Wall clock time and date at job start Sat Apr 11 2020 05:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46898 * 109.47493 * 2 1 4 4 C 1.46850 * 110.99834 * 71.52819 * 3 2 1 5 5 C 1.53039 * 109.52225 * 185.84208 * 4 3 2 6 6 C 1.53114 * 109.27709 * 300.82117 * 5 4 3 7 7 C 1.53118 * 109.16380 * 57.65310 * 6 5 4 8 8 C 1.46844 * 111.00364 * 195.73694 * 3 2 1 9 9 H 1.08998 * 109.46361 * 294.18323 * 8 3 2 10 10 C 1.50706 * 109.46033 * 54.15752 * 8 3 2 11 11 O 1.21274 * 120.00308 * 26.32708 * 10 8 3 12 12 N 1.34783 * 119.99973 * 206.32412 * 10 8 3 13 13 C 1.46928 * 120.62623 * 4.31220 * 12 10 8 14 14 C 1.52763 * 109.00580 * 233.58060 * 13 12 10 15 15 C 1.53041 * 109.38114 * 305.59127 * 14 13 12 16 16 O 1.42891 * 109.46108 * 301.21561 * 15 14 13 17 17 C 1.53007 * 109.45627 * 181.25705 * 15 14 13 18 18 N 1.46500 * 109.47081 * 59.93318 * 17 15 14 19 19 C 1.36933 * 120.00297 * 179.97438 * 18 17 15 20 20 H 1.07997 * 119.99847 * 359.97438 * 19 18 17 21 21 C 1.38810 * 120.00388 * 180.02562 * 19 18 17 22 22 N 1.31621 * 119.99785 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00300 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.46932 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47210 * 119.99363 * 23 21 19 26 26 H 1.48493 * 109.47308 * 239.99813 * 23 21 19 27 27 C 1.53040 * 109.54226 * 61.24342 * 15 14 13 28 28 C 1.46921 * 120.63150 * 184.58832 * 12 10 8 29 29 H 1.09007 * 109.46930 * 59.99544 * 1 2 3 30 30 H 1.09003 * 109.47137 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46889 * 299.99861 * 1 2 3 32 32 H 1.09002 * 109.46889 * 240.00139 * 2 1 3 33 33 H 1.08999 * 109.47535 * 120.00585 * 2 1 3 34 34 H 1.09007 * 109.45849 * 305.85749 * 4 3 2 35 35 H 1.08994 * 109.46047 * 65.82218 * 4 3 2 36 36 H 1.08997 * 109.50489 * 60.75915 * 5 4 3 37 37 H 1.08996 * 109.50022 * 180.83609 * 5 4 3 38 38 H 1.09003 * 109.52521 * 177.56303 * 6 5 4 39 39 H 1.09002 * 109.52311 * 297.68244 * 6 5 4 40 40 H 1.09001 * 109.50297 * 182.40293 * 7 6 5 41 41 H 1.09001 * 109.50244 * 62.28937 * 7 6 5 42 42 H 1.09002 * 109.58855 * 353.41556 * 13 12 10 43 43 H 1.09003 * 109.58772 * 113.84688 * 13 12 10 44 44 H 1.08994 * 109.56713 * 185.55108 * 14 13 12 45 45 H 1.09001 * 109.38752 * 65.51387 * 14 13 12 46 46 H 0.96699 * 114.00458 * 300.07135 * 16 15 14 47 47 H 1.08998 * 109.46850 * 179.97438 * 17 15 14 48 48 H 1.08994 * 109.47639 * 299.93399 * 17 15 14 49 49 H 0.97004 * 120.00071 * 359.97438 * 18 17 15 50 50 H 0.97000 * 119.99513 * 179.97438 * 22 21 19 51 51 H 1.08992 * 109.50138 * 178.68093 * 27 15 14 52 52 H 1.09004 * 109.52452 * 58.59495 * 27 15 14 53 53 H 1.08996 * 109.58668 * 246.15809 * 28 12 10 54 54 H 1.08999 * 109.58714 * 6.43833 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7856 2.0259 1.3003 5 6 2.1731 3.5042 1.2190 6 6 3.6497 3.6191 0.8307 7 6 3.8760 2.9020 -0.5031 8 6 3.4392 1.4412 -0.3718 9 1 4.0359 0.9514 0.3977 10 6 3.6417 0.7366 -1.6885 11 8 2.7277 0.6597 -2.4820 12 7 4.8385 0.1919 -1.9843 13 6 5.9265 0.1940 -0.9969 14 6 7.1702 0.8169 -1.6283 15 6 7.5024 0.0812 -2.9285 16 8 7.7221 -1.3028 -2.6496 17 6 8.7660 0.6834 -3.5463 18 7 9.8819 0.5461 -2.6071 19 6 11.1230 1.0157 -2.9449 20 1 11.2793 1.4870 -3.9040 21 6 12.1804 0.8852 -2.0552 22 7 11.9900 0.3104 -0.8865 23 14 13.8733 1.5265 -2.5158 24 1 13.8231 2.1255 -3.8738 25 1 14.2957 2.5580 -1.5346 26 1 14.8470 0.4054 -2.5056 27 6 6.3369 0.2249 -3.9100 28 6 5.0819 -0.4097 -3.3024 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 0.7310 1.9406 1.5626 35 1 2.3900 1.5334 2.0620 36 1 1.5594 4.0004 0.4671 37 1 2.0132 3.9761 2.1884 38 1 3.9189 4.6705 0.7293 39 1 4.2662 3.1581 1.6024 40 1 4.9335 2.9437 -0.7638 41 1 3.2891 3.3887 -1.2821 42 1 5.6287 0.7784 -0.1262 43 1 6.1474 -0.8296 -0.6943 44 1 8.0102 0.7341 -0.9386 45 1 6.9788 1.8681 -1.8438 46 1 8.4481 -1.4694 -2.0330 47 1 9.0030 0.1593 -4.4722 48 1 8.5987 1.7391 -3.7597 49 1 9.7416 0.1225 -1.7458 50 1 12.7291 0.2188 -0.2650 51 1 6.5837 -0.2794 -4.8442 52 1 6.1526 1.2814 -4.1045 53 1 5.2325 -1.4836 -3.1917 54 1 4.2260 -0.2258 -3.9517 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724986460.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:46 Heat of formation + Delta-G solvation = -91.375500 kcal Electronic energy + Delta-G solvation = -31948.422316 eV Core-core repulsion = 27919.216380 eV Total energy + Delta-G solvation = -4029.205936 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.89414 -40.32742 -38.90114 -36.84739 -35.78894 -35.22127 -33.57732 -33.02749 -31.84983 -31.68372 -30.72343 -28.33188 -26.20144 -25.37350 -24.77933 -24.46823 -23.16858 -22.43649 -21.54239 -20.84167 -19.87433 -19.46016 -18.42919 -17.50481 -17.28314 -16.73963 -16.56964 -16.24479 -16.05117 -15.76556 -15.60141 -15.40169 -15.14629 -15.14188 -14.90376 -14.43252 -14.38485 -14.24649 -14.20103 -13.99185 -13.67424 -13.44106 -13.19443 -13.01112 -12.82376 -12.80316 -12.72178 -12.67703 -12.32424 -12.30210 -12.22930 -12.08406 -12.03228 -11.98259 -11.73509 -11.57887 -11.32515 -11.24184 -10.98329 -10.81431 -10.54376 -9.66692 -9.27749 -9.02002 -7.97039 -5.24887 1.47567 1.49001 1.52591 1.57806 1.86390 2.54660 2.83653 3.24336 3.35230 3.40993 3.61969 3.70520 3.80783 3.87048 3.92599 3.95846 4.02892 4.11268 4.21277 4.22293 4.27925 4.30985 4.41489 4.43501 4.54219 4.56747 4.58412 4.68121 4.72292 4.74521 4.76549 4.82214 4.87873 4.90028 4.94482 4.96720 5.06095 5.07484 5.10763 5.13920 5.19341 5.22380 5.30867 5.34245 5.45379 5.49334 5.50824 5.96702 6.13156 6.25141 6.38684 6.73738 7.13361 7.33538 8.03801 8.29534 9.25703 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.017222 B = 0.002712 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.429010 B =10322.026088 C =11248.067505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.045 3.955 3 N -0.531 5.531 4 C 0.054 3.946 5 C -0.115 4.115 6 C -0.117 4.117 7 C -0.104 4.104 8 C 0.073 3.927 9 H 0.072 0.928 10 C 0.518 3.482 11 O -0.562 6.562 12 N -0.605 5.605 13 C 0.116 3.884 14 C -0.148 4.148 15 C 0.138 3.862 16 O -0.563 6.563 17 C 0.129 3.871 18 N -0.735 5.735 19 C -0.245 4.245 20 H 0.070 0.930 21 C -0.067 4.067 22 N -0.962 5.962 23 Si 0.968 3.032 24 H -0.271 1.271 25 H -0.292 1.292 26 H -0.294 1.294 27 C -0.110 4.110 28 C 0.124 3.876 29 H 0.048 0.952 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.038 0.962 34 H 0.089 0.911 35 H 0.040 0.960 36 H 0.063 0.937 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.061 0.939 42 H 0.102 0.898 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.382 0.618 47 H 0.019 0.981 48 H 0.027 0.973 49 H 0.377 0.623 50 H 0.252 0.748 51 H 0.086 0.914 52 H 0.083 0.917 53 H 0.072 0.928 54 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.573 2.773 5.881 22.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.082 4.082 3 N -0.257 5.257 4 C -0.073 4.073 5 C -0.153 4.153 6 C -0.154 4.154 7 C -0.142 4.142 8 C -0.038 4.038 9 H 0.090 0.910 10 C 0.306 3.694 11 O -0.440 6.440 12 N -0.338 5.338 13 C -0.006 4.006 14 C -0.187 4.187 15 C 0.097 3.903 16 O -0.370 6.370 17 C 0.002 3.998 18 N -0.380 5.380 19 C -0.377 4.377 20 H 0.088 0.912 21 C -0.260 4.260 22 N -0.612 5.612 23 Si 0.797 3.203 24 H -0.196 1.196 25 H -0.219 1.219 26 H -0.221 1.221 27 C -0.149 4.149 28 C 0.002 3.998 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.057 0.943 34 H 0.107 0.893 35 H 0.058 0.942 36 H 0.082 0.918 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.080 0.920 42 H 0.120 0.880 43 H 0.095 0.905 44 H 0.094 0.906 45 H 0.093 0.907 46 H 0.231 0.769 47 H 0.037 0.963 48 H 0.045 0.955 49 H 0.211 0.789 50 H 0.061 0.939 51 H 0.105 0.895 52 H 0.101 0.899 53 H 0.090 0.910 54 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -22.713 2.996 4.573 23.361 hybrid contribution 2.319 -0.375 0.772 2.473 sum -20.394 2.621 5.345 21.245 Atomic orbital electron populations 1.21654 0.93529 1.01917 1.02131 1.22155 0.97586 0.88369 1.00125 1.61709 1.14882 1.17899 1.31224 1.22265 1.02070 0.95143 0.87849 1.21606 0.95979 0.95144 1.02547 1.21580 0.97116 1.01142 0.95588 1.21524 1.01164 0.91759 0.99786 1.21663 0.90957 0.97817 0.93407 0.91019 1.20836 0.81548 0.77720 0.89258 1.90654 1.41844 1.59879 1.51605 1.48222 1.12324 1.57715 1.15551 1.21720 0.85589 1.02343 0.90982 1.22341 0.98091 1.00491 0.97738 1.21227 0.93239 0.81467 0.94370 1.86378 1.57243 1.24151 1.69215 1.21431 0.87792 0.97728 0.92880 1.42376 1.05662 1.71797 1.18136 1.19553 0.87495 1.30346 1.00281 0.91216 1.25432 1.01413 1.02424 0.96693 1.69760 1.31949 1.50494 1.09008 0.85164 0.80416 0.77203 0.77490 1.19571 1.21932 1.22133 1.21812 0.92610 1.02217 0.98249 1.21404 0.97262 0.97444 0.83701 0.93317 0.91541 0.91524 0.92510 0.94349 0.89287 0.94175 0.91849 0.89354 0.90303 0.91084 0.90740 0.92002 0.88022 0.90473 0.90598 0.90663 0.76947 0.96289 0.95486 0.78886 0.93891 0.89500 0.89890 0.90989 0.89811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.36 9.96 71.98 0.72 -1.64 16 2 C 0.05 0.94 5.30 86.30 0.46 1.40 16 3 N -0.53 -11.06 4.21 -875.51 -3.68 -14.75 16 4 C 0.05 0.81 5.30 86.33 0.46 1.27 16 5 C -0.12 -1.54 6.09 30.65 0.19 -1.36 16 6 C -0.12 -1.68 6.00 30.67 0.18 -1.50 16 7 C -0.10 -1.99 5.27 30.64 0.16 -1.83 16 8 C 0.07 1.54 1.43 44.19 0.06 1.61 16 9 H 0.07 1.35 6.21 -2.39 -0.01 1.34 16 10 C 0.52 13.78 5.66 87.66 0.50 14.28 16 11 O -0.56 -18.74 14.61 -3.01 -0.04 -18.78 16 12 N -0.60 -15.01 2.98 -819.72 -2.44 -17.45 16 13 C 0.12 2.60 6.00 86.22 0.52 3.12 16 14 C -0.15 -3.99 4.91 30.53 0.15 -3.84 16 15 C 0.14 4.13 0.71 -10.76 -0.01 4.12 16 16 O -0.56 -17.71 11.71 -148.98 -1.74 -19.46 16 17 C 0.13 4.86 5.40 86.38 0.47 5.33 16 18 N -0.73 -34.25 5.07 -343.46 -1.74 -35.99 16 19 C -0.24 -13.06 9.99 84.03 0.84 -12.22 16 20 H 0.07 3.66 7.83 -2.91 -0.02 3.64 16 21 C -0.07 -3.65 5.50 84.86 0.47 -3.18 16 22 N -0.96 -55.19 13.06 21.65 0.28 -54.90 16 23 Si 0.97 44.61 29.55 68.60 2.03 46.64 16 24 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 25 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 26 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 27 C -0.11 -2.88 5.11 30.67 0.16 -2.72 16 28 C 0.12 3.20 6.18 86.36 0.53 3.74 16 29 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.07 0.95 6.64 -2.39 -0.02 0.93 16 32 H 0.06 1.49 5.60 -2.39 -0.01 1.48 16 33 H 0.04 0.71 8.06 -2.39 -0.02 0.69 16 34 H 0.09 1.18 6.48 -2.38 -0.02 1.17 16 35 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.06 0.98 8.14 -2.39 -0.02 0.97 16 37 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.07 1.40 8.03 -2.39 -0.02 1.39 16 41 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.10 1.88 5.29 -2.39 -0.01 1.87 16 43 H 0.08 1.75 7.81 -2.39 -0.02 1.73 16 44 H 0.08 2.34 6.82 -2.39 -0.02 2.32 16 45 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 46 H 0.38 12.22 7.85 -74.06 -0.58 11.63 16 47 H 0.02 0.76 8.14 -2.39 -0.02 0.75 16 48 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 49 H 0.38 17.90 5.58 -92.71 -0.52 17.39 16 50 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 51 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 52 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 53 H 0.07 1.91 7.81 -2.39 -0.02 1.89 16 54 H 0.08 2.26 7.03 -2.39 -0.02 2.24 16 Total: -1.00 -64.67 402.51 -1.70 -66.37 By element: Atomic # 1 Polarization: 41.95 SS G_CDS: -0.21 Total: 41.74 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: 5.85 Total: 6.57 kcal Atomic # 7 Polarization: -115.50 SS G_CDS: -7.58 Total: -123.09 kcal Atomic # 8 Polarization: -36.45 SS G_CDS: -1.79 Total: -38.24 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -64.67 -1.70 -66.37 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724986460.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.003 kcal (2) G-P(sol) polarization free energy of solvation -64.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds