Wall clock time and date at job start Sat Apr 11 2020 05:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.46940 * 2 1 4 4 C 1.46759 * 124.34962 * 90.00234 * 3 2 1 5 5 C 1.54485 * 105.47296 * 163.00347 * 4 3 2 6 6 H 1.09006 * 110.96710 * 267.25659 * 5 4 3 7 7 C 1.50697 * 110.96902 * 143.53792 * 5 4 3 8 8 O 1.21284 * 120.00264 * 331.71384 * 7 5 4 9 9 N 1.34774 * 120.00330 * 151.71609 * 7 5 4 10 10 C 1.46500 * 119.99517 * 5.09802 * 9 7 5 11 11 C 1.46498 * 120.00231 * 185.09550 * 9 7 5 12 12 C 1.53002 * 109.47188 * 270.00011 * 11 9 7 13 13 C 1.53002 * 109.46755 * 179.97438 * 12 11 9 14 14 H 1.08989 * 109.47441 * 304.99772 * 13 12 11 15 15 N 1.46501 * 109.47180 * 65.00693 * 13 12 11 16 16 C 1.36932 * 119.99901 * 204.99509 * 15 13 12 17 17 H 1.08001 * 119.99886 * 0.02562 * 16 15 13 18 18 C 1.38812 * 120.00033 * 179.97438 * 16 15 13 19 19 N 1.31619 * 119.99855 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00090 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47023 * 90.00319 * 20 18 16 22 22 H 1.48503 * 109.47015 * 210.00331 * 20 18 16 23 23 H 1.48500 * 109.47061 * 330.00251 * 20 18 16 24 24 C 1.53002 * 109.46626 * 185.00151 * 13 12 11 25 25 C 1.52999 * 109.47412 * 65.00247 * 24 13 12 26 26 C 1.53005 * 109.47213 * 305.00152 * 24 13 12 27 27 C 1.54625 * 101.76475 * 25.41501 * 5 4 3 28 28 C 1.34420 * 124.34823 * 270.02468 * 3 2 1 29 29 O 1.21278 * 124.94440 * 0.42221 * 28 3 2 30 30 H 1.08997 * 109.47020 * 60.00155 * 1 2 3 31 31 H 1.09003 * 109.47393 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47201 * 299.99868 * 1 2 3 33 33 H 1.08997 * 109.46876 * 239.99885 * 2 1 3 34 34 H 1.08992 * 109.46887 * 120.00323 * 2 1 3 35 35 H 1.09001 * 110.24822 * 44.00641 * 4 3 2 36 36 H 1.08995 * 110.24795 * 282.00164 * 4 3 2 37 37 H 1.08997 * 109.47481 * 298.50330 * 10 9 7 38 38 H 1.09000 * 109.47457 * 58.51004 * 10 9 7 39 39 H 1.09004 * 109.46887 * 178.50534 * 10 9 7 40 40 H 1.08999 * 109.47354 * 150.00306 * 11 9 7 41 41 H 1.09001 * 109.47136 * 30.00307 * 11 9 7 42 42 H 1.08999 * 109.46732 * 59.99914 * 12 11 9 43 43 H 1.09001 * 109.47323 * 300.00180 * 12 11 9 44 44 H 0.97005 * 120.00012 * 24.99232 * 15 13 12 45 45 H 0.96997 * 119.99736 * 179.97438 * 19 18 16 46 46 H 1.09008 * 109.47004 * 185.00143 * 24 13 12 47 47 H 1.08994 * 109.47615 * 179.97438 * 25 24 13 48 48 H 1.09000 * 109.46680 * 300.00066 * 25 24 13 49 49 H 1.08997 * 109.47157 * 59.99648 * 25 24 13 50 50 H 1.08992 * 109.46904 * 60.00358 * 26 24 13 51 51 H 1.09004 * 109.46848 * 180.02562 * 26 24 13 52 52 H 1.09001 * 109.47123 * 300.00053 * 26 24 13 53 53 H 1.09006 * 110.48386 * 93.88045 * 27 5 4 54 54 H 1.09004 * 110.48433 * 216.52418 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2944 2.1619 1.2117 5 6 3.1740 3.3444 0.7485 6 1 4.2329 3.1041 0.8450 7 6 2.8368 4.5989 1.5124 8 8 1.7180 4.7588 1.9524 9 7 3.7785 5.5434 1.7065 10 6 5.0960 5.4034 1.0813 11 6 3.4846 6.7099 2.5426 12 6 2.9071 7.8284 1.6729 13 6 2.5996 9.0463 2.5463 14 1 1.9441 8.7501 3.3651 15 7 3.8486 9.5846 3.0908 16 6 3.8335 10.3057 4.2548 17 1 2.9008 10.4772 4.7716 18 6 5.0170 10.8153 4.7711 19 7 6.1537 10.6058 4.1415 20 14 4.9964 11.7984 6.3594 21 1 5.1792 10.8803 7.5122 22 1 6.0982 12.7938 6.3397 23 1 3.6954 12.5026 6.4888 24 6 1.9080 10.1181 1.7014 25 6 0.5459 9.5999 1.2355 26 6 2.7736 10.4442 0.4827 27 6 2.7687 3.4757 -0.7379 28 6 2.2707 2.0964 -1.1098 29 8 2.1204 1.6947 -2.2442 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 2.8328 1.5532 1.9381 36 1 1.3638 2.5304 1.6431 37 1 5.5792 4.4989 1.4506 38 1 4.9797 5.3376 -0.0005 39 1 5.7094 6.2699 1.3286 40 1 4.4021 7.0565 3.0182 41 1 2.7599 6.4344 3.3088 42 1 1.9897 7.4818 1.1973 43 1 3.6319 8.1038 0.9067 44 1 4.6864 9.4302 2.6268 45 1 6.9806 10.9622 4.5020 46 1 1.7688 11.0187 2.2997 47 1 0.0529 10.3636 0.6340 48 1 0.6850 8.6995 0.6373 49 1 -0.0708 9.3676 2.1037 50 1 2.9127 9.5437 -0.1155 51 1 2.2810 11.2081 -0.1190 52 1 3.7440 10.8134 0.8146 53 1 1.9734 4.2122 -0.8528 54 1 3.6317 3.7466 -1.3461 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717513436.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:22 Heat of formation + Delta-G solvation = -87.268082 kcal Electronic energy + Delta-G solvation = -30876.974888 eV Core-core repulsion = 26847.947064 eV Total energy + Delta-G solvation = -4029.027825 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.96017 -40.52288 -38.98366 -37.46731 -36.56717 -35.06450 -34.92027 -32.75168 -31.51910 -30.48540 -28.80822 -27.93555 -27.76703 -26.83008 -25.29555 -24.45255 -23.76486 -22.81687 -20.50594 -20.00846 -19.85235 -19.20730 -18.61772 -17.81655 -17.03294 -16.89532 -16.82009 -16.39745 -16.22766 -15.68205 -15.59417 -15.10049 -14.89798 -14.89369 -14.74911 -14.52131 -14.44093 -14.23865 -14.15829 -13.81264 -13.61859 -13.31088 -13.19129 -12.99266 -12.94196 -12.86166 -12.77612 -12.74151 -12.53096 -12.48500 -12.32217 -12.17519 -12.05837 -12.00445 -11.80849 -11.66659 -11.35914 -11.22472 -11.08184 -10.83539 -10.68935 -9.79777 -9.60977 -8.88241 -7.88270 -5.13060 1.41183 1.48804 1.49713 1.53024 1.57032 1.87454 2.11589 2.60032 3.14006 3.40558 3.45010 3.58355 3.85014 3.94036 4.03420 4.05451 4.11558 4.15029 4.24048 4.28566 4.38585 4.44047 4.45581 4.52926 4.55082 4.58347 4.62657 4.71222 4.74953 4.78153 4.80230 4.83277 4.89557 4.91359 4.92164 5.00263 5.03393 5.11372 5.16420 5.24291 5.25430 5.38136 5.42292 5.52967 5.55981 5.59774 5.64487 5.70988 6.01736 6.35007 6.44634 7.05303 7.14388 7.42353 8.18214 8.43940 9.34614 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.016890 B = 0.002412 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.370599 B =11604.363224 C =12136.323655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.116 3.884 3 N -0.614 5.614 4 C 0.115 3.885 5 C -0.111 4.111 6 H 0.145 0.855 7 C 0.522 3.478 8 O -0.573 6.573 9 N -0.606 5.606 10 C 0.067 3.933 11 C 0.129 3.871 12 C -0.118 4.118 13 C 0.183 3.817 14 H 0.031 0.969 15 N -0.723 5.723 16 C -0.228 4.228 17 H 0.066 0.934 18 C -0.069 4.069 19 N -0.963 5.963 20 Si 0.959 3.041 21 H -0.290 1.290 22 H -0.298 1.298 23 H -0.277 1.277 24 C -0.111 4.111 25 C -0.136 4.136 26 C -0.128 4.128 27 C -0.133 4.133 28 C 0.515 3.485 29 O -0.575 6.575 30 H 0.034 0.966 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.058 0.942 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.375 0.625 45 H 0.248 0.752 46 H 0.040 0.960 47 H 0.059 0.941 48 H 0.059 0.941 49 H 0.047 0.953 50 H 0.061 0.939 51 H 0.051 0.949 52 H 0.034 0.966 53 H 0.100 0.900 54 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.078 -20.017 -8.975 22.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.005 4.005 3 N -0.347 5.347 4 C -0.007 4.007 5 C -0.133 4.133 6 H 0.163 0.837 7 C 0.310 3.690 8 O -0.453 6.453 9 N -0.337 5.337 10 C -0.075 4.075 11 C 0.006 3.994 12 C -0.157 4.157 13 C 0.074 3.926 14 H 0.049 0.951 15 N -0.363 5.363 16 C -0.360 4.360 17 H 0.084 0.916 18 C -0.262 4.262 19 N -0.615 5.615 20 Si 0.789 3.211 21 H -0.217 1.217 22 H -0.225 1.225 23 H -0.202 1.202 24 C -0.132 4.132 25 C -0.194 4.194 26 C -0.186 4.186 27 C -0.174 4.174 28 C 0.303 3.697 29 O -0.455 6.455 30 H 0.053 0.947 31 H 0.106 0.894 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.128 0.872 35 H 0.131 0.869 36 H 0.093 0.907 37 H 0.106 0.894 38 H 0.102 0.898 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.208 0.792 45 H 0.057 0.943 46 H 0.059 0.941 47 H 0.078 0.922 48 H 0.078 0.922 49 H 0.066 0.934 50 H 0.080 0.920 51 H 0.070 0.930 52 H 0.053 0.947 53 H 0.118 0.882 54 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.811 -20.152 -9.141 22.879 hybrid contribution 0.353 1.107 0.954 1.504 sum -5.458 -19.045 -8.187 21.437 Atomic orbital electron populations 1.22138 0.95717 1.03291 1.01405 1.21564 0.94524 0.80089 1.04299 1.48478 1.64763 1.14462 1.06961 1.22104 1.00186 0.91384 0.87062 1.22250 1.04223 0.92392 0.94397 0.83706 1.20506 0.84038 0.84740 0.79737 1.90708 1.22523 1.79807 1.52268 1.47986 1.14812 1.21488 1.49424 1.22138 0.82330 1.04135 0.98913 1.21313 1.00990 0.84569 0.92527 1.22032 1.01111 0.94267 0.98313 1.20333 0.87585 0.91354 0.93364 0.95070 1.42491 1.04684 1.63131 1.26002 1.19486 0.92954 1.24019 0.99526 0.91590 1.25310 0.95489 1.03463 1.01923 1.69766 0.97779 1.52246 1.41672 0.85353 0.76690 0.78325 0.80686 1.21714 1.22499 1.20222 1.21651 0.95560 0.98960 0.97075 1.21793 0.95786 1.01068 1.00766 1.21646 0.99121 1.00946 0.96855 1.22259 1.04753 0.95135 0.95212 1.21114 0.76389 0.88010 0.84142 1.90703 1.55993 1.76119 1.22723 0.94661 0.89391 0.92278 0.90611 0.87212 0.86911 0.90681 0.89405 0.89790 0.90595 0.90762 0.92370 0.91178 0.91309 0.79222 0.94260 0.94130 0.92240 0.92156 0.93427 0.91976 0.92966 0.94679 0.88184 0.85031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 10.24 71.98 0.74 -1.52 16 2 C 0.12 1.50 6.65 86.38 0.57 2.08 16 3 N -0.61 -10.13 2.93 -818.01 -2.40 -12.53 16 4 C 0.12 1.63 6.86 86.83 0.60 2.22 16 5 C -0.11 -1.56 2.90 -10.48 -0.03 -1.59 16 6 H 0.15 1.12 6.62 -2.38 -0.02 1.11 16 7 C 0.52 11.60 6.72 87.66 0.59 12.19 16 8 O -0.57 -17.54 15.38 -3.04 -0.05 -17.59 16 9 N -0.61 -13.49 2.87 -846.76 -2.43 -15.92 16 10 C 0.07 0.98 9.56 127.77 1.22 2.20 16 11 C 0.13 3.90 5.22 86.38 0.45 4.35 16 12 C -0.12 -3.64 4.28 30.60 0.13 -3.51 16 13 C 0.18 6.89 2.06 44.99 0.09 6.98 16 14 H 0.03 1.28 8.08 -2.39 -0.02 1.26 16 15 N -0.72 -33.61 4.03 -322.95 -1.30 -34.91 16 16 C -0.23 -12.10 9.93 84.03 0.83 -11.27 16 17 H 0.07 3.49 7.83 -2.91 -0.02 3.47 16 18 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 19 N -0.96 -56.05 13.06 21.65 0.28 -55.77 16 20 Si 0.96 45.38 29.55 68.60 2.03 47.41 16 21 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 22 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 23 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 24 C -0.11 -3.85 2.88 -10.79 -0.03 -3.88 16 25 C -0.14 -3.85 8.95 71.98 0.64 -3.21 16 26 C -0.13 -4.14 8.59 71.98 0.62 -3.52 16 27 C -0.13 -2.11 6.41 30.59 0.20 -1.92 16 28 C 0.51 10.96 8.02 87.90 0.71 11.66 16 29 O -0.58 -16.93 17.60 -3.02 -0.05 -16.98 16 30 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.08 1.11 7.93 -2.39 -0.02 1.09 16 34 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.07 1.40 6.93 -2.39 -0.02 1.38 16 37 H 0.09 0.83 7.34 -2.39 -0.02 0.81 16 38 H 0.08 0.86 8.11 -2.39 -0.02 0.84 16 39 H 0.08 1.34 7.81 -2.38 -0.02 1.32 16 40 H 0.07 2.53 7.54 -2.39 -0.02 2.52 16 41 H 0.06 1.99 7.50 -2.39 -0.02 1.97 16 42 H 0.07 2.11 6.34 -2.39 -0.02 2.09 16 43 H 0.07 2.05 6.65 -2.39 -0.02 2.04 16 44 H 0.38 18.47 7.80 -92.70 -0.72 17.75 16 45 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 46 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 47 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 48 H 0.06 1.59 6.46 -2.39 -0.02 1.58 16 49 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 50 H 0.06 1.76 6.46 -2.39 -0.02 1.75 16 51 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 52 H 0.03 1.33 7.75 -2.39 -0.02 1.31 16 53 H 0.10 1.85 7.89 -2.38 -0.02 1.83 16 54 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -71.97 426.30 4.02 -67.95 By element: Atomic # 1 Polarization: 30.30 SS G_CDS: 0.15 Total: 30.45 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: 7.80 Total: 7.89 kcal Atomic # 7 Polarization: -113.28 SS G_CDS: -5.85 Total: -119.13 kcal Atomic # 8 Polarization: -34.47 SS G_CDS: -0.10 Total: -34.57 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -71.97 4.02 -67.95 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717513436.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.319 kcal (2) G-P(sol) polarization free energy of solvation -71.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds