 C 0.06 0.87 5.39 86.30 0.46 1.33 16 14 N -0.54 -12.98 4.81 -896.37 -4.31 -17.29 16 15 C 0.06 1.76 4.85 86.32 0.42 2.18 16 16 C -0.12 -4.66 5.68 30.64 0.17 -4.48 16 17 C 0.17 6.91 2.84 45.07 0.13 7.04 16 18 N -0.74 -38.36 5.13 -322.57 -1.65 -40.01 16 19 C -0.24 -13.65 9.93 84.03 0.83 -12.82 16 20 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 21 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 22 N -0.97 -60.64 13.06 21.65 0.28 -60.36 16 23 Si 0.97 47.22 29.55 68.60 2.03 49.25 16 24 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 25 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 26 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 27 C -0.11 -3.67 5.57 30.64 0.17 -3.50 16 28 C 0.07 1.69 5.42 86.32 0.47 2.16 16 29 H 0.05 0.65 8.14 -2.39 -0.02 0.64 16 30 H 0.09 0.42 7.87 -2.39 -0.02 0.40 16 31 H 0.10 0.28 7.93 -2.39 -0.02 0.26 16 32 H 0.08 0.57 7.87 -2.39 -0.02 0.55 16 33 H 0.06 0.60 7.82 -2.38 -0.02 0.58 16 34 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.10 1.06 8.03 -2.39 -0.02 1.04 16 37 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 39 H 0.42 2.34 8.26 -92.71 -0.77 1.58 16 40 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.06 1.32 6.21 -2.38 -0.01 1.31 16 42 H 0.06 0.74 8.08 -2.39 -0.02 0.72 16 43 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.08 2.17 5.81 -2.39 -0.01 2.15 16 45 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 47 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 48 H 0.04 1.48 8.08 -2.39 -0.02 1.47 16 49 H 0.37 20.80 7.80 -92.71 -0.72 20.07 16 50 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 51 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 52 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 53 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 54 H 0.10 1.80 8.12 -2.39 -0.02 1.78 16 Total: -1.00 -79.51 429.47 -1.84 -81.35 By element: Atomic # 1 Polarization: 29.90 SS G_CDS: -0.61 Total: 29.29 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: 5.95 Total: -1.49 kcal Atomic # 7 Polarization: -122.11 SS G_CDS: -8.23 Total: -130.34 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -0.97 Total: -28.06 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.25 kcal Total: -79.51 -1.84 -81.35 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717016427.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.984 kcal (2) G-P(sol) polarization free energy of solvation -79.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds