Wall clock time and date at job start Sat Apr 11 2020 05:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46903 * 109.47041 * 2 1 4 4 C 1.47014 * 110.99939 * 284.86179 * 3 2 1 5 5 C 1.53093 * 109.26087 * 177.60875 * 4 3 2 6 6 O 1.43018 * 109.25924 * 56.84500 * 5 4 3 7 7 C 1.43011 * 113.73827 * 301.32994 * 6 5 4 8 8 C 1.47010 * 111.00164 * 161.22626 * 3 2 1 9 9 H 1.09001 * 109.51108 * 62.45552 * 8 3 2 10 10 C 1.50702 * 109.50456 * 302.36651 * 8 3 2 11 11 O 1.21275 * 120.00475 * 331.12517 * 10 8 3 12 12 N 1.34780 * 119.99881 * 151.12433 * 10 8 3 13 13 C 1.46496 * 120.00161 * 185.00002 * 12 10 8 14 14 H 1.08999 * 109.47287 * 33.32376 * 13 12 10 15 15 C 1.53001 * 109.47562 * 153.32489 * 13 12 10 16 16 N 1.46500 * 109.47026 * 303.24035 * 15 13 12 17 17 C 1.36939 * 120.00041 * 179.97438 * 16 15 13 18 18 H 1.07997 * 119.99503 * 0.02562 * 17 16 15 19 19 C 1.38806 * 120.00220 * 179.97438 * 17 16 15 20 20 N 1.31622 * 120.00029 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00337 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46851 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46986 * 119.99984 * 21 19 17 24 24 H 1.48491 * 109.47548 * 240.00375 * 21 19 17 25 25 C 1.53004 * 109.47099 * 273.32672 * 13 12 10 26 26 C 1.54260 * 110.03201 * 299.10438 * 25 13 12 27 27 C 1.54963 * 104.16169 * 217.13534 * 26 25 13 28 28 C 1.54895 * 102.77640 * 37.88797 * 27 26 25 29 29 C 1.53871 * 110.03349 * 181.88510 * 25 13 12 30 30 H 1.08999 * 109.47196 * 60.00340 * 1 2 3 31 31 H 1.09004 * 109.46987 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47395 * 300.00327 * 1 2 3 33 33 H 1.08992 * 109.47280 * 239.99981 * 2 1 3 34 34 H 1.08999 * 109.47196 * 119.99660 * 2 1 3 35 35 H 1.08998 * 109.51179 * 57.66923 * 4 3 2 36 36 H 1.09000 * 109.50492 * 297.54216 * 4 3 2 37 37 H 1.09000 * 109.51071 * 176.78041 * 5 4 3 38 38 H 1.09006 * 109.50617 * 296.91275 * 5 4 3 39 39 H 1.09001 * 109.51287 * 298.73845 * 7 6 5 40 40 H 1.09004 * 109.54580 * 178.62333 * 7 6 5 41 41 H 0.96998 * 119.99847 * 4.99760 * 12 10 8 42 42 H 1.09002 * 109.46612 * 63.23652 * 15 13 12 43 43 H 1.08996 * 109.47414 * 183.23535 * 15 13 12 44 44 H 0.97002 * 119.99897 * 359.97438 * 16 15 13 45 45 H 0.96997 * 120.00620 * 179.97438 * 20 19 17 46 46 H 1.08997 * 110.01249 * 60.49727 * 25 13 12 47 47 H 1.09005 * 110.48695 * 335.78387 * 26 25 13 48 48 H 1.08997 * 110.48871 * 98.42252 * 26 25 13 49 49 H 1.08999 * 110.72362 * 279.57581 * 27 26 25 50 50 H 1.08996 * 110.92554 * 156.29392 * 27 26 25 51 51 H 1.08995 * 110.48457 * 203.40806 * 28 27 26 52 52 H 1.08997 * 110.59665 * 80.81488 * 28 27 26 53 53 H 1.08992 * 110.03543 * 238.57223 * 29 25 13 54 54 H 1.09004 * 110.03008 * 359.97438 * 29 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8633 1.9991 -1.3266 5 6 2.3292 3.4562 -1.2667 6 8 3.6823 3.5003 -0.8056 7 6 3.8706 2.9114 0.4839 8 6 3.4203 1.4486 0.4417 9 1 4.0478 0.8947 -0.2566 10 6 3.5424 0.8438 1.8166 11 8 2.6021 0.8820 2.5816 12 7 4.6965 0.2603 2.1961 13 6 4.7811 -0.4236 3.4889 14 1 3.8183 -0.8774 3.7236 15 6 5.8547 -1.5116 3.4212 16 7 5.5446 -2.4362 2.3280 17 6 6.3713 -3.4979 2.0740 18 1 7.2517 -3.6538 2.6798 19 6 6.0772 -4.3744 1.0386 20 7 5.0040 -4.1847 0.3006 21 14 7.2045 -5.8231 0.6924 22 1 8.3333 -5.8134 1.6573 23 1 6.4418 -7.0892 0.8362 24 1 7.7343 -5.7187 -0.6908 25 6 5.1474 0.5873 4.5775 26 6 6.5194 1.2215 4.2697 27 6 7.1831 1.3830 5.6607 28 6 6.7380 0.0989 6.4037 29 6 5.2859 -0.1259 5.9340 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 0.8149 1.9640 -1.6227 36 1 2.4658 1.4540 -2.0532 37 1 2.2688 3.8988 -2.2609 38 1 1.6923 4.0139 -0.5800 39 1 3.2786 3.4532 1.2216 40 1 4.9248 2.9599 0.7566 41 1 5.4711 0.2931 1.6132 42 1 6.8270 -1.0519 3.2435 43 1 5.8781 -2.0582 4.3639 44 1 4.7536 -2.2964 1.7842 45 1 4.7986 -4.7969 -0.4232 46 1 4.3832 1.3621 4.6394 47 1 7.1127 0.5597 3.6386 48 1 6.3921 2.1928 3.7918 49 1 6.8069 2.2721 6.1666 50 1 8.2688 1.4212 5.5719 51 1 6.7706 0.2517 7.4824 52 1 7.3659 -0.7456 6.1197 53 1 4.5897 0.3034 6.6544 54 1 5.0918 -1.1921 5.8168 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733379040.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:15 Heat of formation + Delta-G solvation = -92.864467 kcal Electronic energy + Delta-G solvation = -32160.998730 eV Core-core repulsion = 28131.728228 eV Total energy + Delta-G solvation = -4029.270502 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.73392 -40.38188 -39.06166 -37.10020 -36.69776 -35.21813 -33.35877 -32.53354 -31.90436 -30.84134 -29.52400 -27.91571 -27.61853 -26.04100 -24.95803 -23.44866 -23.10138 -22.34984 -21.38733 -20.98730 -20.08538 -19.17816 -18.47875 -17.75150 -17.51131 -17.28253 -16.57123 -16.31659 -16.21532 -16.17571 -15.93458 -15.52417 -15.29794 -15.16268 -15.08246 -15.01971 -14.49026 -14.37262 -14.08276 -13.86147 -13.51754 -13.22967 -13.08896 -12.95229 -12.82373 -12.77353 -12.64824 -12.41112 -12.20537 -12.08687 -11.95664 -11.89465 -11.86742 -11.82597 -11.76104 -11.60997 -11.38581 -11.20426 -11.00852 -10.90426 -10.57610 -9.97087 -9.50754 -9.00021 -7.95842 -5.24751 1.46295 1.47190 1.51970 1.56749 2.04114 2.54298 2.60950 2.90685 3.38902 3.58998 3.63964 3.69184 3.74991 3.87251 3.89594 3.93108 4.01058 4.08737 4.19559 4.21197 4.32240 4.34293 4.39297 4.49659 4.52659 4.57379 4.62195 4.63296 4.70720 4.72821 4.76215 4.85360 4.87899 4.90365 4.93066 4.94843 5.00212 5.11488 5.15114 5.17802 5.25446 5.30955 5.35815 5.49588 5.49798 5.55916 5.63047 5.72944 5.88726 6.02576 6.24845 6.55213 7.22522 7.32311 8.05546 8.29357 9.27347 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.007327 B = 0.004583 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3820.770866 B = 6107.529879 C = 8674.151562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.050 3.950 3 N -0.519 5.519 4 C 0.015 3.985 5 C 0.061 3.939 6 O -0.389 6.389 7 C 0.087 3.913 8 C 0.033 3.967 9 H 0.063 0.937 10 C 0.525 3.475 11 O -0.556 6.556 12 N -0.704 5.704 13 C 0.158 3.842 14 H 0.052 0.948 15 C 0.148 3.852 16 N -0.742 5.742 17 C -0.239 4.239 18 H 0.078 0.922 19 C -0.072 4.072 20 N -0.968 5.968 21 Si 0.969 3.031 22 H -0.264 1.264 23 H -0.298 1.298 24 H -0.294 1.294 25 C -0.088 4.088 26 C -0.119 4.119 27 C -0.117 4.117 28 C -0.120 4.120 29 C -0.122 4.122 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.030 0.970 34 H 0.045 0.955 35 H 0.110 0.890 36 H 0.039 0.961 37 H 0.127 0.873 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.119 0.881 41 H 0.407 0.593 42 H 0.045 0.955 43 H 0.036 0.964 44 H 0.372 0.628 45 H 0.249 0.751 46 H 0.064 0.936 47 H 0.068 0.932 48 H 0.069 0.931 49 H 0.072 0.928 50 H 0.074 0.926 51 H 0.076 0.924 52 H 0.060 0.940 53 H 0.068 0.932 54 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.699 17.430 2.601 17.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.078 4.078 3 N -0.246 5.246 4 C -0.113 4.113 5 C -0.016 4.016 6 O -0.307 6.307 7 C 0.009 3.991 8 C -0.080 4.080 9 H 0.080 0.920 10 C 0.310 3.690 11 O -0.434 6.434 12 N -0.355 5.355 13 C 0.053 3.947 14 H 0.071 0.929 15 C 0.022 3.978 16 N -0.385 5.385 17 C -0.371 4.371 18 H 0.096 0.904 19 C -0.264 4.264 20 N -0.619 5.619 21 Si 0.799 3.201 22 H -0.189 1.189 23 H -0.225 1.225 24 H -0.221 1.221 25 C -0.108 4.108 26 C -0.156 4.156 27 C -0.154 4.154 28 C -0.158 4.158 29 C -0.160 4.160 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.049 0.951 34 H 0.064 0.936 35 H 0.128 0.872 36 H 0.057 0.943 37 H 0.145 0.855 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.137 0.863 41 H 0.242 0.758 42 H 0.062 0.938 43 H 0.054 0.946 44 H 0.203 0.797 45 H 0.058 0.942 46 H 0.083 0.917 47 H 0.086 0.914 48 H 0.087 0.913 49 H 0.091 0.909 50 H 0.093 0.907 51 H 0.095 0.905 52 H 0.079 0.921 53 H 0.087 0.913 54 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.352 17.679 3.421 18.160 hybrid contribution 0.525 -2.062 -1.232 2.459 sum -1.827 15.617 2.189 15.875 Atomic orbital electron populations 1.21607 0.92714 1.01851 1.02585 1.22078 0.98095 0.87965 0.99613 1.62118 1.16389 1.18800 1.27277 1.23017 1.03589 0.96399 0.88251 1.22916 0.82343 0.94403 1.01922 1.87994 1.28926 1.79536 1.34274 1.22506 1.02695 0.87987 0.85905 1.22323 0.91922 0.99930 0.93791 0.91952 1.20349 0.82259 0.77863 0.88515 1.90661 1.39192 1.58757 1.54760 1.45935 1.13777 1.55003 1.20751 1.21049 0.98412 0.92068 0.83143 0.92929 1.21189 0.95991 0.89475 0.91191 1.42535 1.29485 1.29687 1.36774 1.19633 1.03965 1.02422 1.11039 0.90377 1.25496 0.99576 1.02284 0.99076 1.69828 1.28808 1.40136 1.23082 0.85131 0.78378 0.79161 0.77437 1.18865 1.22535 1.22140 1.21991 0.98442 0.96576 0.93796 1.22492 0.94534 1.00437 0.98184 1.22467 1.00432 0.97707 0.94842 1.22337 0.94959 0.98125 1.00381 1.22219 0.98211 1.00138 0.95450 0.90864 0.92088 0.92648 0.95136 0.93588 0.87229 0.94279 0.85479 0.91573 0.91827 0.86317 0.75796 0.93768 0.94611 0.79656 0.94233 0.91701 0.91386 0.91262 0.90895 0.90687 0.90521 0.92107 0.91289 0.92552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.38 10.01 71.98 0.72 -2.65 16 2 C 0.05 1.59 5.36 86.30 0.46 2.05 16 3 N -0.52 -14.69 4.21 -874.41 -3.68 -18.37 16 4 C 0.01 0.32 5.47 86.31 0.47 0.79 16 5 C 0.06 1.12 7.01 72.01 0.50 1.62 16 6 O -0.39 -9.03 10.83 -148.98 -1.61 -10.65 16 7 C 0.09 2.04 6.28 72.02 0.45 2.49 16 8 C 0.03 0.94 2.38 44.18 0.10 1.05 16 9 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 10 C 0.52 17.43 5.63 87.66 0.49 17.92 16 11 O -0.56 -21.97 15.39 -3.01 -0.05 -22.02 16 12 N -0.70 -22.29 4.22 -442.53 -1.87 -24.16 16 13 C 0.16 5.28 1.81 44.99 0.08 5.36 16 14 H 0.05 2.11 7.60 -2.39 -0.02 2.09 16 15 C 0.15 5.56 5.27 86.38 0.46 6.01 16 16 N -0.74 -36.29 5.45 -343.46 -1.87 -38.16 16 17 C -0.24 -12.88 9.99 84.03 0.84 -12.04 16 18 H 0.08 4.03 7.83 -2.91 -0.02 4.00 16 19 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 20 N -0.97 -58.45 13.06 21.65 0.28 -58.16 16 21 Si 0.97 45.45 29.55 68.60 2.03 47.48 16 22 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 23 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 24 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 25 C -0.09 -2.35 2.97 -10.07 -0.03 -2.38 16 26 C -0.12 -2.66 5.84 31.69 0.19 -2.47 16 27 C -0.12 -2.20 6.91 31.91 0.22 -1.98 16 28 C -0.12 -2.48 6.83 31.67 0.22 -2.27 16 29 C -0.12 -3.01 5.94 31.32 0.19 -2.82 16 30 H 0.07 1.52 6.87 -2.39 -0.02 1.51 16 31 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 32 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 33 H 0.03 0.99 8.00 -2.39 -0.02 0.97 16 34 H 0.05 1.79 5.98 -2.39 -0.01 1.78 16 35 H 0.11 1.93 6.79 -2.39 -0.02 1.91 16 36 H 0.04 0.90 8.13 -2.39 -0.02 0.88 16 37 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 39 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.41 12.16 8.62 -92.71 -0.80 11.36 16 42 H 0.04 1.58 5.93 -2.39 -0.01 1.56 16 43 H 0.04 1.38 6.47 -2.39 -0.02 1.36 16 44 H 0.37 19.91 7.40 -92.71 -0.69 19.23 16 45 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 46 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 47 H 0.07 1.65 5.65 -2.38 -0.01 1.64 16 48 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 49 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 50 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 51 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 52 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 53 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 54 H 0.06 1.57 6.20 -2.38 -0.01 1.56 16 Total: -1.00 -67.66 411.00 -1.53 -69.19 By element: Atomic # 1 Polarization: 48.32 SS G_CDS: -0.59 Total: 47.73 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: 5.83 Total: 7.11 kcal Atomic # 7 Polarization: -131.71 SS G_CDS: -7.14 Total: -138.85 kcal Atomic # 8 Polarization: -31.00 SS G_CDS: -1.66 Total: -32.66 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -67.66 -1.53 -69.19 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733379040.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.673 kcal (2) G-P(sol) polarization free energy of solvation -67.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds