Wall clock time and date at job start Sat Apr 11 2020 05:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46899 * 109.46934 * 2 1 4 4 C 1.47009 * 111.00418 * 293.63446 * 3 2 1 5 5 C 1.53094 * 109.26265 * 177.60947 * 4 3 2 6 6 O 1.43013 * 109.25696 * 56.84886 * 5 4 3 7 7 C 1.43015 * 113.73841 * 301.32961 * 6 5 4 8 8 H 1.09002 * 109.54389 * 298.71046 * 7 6 5 9 9 C 1.50700 * 109.50626 * 178.60556 * 7 6 5 10 10 O 1.21283 * 120.00045 * 355.22088 * 9 7 6 11 11 N 1.34780 * 119.99924 * 175.21448 * 9 7 6 12 12 C 1.46497 * 119.99723 * 184.72208 * 11 9 7 13 13 H 1.09000 * 109.47784 * 326.20595 * 12 11 9 14 14 C 1.53004 * 109.47272 * 206.20600 * 12 11 9 15 15 N 1.46498 * 109.47206 * 54.99919 * 14 12 11 16 16 C 1.36929 * 120.00088 * 180.02562 * 15 14 12 17 17 H 1.07994 * 120.00331 * 0.02562 * 16 15 14 18 18 C 1.38821 * 119.99958 * 180.02562 * 16 15 14 19 19 N 1.31619 * 119.99663 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00082 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46926 * 60.00288 * 20 18 16 22 22 H 1.48500 * 109.46768 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.46907 * 300.00257 * 20 18 16 24 24 C 1.53008 * 109.46984 * 86.21126 * 12 11 9 25 25 C 1.54269 * 110.03271 * 180.54358 * 24 12 11 26 26 C 1.54890 * 104.19393 * 217.10029 * 25 24 12 27 27 C 1.54892 * 102.74808 * 37.94270 * 26 25 24 28 28 C 1.53871 * 110.03281 * 63.37288 * 24 12 11 29 29 C 1.47017 * 111.00080 * 169.99939 * 3 2 1 30 30 H 1.09003 * 109.46821 * 300.00083 * 1 2 3 31 31 H 1.08992 * 109.46973 * 59.99952 * 1 2 3 32 32 H 1.08994 * 109.47020 * 180.02562 * 1 2 3 33 33 H 1.08992 * 109.47328 * 239.99911 * 2 1 3 34 34 H 1.09000 * 109.47226 * 119.99974 * 2 1 3 35 35 H 1.08998 * 109.50455 * 297.54785 * 4 3 2 36 36 H 1.09002 * 109.50628 * 57.66955 * 4 3 2 37 37 H 1.08999 * 109.50965 * 176.78457 * 5 4 3 38 38 H 1.09004 * 109.50440 * 296.86944 * 5 4 3 39 39 H 0.97001 * 119.99986 * 5.00202 * 11 9 7 40 40 H 1.08991 * 109.47431 * 175.00362 * 14 12 11 41 41 H 1.09006 * 109.46628 * 295.00680 * 14 12 11 42 42 H 0.97007 * 119.99533 * 0.02562 * 15 14 12 43 43 H 0.97004 * 119.99860 * 180.02562 * 19 18 16 44 44 H 1.09004 * 110.00972 * 301.98116 * 24 12 11 45 45 H 1.08996 * 110.48154 * 335.77953 * 25 24 12 46 46 H 1.09001 * 110.48809 * 98.41951 * 25 24 12 47 47 H 1.08996 * 110.75801 * 279.63118 * 26 25 24 48 48 H 1.09003 * 110.75096 * 156.25345 * 26 25 24 49 49 H 1.08994 * 110.48921 * 203.37909 * 27 26 25 50 50 H 1.08998 * 110.59873 * 80.78772 * 27 26 25 51 51 H 1.09005 * 110.02887 * 238.56791 * 28 24 12 52 52 H 1.08995 * 110.03591 * 359.95013 * 28 24 12 53 53 H 1.08999 * 109.50751 * 62.45510 * 29 3 2 54 54 H 1.09004 * 109.50438 * 302.33111 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6766 2.0652 -1.2573 5 6 2.1515 3.5191 -1.1909 6 8 3.5570 3.5445 -0.9277 7 6 3.9267 2.8914 0.2898 8 1 3.4496 3.3928 1.1319 9 6 5.4236 2.9447 0.4549 10 8 6.1148 3.4104 -0.4262 11 7 5.9944 2.4748 1.5819 12 6 7.4376 2.6202 1.7875 13 1 7.9507 2.5444 0.8288 14 6 7.9339 1.5135 2.7203 15 7 7.5497 0.2083 2.1772 16 6 7.8876 -0.9379 2.8460 17 1 8.4370 -0.8796 3.7739 18 6 7.5240 -2.1747 2.3311 19 7 6.8549 -2.2457 1.1998 20 14 7.9844 -3.7383 3.2437 21 1 7.3735 -3.7195 4.5971 22 1 7.4842 -4.9164 2.4905 23 1 9.4618 -3.8218 3.3684 24 6 7.7284 3.9848 2.4153 25 6 9.2470 4.1572 2.6252 26 6 9.3606 4.9233 3.9665 27 6 8.2262 4.2968 4.8150 28 6 7.0794 4.0736 3.8076 29 6 3.4697 1.4312 0.2383 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 2.1662 1.5599 -2.0898 36 1 0.5963 2.0414 -1.4010 37 1 1.9505 4.0115 -2.1423 38 1 1.6216 4.0390 -0.3928 39 1 5.4502 2.0369 2.2550 40 1 9.0193 1.5675 2.8029 41 1 7.4875 1.6423 3.7064 42 1 7.0559 0.1560 1.3439 43 1 6.6006 -3.1099 0.8402 44 1 7.3468 4.7794 1.7741 45 1 9.7346 3.1851 2.6985 46 1 9.6803 4.7421 1.8138 47 1 9.1884 5.9893 3.8183 48 1 10.3315 4.7484 4.4302 49 1 7.9145 4.9837 5.6018 50 1 8.5475 3.3476 5.2437 51 1 6.3835 4.9119 3.8424 52 1 6.5565 3.1449 4.0358 53 1 3.9880 0.9159 -0.5702 54 1 3.6983 0.9446 1.1866 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733388387.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:23 Heat of formation + Delta-G solvation = -94.190614 kcal Electronic energy + Delta-G solvation = -31770.598011 eV Core-core repulsion = 27741.270003 eV Total energy + Delta-G solvation = -4029.328008 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.62456 -40.43831 -39.12669 -37.18954 -36.70750 -35.26830 -33.41811 -32.48724 -31.85321 -30.84545 -29.54245 -28.12219 -27.66806 -25.56906 -25.04557 -23.79668 -23.08033 -21.89102 -21.49844 -21.17584 -20.02384 -19.20858 -18.52417 -17.80473 -17.29248 -17.08983 -16.76683 -16.46194 -16.30530 -16.19547 -16.06955 -15.66280 -15.21974 -15.10574 -14.98655 -14.96183 -14.65935 -14.38159 -13.90437 -13.89343 -13.51275 -13.09594 -13.03967 -12.90066 -12.78314 -12.73352 -12.69616 -12.53357 -12.29688 -12.14056 -11.90657 -11.86362 -11.82629 -11.80831 -11.78127 -11.68460 -11.34040 -11.24194 -10.92042 -10.82246 -10.72015 -10.01711 -9.56681 -8.98179 -7.93002 -5.22171 1.47312 1.48106 1.50426 1.56170 1.80527 2.56296 2.63217 2.99663 3.41199 3.59522 3.63465 3.65663 3.73225 3.85414 3.88568 3.94437 4.00456 4.08314 4.21083 4.23864 4.26970 4.37572 4.46306 4.46625 4.52718 4.58469 4.60670 4.65719 4.71145 4.71614 4.74003 4.87558 4.87819 4.92779 4.94014 4.98065 5.05785 5.09720 5.14595 5.19146 5.31370 5.31536 5.33594 5.50792 5.51718 5.57694 5.59338 5.77039 5.89200 5.99089 6.26731 6.50682 7.17032 7.34531 8.07778 8.32022 9.29522 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.006781 B = 0.004695 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4128.096091 B = 5962.828178 C = 9259.890364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.044 3.956 3 N -0.527 5.527 4 C 0.010 3.990 5 C 0.059 3.941 6 O -0.387 6.387 7 C 0.092 3.908 8 H 0.117 0.883 9 C 0.520 3.480 10 O -0.570 6.570 11 N -0.697 5.697 12 C 0.153 3.847 13 H 0.054 0.946 14 C 0.149 3.851 15 N -0.742 5.742 16 C -0.240 4.240 17 H 0.078 0.922 18 C -0.071 4.071 19 N -0.967 5.967 20 Si 0.970 3.030 21 H -0.274 1.274 22 H -0.300 1.300 23 H -0.282 1.282 24 C -0.089 4.089 25 C -0.126 4.126 26 C -0.115 4.115 27 C -0.122 4.122 28 C -0.116 4.116 29 C 0.038 3.962 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.023 0.977 34 H 0.070 0.930 35 H 0.027 0.973 36 H 0.118 0.882 37 H 0.122 0.878 38 H 0.079 0.921 39 H 0.410 0.590 40 H 0.037 0.963 41 H 0.047 0.953 42 H 0.372 0.628 43 H 0.248 0.752 44 H 0.062 0.938 45 H 0.065 0.935 46 H 0.064 0.936 47 H 0.073 0.927 48 H 0.074 0.926 49 H 0.078 0.922 50 H 0.061 0.939 51 H 0.069 0.931 52 H 0.064 0.936 53 H 0.018 0.982 54 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.814 14.062 3.332 18.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.083 4.083 3 N -0.253 5.253 4 C -0.117 4.117 5 C -0.017 4.017 6 O -0.305 6.305 7 C 0.030 3.970 8 H 0.135 0.865 9 C 0.305 3.695 10 O -0.448 6.448 11 N -0.348 5.348 12 C 0.048 3.952 13 H 0.072 0.928 14 C 0.023 3.977 15 N -0.385 5.385 16 C -0.372 4.372 17 H 0.096 0.904 18 C -0.263 4.263 19 N -0.617 5.617 20 Si 0.799 3.201 21 H -0.200 1.200 22 H -0.227 1.227 23 H -0.208 1.208 24 C -0.109 4.109 25 C -0.164 4.164 26 C -0.153 4.153 27 C -0.159 4.159 28 C -0.154 4.154 29 C -0.091 4.091 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.042 0.958 34 H 0.088 0.912 35 H 0.046 0.954 36 H 0.136 0.864 37 H 0.140 0.860 38 H 0.097 0.903 39 H 0.246 0.754 40 H 0.055 0.945 41 H 0.065 0.935 42 H 0.204 0.796 43 H 0.057 0.943 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.083 0.917 47 H 0.092 0.908 48 H 0.093 0.907 49 H 0.097 0.903 50 H 0.080 0.920 51 H 0.088 0.912 52 H 0.083 0.917 53 H 0.036 0.964 54 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.351 14.641 3.115 18.199 hybrid contribution 0.341 -2.167 -0.689 2.299 sum -10.010 12.474 2.426 16.177 Atomic orbital electron populations 1.21728 0.92229 1.02575 1.02946 1.22192 0.97937 0.87555 1.00641 1.62370 1.11205 1.17162 1.34536 1.22991 1.03330 0.95524 0.89892 1.23011 0.79632 0.95375 1.03668 1.88080 1.25812 1.76689 1.39921 1.21850 0.91115 0.93683 0.90338 0.86538 1.20494 0.90045 0.77322 0.81605 1.90667 1.65113 1.47146 1.41893 1.45770 1.09291 1.59049 1.20716 1.21095 0.80162 0.95474 0.98442 0.92775 1.21179 0.97689 0.83375 0.95501 1.42534 1.67693 1.01040 1.27261 1.19555 1.28336 0.85499 1.03811 0.90363 1.25496 1.01847 1.00559 0.98439 1.69828 1.45677 1.24050 1.22182 0.85271 0.77771 0.79208 0.77843 1.20033 1.22651 1.20794 1.22020 0.96955 0.94619 0.97321 1.22516 0.94231 1.00984 0.98648 1.22444 0.99053 0.99464 0.94317 1.22357 0.95066 1.00917 0.97564 1.22202 0.98262 1.01933 0.92970 1.22509 0.89383 0.95129 1.02116 0.91376 0.91688 0.91244 0.95821 0.91165 0.95440 0.86359 0.86007 0.90293 0.75372 0.94549 0.93484 0.79585 0.94283 0.91935 0.91601 0.91742 0.90783 0.90734 0.90323 0.92017 0.91190 0.91731 0.96388 0.88837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.85 71.98 0.71 -1.59 16 2 C 0.04 1.04 5.68 86.30 0.49 1.53 16 3 N -0.53 -12.90 4.73 -895.24 -4.23 -17.13 16 4 C 0.01 0.22 5.44 86.31 0.47 0.69 16 5 C 0.06 1.23 7.01 72.01 0.50 1.73 16 6 O -0.39 -11.95 10.01 -130.02 -1.30 -13.25 16 7 C 0.09 2.70 3.22 29.88 0.10 2.79 16 8 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 9 C 0.52 18.60 7.16 87.66 0.63 19.23 16 10 O -0.57 -25.26 16.12 15.92 0.26 -25.01 16 11 N -0.70 -22.75 4.02 -442.51 -1.78 -24.53 16 12 C 0.15 5.25 1.94 45.00 0.09 5.34 16 13 H 0.05 2.24 7.48 -2.39 -0.02 2.22 16 14 C 0.15 5.62 5.26 86.38 0.45 6.08 16 15 N -0.74 -36.32 5.43 -343.45 -1.87 -38.19 16 16 C -0.24 -12.91 9.99 84.04 0.84 -12.07 16 17 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 18 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 19 N -0.97 -58.25 13.06 21.65 0.28 -57.97 16 20 Si 0.97 45.24 29.55 68.60 2.03 47.27 16 21 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 22 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 23 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 24 C -0.09 -2.44 2.95 -10.07 -0.03 -2.47 16 25 C -0.13 -3.14 6.19 31.67 0.20 -2.94 16 26 C -0.12 -2.26 6.91 31.89 0.22 -2.04 16 27 C -0.12 -2.42 6.83 31.67 0.22 -2.20 16 28 C -0.12 -2.64 5.62 31.32 0.18 -2.46 16 29 C 0.04 1.14 4.87 86.31 0.42 1.56 16 30 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.06 0.93 6.52 -2.39 -0.02 0.91 16 32 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.02 0.62 8.12 -2.39 -0.02 0.60 16 34 H 0.07 1.81 8.04 -2.39 -0.02 1.79 16 35 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.12 1.79 6.38 -2.39 -0.02 1.77 16 37 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 39 H 0.41 12.30 8.24 -92.71 -0.76 11.53 16 40 H 0.04 1.40 6.29 -2.39 -0.02 1.39 16 41 H 0.05 1.66 6.13 -2.38 -0.01 1.65 16 42 H 0.37 20.01 7.33 -92.70 -0.68 19.33 16 43 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 44 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.07 1.80 5.85 -2.39 -0.01 1.79 16 46 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 48 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 49 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 50 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 51 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 52 H 0.06 1.57 5.86 -2.39 -0.01 1.55 16 53 H 0.02 0.66 8.14 -2.39 -0.02 0.65 16 54 H 0.09 2.86 7.80 -2.39 -0.02 2.84 16 Total: -1.00 -70.41 412.82 -1.22 -71.63 By element: Atomic # 1 Polarization: 48.07 SS G_CDS: -0.55 Total: 47.51 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: 5.94 Total: 9.66 kcal Atomic # 7 Polarization: -130.23 SS G_CDS: -7.59 Total: -137.82 kcal Atomic # 8 Polarization: -37.22 SS G_CDS: -1.04 Total: -38.26 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -70.41 -1.22 -71.63 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733388387.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.557 kcal (2) G-P(sol) polarization free energy of solvation -70.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds