Wall clock time and date at job start Sat Apr 11 2020 05:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46908 * 109.47101 * 2 1 4 4 C 1.47012 * 110.99597 * 293.63301 * 3 2 1 5 5 C 1.53104 * 109.25916 * 177.60676 * 4 3 2 6 6 O 1.43018 * 109.25626 * 56.84734 * 5 4 3 7 7 C 1.43020 * 113.73797 * 301.33620 * 6 5 4 8 8 H 1.09001 * 109.53641 * 298.71015 * 7 6 5 9 9 C 1.50701 * 109.50665 * 178.60749 * 7 6 5 10 10 O 1.21282 * 119.99680 * 355.20929 * 9 7 6 11 11 N 1.34776 * 120.00116 * 175.21536 * 9 7 6 12 12 C 1.46492 * 120.00054 * 179.97438 * 11 9 7 13 13 C 1.53002 * 109.47374 * 179.97438 * 12 11 9 14 14 C 1.52995 * 109.47298 * 180.02562 * 13 12 11 15 15 C 1.52998 * 109.47183 * 184.33249 * 14 13 12 16 16 H 1.09005 * 109.99406 * 303.76896 * 15 14 13 17 17 C 1.54318 * 109.88441 * 64.86484 * 15 14 13 18 18 C 1.55160 * 102.94344 * 141.61416 * 17 15 14 19 19 C 1.54906 * 101.57912 * 324.49867 * 18 17 15 20 20 N 1.47020 * 109.88291 * 182.67582 * 15 14 13 21 21 C 1.36942 * 125.65021 * 61.59415 * 20 15 14 22 22 H 1.08000 * 119.99751 * 12.03595 * 21 20 15 23 23 C 1.38813 * 119.99645 * 192.03610 * 21 20 15 24 24 N 1.31617 * 120.00435 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99394 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47044 * 90.00012 * 25 23 21 27 27 H 1.48507 * 109.46891 * 210.00070 * 25 23 21 28 28 H 1.48500 * 109.47305 * 329.99593 * 25 23 21 29 29 C 1.47012 * 110.99986 * 169.99872 * 3 2 1 30 30 H 1.08995 * 109.46830 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47084 * 300.00395 * 1 2 3 32 32 H 1.09004 * 109.46650 * 60.00413 * 1 2 3 33 33 H 1.09002 * 109.47543 * 240.00168 * 2 1 3 34 34 H 1.08998 * 109.47301 * 119.99377 * 2 1 3 35 35 H 1.09002 * 109.51115 * 297.53793 * 4 3 2 36 36 H 1.09003 * 109.50829 * 57.67276 * 4 3 2 37 37 H 1.08992 * 109.50745 * 176.78093 * 5 4 3 38 38 H 1.09000 * 109.50524 * 296.87605 * 5 4 3 39 39 H 0.96997 * 119.99717 * 359.97438 * 11 9 7 40 40 H 1.09007 * 109.47520 * 59.99813 * 12 11 9 41 41 H 1.09003 * 109.47341 * 299.99921 * 12 11 9 42 42 H 1.08996 * 109.46666 * 60.00024 * 13 12 11 43 43 H 1.09004 * 109.46502 * 300.00054 * 13 12 11 44 44 H 1.08998 * 109.47784 * 64.32436 * 14 13 12 45 45 H 1.09003 * 109.47187 * 304.32635 * 14 13 12 46 46 H 1.09002 * 110.72288 * 259.97512 * 17 15 14 47 47 H 1.08992 * 110.72342 * 23.06933 * 17 15 14 48 48 H 1.08999 * 111.00583 * 82.57067 * 18 17 15 49 49 H 1.08998 * 111.00366 * 206.38403 * 18 17 15 50 50 H 1.08997 * 110.36848 * 155.85085 * 19 18 17 51 51 H 1.09003 * 110.36594 * 278.17232 * 19 18 17 52 52 H 0.96995 * 120.00018 * 180.02562 * 24 23 21 53 53 H 1.09003 * 109.50688 * 62.45669 * 29 3 2 54 54 H 1.08997 * 109.54293 * 302.34572 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.6765 2.0651 -1.2574 5 6 2.1515 3.5191 -1.1911 6 8 3.5570 3.5446 -0.9278 7 6 3.9266 2.8915 0.2897 8 1 3.4494 3.3928 1.1317 9 6 5.4236 2.9448 0.4549 10 8 6.1147 3.4105 -0.4262 11 7 5.9943 2.4750 1.5819 12 6 7.4495 2.5263 1.7423 13 6 7.8342 1.9349 3.0999 14 6 9.3540 1.9892 3.2677 15 6 9.7475 1.3008 4.5762 16 1 9.2234 1.7630 5.4128 17 6 9.4001 -0.2010 4.5044 18 6 10.5946 -0.8694 5.2351 19 6 11.7705 0.0446 4.8090 20 7 11.2002 1.4037 4.7781 21 6 11.9066 2.5690 4.9139 22 1 11.3849 3.5014 5.0712 23 6 13.2931 2.5515 4.8496 24 7 13.9288 1.4152 4.6575 25 14 14.2566 4.1412 5.0342 26 1 14.5737 4.3642 6.4677 27 1 15.5185 4.0484 4.2566 28 1 13.4437 5.2748 4.5248 29 6 3.4696 1.4312 0.2384 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5137 0.8900 35 1 2.1663 1.5599 -2.0899 36 1 0.5963 2.0413 -1.4011 37 1 1.9505 4.0114 -2.1425 38 1 1.6216 4.0390 -0.3930 39 1 5.4415 2.1029 2.2867 40 1 7.7847 3.5623 1.6895 41 1 7.9233 1.9504 0.9473 42 1 7.4992 0.8991 3.1530 43 1 7.3605 2.5114 3.8946 44 1 9.6801 3.0289 3.2917 45 1 9.8304 1.4782 2.4309 46 1 8.4654 -0.4061 5.0262 47 1 9.3429 -0.5345 3.4683 48 1 10.4538 -0.8467 6.3157 49 1 10.7455 -1.8903 4.8842 50 1 12.5782 -0.0113 5.5388 51 1 12.1315 -0.2378 3.8201 52 1 14.8977 1.4030 4.6128 53 1 3.9880 0.9158 -0.5702 54 1 3.6990 0.9446 1.1863 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731760419.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:57 Heat of formation + Delta-G solvation = -84.225747 kcal Electronic energy + Delta-G solvation = -29849.800393 eV Core-core repulsion = 25820.904494 eV Total energy + Delta-G solvation = -4028.895899 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.47141 -39.94768 -39.42150 -37.24355 -36.62616 -34.73443 -33.87157 -32.60275 -31.82182 -31.23082 -29.62624 -27.94075 -26.60810 -25.72872 -25.20449 -23.47612 -22.71212 -21.85503 -21.68824 -21.36425 -20.66452 -18.75506 -18.46640 -17.85760 -17.20330 -16.93978 -16.88442 -16.53215 -16.31535 -16.08652 -15.95516 -15.72386 -15.51803 -15.12585 -15.07883 -14.58608 -14.28688 -13.92336 -13.88878 -13.68111 -13.56897 -13.17806 -13.02628 -13.00077 -12.87107 -12.75906 -12.71676 -12.61451 -12.49353 -12.21773 -12.00474 -11.87142 -11.79372 -11.77544 -11.65209 -11.50376 -11.29921 -11.12250 -10.88483 -10.75444 -10.64564 -10.18623 -9.51143 -8.78167 -7.83164 -5.18696 1.43407 1.44286 1.45833 1.54169 1.75598 2.50332 2.64762 3.00646 3.34299 3.60300 3.67680 3.73317 3.88478 3.94003 3.96393 4.01718 4.05435 4.19461 4.24610 4.27196 4.30204 4.36571 4.44783 4.48630 4.50226 4.61027 4.63823 4.65942 4.72853 4.78254 4.84286 4.86107 4.88007 5.00777 5.01764 5.05333 5.09603 5.15789 5.25405 5.31763 5.36622 5.38401 5.52266 5.53780 5.70465 5.72843 5.81992 5.82272 5.91927 5.99107 6.29284 6.49540 7.14221 7.15355 7.84497 8.50579 9.27292 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.018075 B = 0.001929 C = 0.001777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.728182 B =14510.560871 C =15756.279554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.047 3.953 3 N -0.535 5.535 4 C 0.013 3.987 5 C 0.058 3.942 6 O -0.393 6.393 7 C 0.084 3.916 8 H 0.116 0.884 9 C 0.514 3.486 10 O -0.576 6.576 11 N -0.705 5.705 12 C 0.125 3.875 13 C -0.107 4.107 14 C -0.113 4.113 15 C 0.151 3.849 16 H 0.038 0.962 17 C -0.111 4.111 18 C -0.138 4.138 19 C 0.172 3.828 20 N -0.620 5.620 21 C -0.227 4.227 22 H 0.077 0.923 23 C -0.070 4.070 24 N -0.951 5.951 25 Si 0.971 3.029 26 H -0.285 1.285 27 H -0.297 1.297 28 H -0.271 1.271 29 C 0.035 3.965 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.030 0.970 34 H 0.087 0.913 35 H 0.032 0.968 36 H 0.112 0.888 37 H 0.115 0.885 38 H 0.074 0.926 39 H 0.420 0.580 40 H 0.049 0.951 41 H 0.053 0.947 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.036 0.964 45 H 0.039 0.961 46 H 0.099 0.901 47 H 0.070 0.930 48 H 0.064 0.936 49 H 0.080 0.920 50 H 0.035 0.965 51 H -0.012 1.012 52 H 0.245 0.755 53 H 0.031 0.969 54 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.163 -4.417 -6.646 33.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.081 4.081 3 N -0.261 5.261 4 C -0.115 4.115 5 C -0.018 4.018 6 O -0.311 6.311 7 C 0.023 3.977 8 H 0.133 0.867 9 C 0.300 3.700 10 O -0.454 6.454 11 N -0.359 5.359 12 C 0.001 3.999 13 C -0.145 4.145 14 C -0.153 4.153 15 C 0.045 3.955 16 H 0.055 0.945 17 C -0.149 4.149 18 C -0.176 4.176 19 C 0.047 3.953 20 N -0.344 5.344 21 C -0.357 4.357 22 H 0.095 0.905 23 C -0.262 4.262 24 N -0.600 5.600 25 Si 0.800 3.200 26 H -0.212 1.212 27 H -0.224 1.224 28 H -0.196 1.196 29 C -0.094 4.094 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.049 0.951 34 H 0.106 0.894 35 H 0.051 0.949 36 H 0.130 0.870 37 H 0.133 0.867 38 H 0.093 0.907 39 H 0.258 0.742 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.112 0.888 43 H 0.103 0.897 44 H 0.055 0.945 45 H 0.058 0.942 46 H 0.117 0.883 47 H 0.089 0.911 48 H 0.082 0.918 49 H 0.098 0.902 50 H 0.053 0.947 51 H 0.006 0.994 52 H 0.054 0.946 53 H 0.049 0.951 54 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -31.567 -3.683 -7.005 32.544 hybrid contribution 1.576 0.293 -0.503 1.680 sum -29.991 -3.389 -7.508 31.102 Atomic orbital electron populations 1.21767 0.93422 1.02490 1.02536 1.22211 0.97202 0.87190 1.01455 1.62329 1.11863 1.17575 1.34303 1.22916 1.03095 0.95114 0.90332 1.22978 0.79618 0.95931 1.03316 1.88101 1.25700 1.77138 1.40180 1.21962 0.90606 0.94902 0.90273 0.86661 1.20664 0.90209 0.77260 0.81909 1.90727 1.65462 1.46352 1.42853 1.45756 1.08252 1.62613 1.19246 1.21289 0.79519 1.00647 0.98404 1.21641 0.94995 1.02839 0.95052 1.21824 0.95087 0.99992 0.98414 1.21217 0.84018 0.95642 0.94573 0.94460 1.22587 0.98319 0.93167 1.00782 1.22881 0.96076 0.98633 1.00009 1.21260 0.94000 0.83659 0.96430 1.44877 1.03175 1.02069 1.84296 1.19318 0.89053 0.86974 1.40337 0.90484 1.25649 0.97791 0.99918 1.02884 1.70154 1.06812 1.25414 1.57637 0.85183 0.77926 0.79614 0.77298 1.21204 1.22414 1.19602 1.22633 0.89055 0.94340 1.03388 0.91121 0.91763 0.92521 0.95124 0.89443 0.94930 0.87007 0.86712 0.90747 0.74165 0.93288 0.92893 0.88805 0.89749 0.94507 0.94198 0.88296 0.91094 0.91767 0.90192 0.94703 0.99436 0.94603 0.95081 0.86478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.85 71.98 0.71 -0.23 16 2 C 0.05 0.42 5.68 86.30 0.49 0.91 16 3 N -0.54 -6.29 4.73 -895.19 -4.23 -10.52 16 4 C 0.01 0.16 5.44 86.32 0.47 0.63 16 5 C 0.06 0.79 7.01 72.02 0.50 1.30 16 6 O -0.39 -9.02 10.01 -130.02 -1.30 -10.32 16 7 C 0.08 1.53 3.22 29.88 0.10 1.62 16 8 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 9 C 0.51 12.76 7.18 87.66 0.63 13.39 16 10 O -0.58 -21.04 16.51 15.93 0.26 -20.78 16 11 N -0.70 -13.28 5.52 -463.06 -2.56 -15.83 16 12 C 0.13 3.07 5.67 86.38 0.49 3.56 16 13 C -0.11 -2.36 5.22 30.59 0.16 -2.20 16 14 C -0.11 -3.84 4.68 30.59 0.14 -3.70 16 15 C 0.15 5.69 3.19 45.34 0.14 5.83 16 16 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 17 C -0.11 -3.29 5.43 31.78 0.17 -3.12 16 18 C -0.14 -4.85 7.09 31.99 0.23 -4.62 16 19 C 0.17 8.51 5.46 86.85 0.47 8.98 16 20 N -0.62 -31.33 3.13 -668.27 -2.09 -33.42 16 21 C -0.23 -12.75 9.77 84.03 0.82 -11.93 16 22 H 0.08 4.17 7.83 -2.91 -0.02 4.14 16 23 C -0.07 -4.04 5.47 84.86 0.46 -3.58 16 24 N -0.95 -58.37 10.48 21.65 0.23 -58.14 16 25 Si 0.97 46.93 29.55 68.60 2.03 48.95 16 26 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 27 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 28 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 29 C 0.03 0.48 4.88 86.31 0.42 0.90 16 30 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.06 0.35 6.52 -2.38 -0.02 0.34 16 33 H 0.03 0.32 8.12 -2.39 -0.02 0.30 16 34 H 0.09 0.65 8.04 -2.39 -0.02 0.63 16 35 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.11 0.84 6.38 -2.39 -0.02 0.82 16 37 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.42 4.43 8.34 -92.71 -0.77 3.65 16 40 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 41 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.09 1.63 7.25 -2.39 -0.02 1.61 16 43 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.04 1.43 7.91 -2.39 -0.02 1.41 16 45 H 0.04 1.50 8.08 -2.39 -0.02 1.48 16 46 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 47 H 0.07 2.00 7.78 -2.39 -0.02 1.98 16 48 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 49 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 50 H 0.03 1.97 6.74 -2.39 -0.02 1.95 16 51 H -0.01 -0.68 8.11 -2.39 -0.02 -0.70 16 52 H 0.24 14.67 8.31 -92.71 -0.77 13.90 16 53 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 54 H 0.12 1.01 7.95 -2.39 -0.02 0.99 16 Total: -1.00 -79.21 417.82 -1.16 -80.37 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: 0.08 Total: 11.96 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: 6.42 Total: 7.74 kcal Atomic # 7 Polarization: -109.27 SS G_CDS: -8.65 Total: -117.92 kcal Atomic # 8 Polarization: -30.06 SS G_CDS: -1.04 Total: -31.10 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.95 kcal Total: -79.21 -1.16 -80.37 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731760419.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.858 kcal (2) G-P(sol) polarization free energy of solvation -79.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds