Wall clock time and date at job start Sat Apr 11 2020 05:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 109.47708 * 2 1 4 4 C 1.46505 * 120.00411 * 270.01060 * 3 2 1 5 5 C 1.53008 * 109.46681 * 269.99610 * 4 3 2 6 6 C 1.34776 * 119.99706 * 90.00106 * 3 2 1 7 7 O 1.21286 * 120.00138 * 0.02562 * 6 3 2 8 8 C 1.50704 * 120.00144 * 180.02562 * 6 3 2 9 9 C 1.52997 * 109.47315 * 180.02562 * 8 6 3 10 10 C 1.52998 * 109.47109 * 180.02562 * 9 8 6 11 11 C 1.50699 * 109.47033 * 180.02562 * 10 9 8 12 12 O 1.21279 * 120.00285 * 359.97438 * 11 10 9 13 13 N 1.34782 * 120.00055 * 180.02562 * 11 10 9 14 14 C 1.47429 * 125.64714 * 4.90353 * 13 11 10 15 15 C 1.54911 * 104.83138 * 204.15335 * 14 13 11 16 16 C 1.55153 * 101.58143 * 322.99254 * 15 14 13 17 17 C 1.47015 * 125.64775 * 184.93539 * 13 11 10 18 18 H 1.08992 * 110.01622 * 59.42758 * 17 13 11 19 19 C 1.52999 * 109.88238 * 298.32833 * 17 13 11 20 20 N 1.46499 * 109.47216 * 177.07487 * 19 17 13 21 21 C 1.36940 * 119.99882 * 174.92084 * 20 19 17 22 22 H 1.08002 * 120.00139 * 359.97438 * 21 20 19 23 23 C 1.38814 * 119.99837 * 180.02562 * 21 20 19 24 24 N 1.31619 * 119.99987 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 119.99790 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47187 * 269.99934 * 25 23 21 27 27 H 1.48506 * 109.47154 * 149.99955 * 25 23 21 28 28 H 1.48502 * 109.47167 * 30.00220 * 25 23 21 29 29 H 1.09002 * 109.46618 * 299.99680 * 1 2 3 30 30 H 1.09003 * 109.47273 * 59.98892 * 1 2 3 31 31 H 1.08990 * 109.47665 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46618 * 240.00320 * 2 1 3 33 33 H 1.09003 * 109.47273 * 120.01108 * 2 1 3 34 34 H 1.08993 * 109.46877 * 29.99038 * 4 3 2 35 35 H 1.08992 * 109.47047 * 149.99669 * 4 3 2 36 36 H 1.09001 * 109.46987 * 59.99728 * 5 4 3 37 37 H 1.08992 * 109.47111 * 179.97438 * 5 4 3 38 38 H 1.08995 * 109.46787 * 300.00106 * 5 4 3 39 39 H 1.09007 * 109.46886 * 60.00315 * 8 6 3 40 40 H 1.08992 * 109.47023 * 300.00678 * 8 6 3 41 41 H 1.08993 * 109.47023 * 60.00042 * 9 8 6 42 42 H 1.09005 * 109.47137 * 300.00305 * 9 8 6 43 43 H 1.09000 * 109.47413 * 59.99500 * 10 9 8 44 44 H 1.09005 * 109.47008 * 299.99940 * 10 9 8 45 45 H 1.08994 * 110.36885 * 85.31155 * 14 13 11 46 46 H 1.09001 * 110.36201 * 322.99162 * 14 13 11 47 47 H 1.08999 * 111.00268 * 204.91447 * 15 14 13 48 48 H 1.09006 * 111.00005 * 81.06603 * 15 14 13 49 49 H 1.09003 * 110.71566 * 277.13719 * 16 15 14 50 50 H 1.08996 * 110.72148 * 153.86641 * 16 15 14 51 51 H 1.09003 * 109.47127 * 57.07724 * 19 17 13 52 52 H 1.09005 * 109.47425 * 297.07901 * 19 17 13 53 53 H 0.97002 * 120.00248 * 354.92002 * 20 19 17 54 54 H 0.96998 * 119.99910 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.7076 1.8314 -1.7105 6 6 2.2432 2.0164 1.1672 7 8 2.0414 1.4444 2.2176 8 6 2.7451 3.4374 1.1673 9 6 2.9159 3.9178 2.6098 10 6 3.4249 5.3607 2.6099 11 6 3.5937 5.8337 4.0307 12 8 3.3322 5.0903 4.9525 13 7 4.0343 7.0834 4.2771 14 6 4.2895 8.1205 3.2608 15 6 5.3171 9.0753 3.9179 16 6 4.8350 9.0846 5.3926 17 6 4.3406 7.6379 5.6038 18 1 5.1197 7.0465 6.0845 19 6 3.0798 7.6403 6.4705 20 7 3.4100 8.1290 7.8115 21 6 2.4168 8.3182 8.7351 22 1 1.3900 8.1076 8.4748 23 6 2.7297 8.7817 10.0056 24 7 3.9808 9.0398 10.3224 25 14 1.3748 9.0405 11.2652 26 1 0.8567 10.4280 11.1570 27 1 1.9185 8.8201 12.6295 28 1 0.2720 8.0790 11.0107 29 1 -0.3632 0.5138 0.8901 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3634 -1.0275 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5140 0.8899 34 1 1.5817 1.6878 -2.0283 35 1 2.0956 3.1410 -1.1382 36 1 3.8744 0.7621 -1.8409 37 1 3.8891 2.3449 -2.6546 38 1 4.3884 2.2153 -0.9509 39 1 2.0267 4.0765 0.6538 40 1 3.7051 3.4836 0.6532 41 1 3.6343 3.2787 3.1230 42 1 1.9560 3.8715 3.1243 43 1 2.7061 5.9996 2.0968 44 1 4.3847 5.4074 2.0953 45 1 3.3698 8.6562 3.0262 46 1 4.7093 7.6733 2.3597 47 1 5.2587 10.0724 3.4815 48 1 6.3280 8.6750 3.8398 49 1 4.0189 9.7946 5.5271 50 1 5.6606 9.3122 6.0669 51 1 2.6849 6.6267 6.5402 52 1 2.3307 8.2919 6.0206 53 1 4.3322 8.3185 8.0453 54 1 4.6843 8.9058 9.6682 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733348881.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:06 Heat of formation + Delta-G solvation = -99.545570 kcal Electronic energy + Delta-G solvation = -29815.767295 eV Core-core repulsion = 25786.207078 eV Total energy + Delta-G solvation = -4029.560216 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -41.38526 -40.99155 -38.82633 -37.26944 -36.78366 -35.42384 -33.60838 -33.04230 -32.57531 -30.71867 -30.23972 -29.02782 -26.55454 -25.42609 -24.62639 -24.38763 -23.55719 -22.59054 -21.65263 -20.21932 -19.82939 -19.30096 -18.15508 -18.03852 -17.67499 -17.32828 -16.99103 -16.61815 -16.10527 -15.78308 -15.61102 -15.30966 -15.10543 -14.92829 -14.86981 -14.75870 -14.52621 -14.22406 -13.81488 -13.71367 -13.58414 -13.46785 -13.18354 -13.07806 -12.89678 -12.82203 -12.75522 -12.65707 -12.59799 -12.36856 -12.07489 -12.02627 -11.97669 -11.92377 -11.91868 -11.72026 -11.65739 -11.37158 -11.07422 -10.90427 -10.72876 -9.71551 -9.70609 -9.20107 -8.49037 -5.42486 1.52531 1.62025 1.63709 1.64819 1.79619 1.86823 2.09843 2.65888 3.30713 3.41640 3.52519 3.60318 3.76194 3.83111 3.91612 3.99316 4.00289 4.07959 4.14353 4.22843 4.23142 4.26074 4.44094 4.46534 4.47513 4.51385 4.54525 4.59547 4.64976 4.66589 4.71864 4.75840 4.81824 4.88557 4.95492 4.95962 5.02197 5.04486 5.05682 5.11084 5.12482 5.23348 5.30184 5.34044 5.40101 5.43235 5.49378 5.65122 6.40695 6.41418 6.57112 6.99673 7.19052 7.20961 7.88905 8.01479 9.02879 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014479 B = 0.002040 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.372642 B =13722.613769 C =15287.404733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.105 3.895 3 N -0.613 5.613 4 C 0.097 3.903 5 C -0.171 4.171 6 C 0.500 3.500 7 O -0.596 6.596 8 C -0.125 4.125 9 C -0.088 4.088 10 C -0.115 4.115 11 C 0.507 3.493 12 O -0.595 6.595 13 N -0.614 5.614 14 C 0.095 3.905 15 C -0.119 4.119 16 C -0.119 4.119 17 C 0.135 3.865 18 H 0.046 0.954 19 C 0.158 3.842 20 N -0.748 5.748 21 C -0.340 4.340 22 H 0.056 0.944 23 C -0.101 4.101 24 N -0.968 5.968 25 Si 1.133 2.867 26 H -0.275 1.275 27 H -0.287 1.287 28 H -0.281 1.281 29 H 0.028 0.972 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.104 0.896 33 H 0.052 0.948 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.049 0.951 37 H 0.089 0.911 38 H 0.053 0.947 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.040 0.960 42 H 0.037 0.963 43 H 0.130 0.870 44 H 0.135 0.865 45 H 0.082 0.918 46 H 0.122 0.878 47 H 0.113 0.887 48 H 0.087 0.913 49 H 0.066 0.934 50 H 0.073 0.927 51 H -0.003 1.003 52 H 0.018 0.982 53 H 0.363 0.637 54 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.861 -8.447 -37.954 38.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.017 4.017 3 N -0.346 5.346 4 C -0.025 4.025 5 C -0.229 4.229 6 C 0.290 3.710 7 O -0.477 6.477 8 C -0.164 4.164 9 C -0.126 4.126 10 C -0.154 4.154 11 C 0.298 3.702 12 O -0.475 6.475 13 N -0.348 5.348 14 C -0.026 4.026 15 C -0.156 4.156 16 C -0.157 4.157 17 C 0.030 3.970 18 H 0.064 0.936 19 C 0.030 3.970 20 N -0.393 5.393 21 C -0.471 4.471 22 H 0.074 0.926 23 C -0.292 4.292 24 N -0.615 5.615 25 Si 0.957 3.043 26 H -0.201 1.201 27 H -0.213 1.213 28 H -0.207 1.207 29 H 0.047 0.953 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.122 0.878 33 H 0.071 0.929 34 H 0.115 0.885 35 H 0.120 0.880 36 H 0.069 0.931 37 H 0.108 0.892 38 H 0.072 0.928 39 H 0.147 0.853 40 H 0.147 0.853 41 H 0.059 0.941 42 H 0.056 0.944 43 H 0.148 0.852 44 H 0.153 0.847 45 H 0.100 0.900 46 H 0.140 0.860 47 H 0.131 0.869 48 H 0.105 0.895 49 H 0.085 0.915 50 H 0.092 0.908 51 H 0.015 0.985 52 H 0.036 0.964 53 H 0.195 0.805 54 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 0.020 -8.806 -35.533 36.608 hybrid contribution 0.480 -0.980 -0.359 1.149 sum 0.500 -9.786 -35.893 37.206 Atomic orbital electron populations 1.22068 0.95536 1.02804 1.01530 1.21465 0.94697 0.82610 1.02957 1.48253 1.65165 1.14422 1.06725 1.21921 0.97823 0.98844 0.83888 1.22211 0.95867 1.02277 1.02526 1.21432 0.76598 0.90010 0.82998 1.90733 1.54050 1.69444 1.33435 1.21732 1.05430 0.91580 0.97693 1.20961 1.00797 0.94765 0.96109 1.21682 1.06412 0.96885 0.90428 1.21556 0.75440 0.79761 0.93461 1.90761 1.51765 1.55960 1.49027 1.48748 1.65788 1.12456 1.07856 1.22728 0.99821 0.88389 0.91622 1.22828 0.99151 1.01456 0.92214 1.22570 1.01045 0.92623 0.99494 1.21511 0.94979 0.96073 0.84444 0.93619 1.20889 0.95946 0.95100 0.85034 1.42343 1.06155 1.80663 1.10165 1.20352 0.89735 1.41342 0.95712 0.92570 1.27345 1.03110 0.99333 0.99399 1.70957 0.99913 1.53672 1.36963 0.82566 0.71423 0.76974 0.73328 1.20129 1.21340 1.20697 0.95309 0.90850 0.90536 0.87781 0.92913 0.88528 0.88027 0.93143 0.89238 0.92839 0.85276 0.85341 0.94080 0.94434 0.85234 0.84700 0.90026 0.86012 0.86906 0.89471 0.91522 0.90839 0.98525 0.96381 0.80469 0.94555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 10.24 71.98 0.74 -1.39 16 2 C 0.11 1.46 6.13 86.38 0.53 1.99 16 3 N -0.61 -8.31 2.47 -821.80 -2.03 -10.34 16 4 C 0.10 0.40 5.93 86.38 0.51 0.92 16 5 C -0.17 -0.56 10.24 71.98 0.74 0.18 16 6 C 0.50 10.51 7.67 87.66 0.67 11.18 16 7 O -0.60 -20.07 15.56 -3.05 -0.05 -20.12 16 8 C -0.13 -1.62 4.25 29.85 0.13 -1.49 16 9 C -0.09 -2.03 3.79 30.59 0.12 -1.91 16 10 C -0.11 -1.96 4.63 29.85 0.14 -1.82 16 11 C 0.51 16.03 7.67 87.66 0.67 16.70 16 12 O -0.59 -27.17 14.80 -3.03 -0.04 -27.22 16 13 N -0.61 -17.61 3.06 -788.06 -2.42 -20.03 16 14 C 0.10 1.50 6.74 86.85 0.59 2.09 16 15 C -0.12 -1.98 7.08 31.99 0.23 -1.75 16 16 C -0.12 -3.48 6.13 31.78 0.19 -3.29 16 17 C 0.13 5.02 2.97 45.34 0.13 5.16 16 18 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 19 C 0.16 7.76 5.63 86.38 0.49 8.24 16 20 N -0.75 -42.72 5.38 -343.44 -1.85 -44.57 16 21 C -0.34 -21.30 9.99 84.03 0.84 -20.46 16 22 H 0.06 3.52 7.83 -2.91 -0.02 3.50 16 23 C -0.10 -6.26 5.50 84.86 0.47 -5.79 16 24 N -0.97 -63.41 13.70 21.65 0.30 -63.11 16 25 Si 1.13 55.54 29.92 68.60 2.05 57.60 16 26 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 27 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 28 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 29 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.10 0.80 8.07 -2.39 -0.02 0.78 16 33 H 0.05 1.06 7.42 -2.39 -0.02 1.04 16 34 H 0.10 0.12 8.07 -2.39 -0.02 0.10 16 35 H 0.10 0.05 6.44 -2.39 -0.02 0.04 16 36 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 37 H 0.09 -0.04 8.14 -2.39 -0.02 -0.05 16 38 H 0.05 0.26 7.22 -2.39 -0.02 0.25 16 39 H 0.13 0.78 7.40 -2.38 -0.02 0.77 16 40 H 0.13 0.79 7.19 -2.39 -0.02 0.77 16 41 H 0.04 1.24 8.06 -2.39 -0.02 1.22 16 42 H 0.04 1.16 8.06 -2.38 -0.02 1.14 16 43 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.14 1.19 7.95 -2.38 -0.02 1.17 16 45 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.12 0.85 7.47 -2.39 -0.02 0.84 16 47 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 48 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 49 H 0.07 2.16 7.80 -2.39 -0.02 2.14 16 50 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 51 H 0.00 -0.18 6.61 -2.39 -0.02 -0.20 16 52 H 0.02 0.89 8.07 -2.38 -0.02 0.87 16 53 H 0.36 20.80 6.38 -92.71 -0.59 20.20 16 54 H 0.24 15.94 6.77 -92.71 -0.63 15.31 16 Total: -1.00 -99.02 427.18 3.55 -95.47 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: 0.41 Total: 23.76 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: 7.18 Total: 8.56 kcal Atomic # 7 Polarization: -132.06 SS G_CDS: -6.00 Total: -138.05 kcal Atomic # 8 Polarization: -47.24 SS G_CDS: -0.09 Total: -47.34 kcal Atomic # 14 Polarization: 55.54 SS G_CDS: 2.05 Total: 57.60 kcal Total: -99.02 3.55 -95.47 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733348881.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.075 kcal (2) G-P(sol) polarization free energy of solvation -99.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds