Wall clock time and date at job start Sat Apr 11 2020 05:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46898 * 109.46867 * 2 1 4 4 C 1.46853 * 110.99635 * 71.50376 * 3 2 1 5 5 C 1.53037 * 109.52033 * 185.83707 * 4 3 2 6 6 C 1.53112 * 109.28125 * 300.81684 * 5 4 3 7 7 C 1.53122 * 109.15836 * 57.65753 * 6 5 4 8 8 C 1.46842 * 111.00211 * 195.70862 * 3 2 1 9 9 H 1.09002 * 109.46406 * 294.17663 * 8 3 2 10 10 C 1.50707 * 109.46153 * 54.14917 * 8 3 2 11 11 O 1.21276 * 119.99780 * 28.80953 * 10 8 3 12 12 N 1.34778 * 120.00030 * 208.81684 * 10 8 3 13 13 C 1.46502 * 119.99816 * 180.02562 * 12 10 8 14 14 C 1.53001 * 109.47067 * 174.72204 * 13 12 10 15 15 N 1.46500 * 109.61844 * 56.66745 * 14 13 12 16 16 C 1.36938 * 119.99756 * 55.62085 * 15 14 13 17 17 H 1.08007 * 119.99804 * 5.20021 * 16 15 14 18 18 C 1.38807 * 120.00361 * 185.20129 * 16 15 14 19 19 N 1.31621 * 119.99486 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00307 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47080 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.46995 * 119.99745 * 20 18 16 23 23 H 1.48504 * 109.47094 * 239.99833 * 20 18 16 24 24 C 1.53181 * 109.54175 * 296.44999 * 14 13 12 25 25 C 1.53094 * 109.16395 * 183.15307 * 24 14 13 26 26 O 1.42901 * 109.42220 * 57.60037 * 25 24 14 27 27 C 1.42904 * 114.09945 * 298.85963 * 26 25 24 28 28 C 1.53098 * 109.42190 * 61.14310 * 27 26 25 29 29 H 1.09000 * 109.47064 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46899 * 299.98676 * 1 2 3 31 31 H 1.08987 * 109.47938 * 59.99403 * 1 2 3 32 32 H 1.09001 * 109.46496 * 240.00966 * 2 1 3 33 33 H 1.08989 * 109.47505 * 120.00899 * 2 1 3 34 34 H 1.09008 * 109.46104 * 305.84979 * 4 3 2 35 35 H 1.09000 * 109.46039 * 65.81939 * 4 3 2 36 36 H 1.09002 * 109.50642 * 60.76257 * 5 4 3 37 37 H 1.09001 * 109.50118 * 180.83565 * 5 4 3 38 38 H 1.08997 * 109.52796 * 177.56071 * 6 5 4 39 39 H 1.09001 * 109.52343 * 297.69239 * 6 5 4 40 40 H 1.09001 * 109.50596 * 182.41015 * 7 6 5 41 41 H 1.08994 * 109.50537 * 62.28901 * 7 6 5 42 42 H 0.97002 * 119.99705 * 359.97438 * 12 10 8 43 43 H 1.09000 * 109.47117 * 54.71812 * 13 12 10 44 44 H 1.09003 * 109.46957 * 294.71822 * 13 12 10 45 45 H 0.96994 * 120.00409 * 235.62593 * 15 14 13 46 46 H 0.97010 * 119.99702 * 180.02562 * 19 18 16 47 47 H 1.08995 * 109.52237 * 63.24405 * 24 14 13 48 48 H 1.09002 * 109.57213 * 303.08725 * 24 14 13 49 49 H 1.09000 * 109.48082 * 177.59025 * 25 24 14 50 50 H 1.09003 * 109.47867 * 297.61271 * 25 24 14 51 51 H 1.08994 * 109.47052 * 301.15899 * 27 26 25 52 52 H 1.08998 * 109.48809 * 181.13543 * 27 26 25 53 53 H 1.08996 * 109.52078 * 182.49151 * 28 27 26 54 54 H 1.08995 * 109.52524 * 62.30297 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7849 2.0261 1.3002 5 6 2.1723 3.5043 1.2188 6 6 3.6491 3.6194 0.8313 7 6 3.8760 2.9022 -0.5024 8 6 3.4393 1.4414 -0.3712 9 1 4.0357 0.9518 0.3988 10 6 3.6425 0.7363 -1.6876 11 8 2.7429 0.6981 -2.5001 12 7 4.8237 0.1482 -1.9618 13 6 5.0214 -0.5366 -3.2417 14 6 6.4759 -0.9980 -3.3539 15 7 6.8095 -1.8547 -2.2133 16 6 6.0555 -2.9667 -1.9486 17 1 5.2678 -3.2592 -2.6273 18 6 6.3033 -3.7180 -0.8081 19 7 7.2636 -3.3618 0.0187 20 14 5.2752 -5.2353 -0.4473 21 1 4.2687 -5.4186 -1.5236 22 1 6.1577 -6.4281 -0.3858 23 1 4.5815 -5.0651 0.8547 24 6 7.4012 0.2227 -3.3658 25 6 8.8466 -0.2441 -3.5574 26 8 8.9473 -0.9925 -4.7706 27 6 8.1396 -2.1710 -4.7980 28 6 6.6658 -1.7816 -4.6563 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5136 0.8901 31 1 -0.3634 0.5138 -0.8898 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8898 34 1 0.7302 1.9409 1.5620 35 1 2.3891 1.5336 2.0622 36 1 1.5590 4.0005 0.4666 37 1 2.0120 3.9764 2.1881 38 1 3.9183 4.6707 0.7299 39 1 4.2653 3.1584 1.6033 40 1 4.9337 2.9437 -0.7626 41 1 3.2896 3.3887 -1.2817 42 1 5.5432 0.1791 -1.3119 43 1 4.7931 0.1476 -4.0589 44 1 4.3605 -1.4017 -3.2967 45 1 7.5645 -1.6343 -1.6457 46 1 7.4370 -3.8871 0.8156 47 1 7.3130 0.7558 -2.4192 48 1 7.1209 0.8854 -4.1845 49 1 9.5048 0.6231 -3.6095 50 1 9.1398 -0.8732 -2.7169 51 1 8.4236 -2.8254 -3.9739 52 1 8.2885 -2.6921 -5.7438 53 1 6.0518 -2.6818 -4.6325 54 1 6.3702 -1.1602 -5.5016 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733474125.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:38 Heat of formation + Delta-G solvation = -94.864221 kcal Electronic energy + Delta-G solvation = -32451.075342 eV Core-core repulsion = 28421.718124 eV Total energy + Delta-G solvation = -4029.357218 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.51152 -40.63318 -38.99454 -37.26726 -35.39339 -34.98060 -33.88958 -32.23686 -31.98447 -30.97228 -30.75065 -28.35524 -26.01525 -25.61452 -24.93854 -24.37618 -23.30801 -22.45935 -21.34664 -20.69245 -20.11487 -19.15396 -18.31730 -17.45027 -17.11474 -16.81408 -16.69389 -16.36069 -16.05560 -15.95588 -15.72123 -15.51126 -15.40253 -15.29685 -14.94723 -14.46537 -14.30220 -14.28133 -14.08162 -13.74663 -13.68193 -13.38796 -13.17475 -12.94968 -12.90875 -12.81828 -12.72189 -12.70473 -12.33085 -12.22116 -12.11740 -12.08761 -11.77349 -11.74148 -11.59114 -11.53101 -11.24257 -11.15166 -10.96549 -10.58310 -10.33404 -9.90120 -9.34973 -9.00376 -7.94187 -5.19932 1.39739 1.44645 1.49715 1.66010 2.21682 2.52896 2.87922 3.06226 3.39406 3.68859 3.72755 3.82295 3.86467 3.93124 3.98509 4.06075 4.11326 4.14036 4.19835 4.22596 4.29673 4.39964 4.45417 4.52580 4.56039 4.59172 4.69366 4.75348 4.76582 4.78358 4.82105 4.88063 4.89622 4.93521 5.01042 5.06614 5.07802 5.08206 5.17285 5.19793 5.21096 5.26929 5.29756 5.32928 5.46203 5.56243 5.62391 5.93424 6.11113 6.27902 6.35367 6.67820 7.33093 7.37735 8.06101 8.33332 9.28051 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.009824 B = 0.004260 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2849.341223 B = 6571.857212 C = 8112.168177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.044 3.956 3 N -0.523 5.523 4 C 0.050 3.950 5 C -0.113 4.113 6 C -0.115 4.115 7 C -0.099 4.099 8 C 0.073 3.927 9 H 0.054 0.946 10 C 0.512 3.488 11 O -0.571 6.571 12 N -0.698 5.698 13 C 0.131 3.869 14 C 0.187 3.813 15 N -0.712 5.712 16 C -0.210 4.210 17 H 0.064 0.936 18 C -0.058 4.058 19 N -0.958 5.958 20 Si 0.944 3.056 21 H -0.277 1.277 22 H -0.296 1.296 23 H -0.301 1.301 24 C -0.142 4.142 25 C 0.064 3.936 26 O -0.396 6.396 27 C 0.075 3.925 28 C -0.153 4.153 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.026 0.974 34 H 0.089 0.911 35 H 0.031 0.969 36 H 0.068 0.932 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.405 0.595 43 H 0.064 0.936 44 H 0.033 0.967 45 H 0.378 0.622 46 H 0.248 0.752 47 H 0.079 0.921 48 H 0.087 0.913 49 H 0.113 0.887 50 H 0.038 0.962 51 H 0.036 0.964 52 H 0.100 0.900 53 H 0.059 0.941 54 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.618 14.456 0.223 15.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.084 4.084 3 N -0.249 5.249 4 C -0.077 4.077 5 C -0.150 4.150 6 C -0.153 4.153 7 C -0.138 4.138 8 C -0.039 4.039 9 H 0.072 0.928 10 C 0.298 3.702 11 O -0.450 6.450 12 N -0.348 5.348 13 C 0.005 3.995 14 C 0.097 3.903 15 N -0.353 5.353 16 C -0.342 4.342 17 H 0.081 0.919 18 C -0.251 4.251 19 N -0.609 5.609 20 Si 0.776 3.224 21 H -0.202 1.202 22 H -0.224 1.224 23 H -0.228 1.228 24 C -0.180 4.180 25 C -0.012 4.012 26 O -0.316 6.316 27 C -0.001 4.001 28 C -0.193 4.193 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.045 0.955 34 H 0.107 0.893 35 H 0.049 0.951 36 H 0.086 0.914 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.084 0.916 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.241 0.759 43 H 0.082 0.918 44 H 0.051 0.949 45 H 0.212 0.788 46 H 0.057 0.943 47 H 0.098 0.902 48 H 0.106 0.894 49 H 0.131 0.869 50 H 0.056 0.944 51 H 0.054 0.946 52 H 0.118 0.882 53 H 0.078 0.922 54 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.529 14.597 -0.875 15.634 hybrid contribution 0.256 -2.208 1.625 2.753 sum -5.273 12.389 0.750 13.486 Atomic orbital electron populations 1.21627 0.92958 1.01808 1.02461 1.22126 0.97975 0.88817 0.99487 1.61795 1.14882 1.17116 1.31066 1.22315 1.01943 0.95722 0.87724 1.21604 0.96328 0.94354 1.02762 1.21582 0.96833 1.01380 0.95498 1.21520 1.01493 0.90866 0.99871 1.21614 0.90727 0.98508 0.93030 0.92823 1.20805 0.81830 0.78433 0.89131 1.90632 1.42627 1.61497 1.50288 1.45806 1.15064 1.54089 1.19869 1.21567 0.97934 0.95011 0.85009 1.20020 0.91418 0.90590 0.88299 1.42512 1.34907 1.26873 1.31010 1.19205 1.10503 1.01533 1.02945 0.91851 1.25133 1.00283 1.01716 0.97991 1.69747 1.34567 1.41795 1.14747 0.85509 0.78508 0.81206 0.77175 1.20219 1.22381 1.22841 1.22298 0.95459 0.96819 1.03419 1.22588 0.96269 0.95778 0.86581 1.87808 1.66767 1.38482 1.38500 1.22374 0.89438 0.86708 1.01606 1.22466 0.97666 1.01038 0.98112 0.91991 0.91103 0.92741 0.93260 0.95527 0.89267 0.95054 0.91367 0.89154 0.89357 0.91640 0.90065 0.91514 0.75934 0.91753 0.94889 0.78829 0.94323 0.90198 0.89439 0.86903 0.94391 0.94554 0.88183 0.92245 0.90454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.32 9.96 71.98 0.72 -2.61 16 2 C 0.04 1.36 5.32 86.30 0.46 1.82 16 3 N -0.52 -14.78 4.21 -875.49 -3.69 -18.47 16 4 C 0.05 1.07 5.30 86.32 0.46 1.53 16 5 C -0.11 -1.90 6.09 30.64 0.19 -1.71 16 6 C -0.12 -1.95 6.00 30.67 0.18 -1.77 16 7 C -0.10 -2.22 5.36 30.65 0.16 -2.05 16 8 C 0.07 2.10 2.23 44.19 0.10 2.20 16 9 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 10 C 0.51 17.99 5.70 87.66 0.50 18.49 16 11 O -0.57 -23.87 15.36 -3.02 -0.05 -23.92 16 12 N -0.70 -23.88 5.11 -463.05 -2.37 -26.25 16 13 C 0.13 4.67 4.30 86.38 0.37 5.04 16 14 C 0.19 6.37 0.41 3.72 0.00 6.37 16 15 N -0.71 -30.04 3.76 -302.81 -1.14 -31.18 16 16 C -0.21 -10.38 8.68 84.03 0.73 -9.65 16 17 H 0.06 3.21 6.75 -2.91 -0.02 3.19 16 18 C -0.06 -3.09 5.50 84.86 0.47 -2.63 16 19 N -0.96 -53.66 13.06 21.65 0.28 -53.37 16 20 Si 0.94 44.94 29.55 68.60 2.03 46.97 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 22 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 23 H -0.30 -14.58 7.11 99.48 0.71 -13.88 16 24 C -0.14 -3.94 4.80 30.69 0.15 -3.79 16 25 C 0.06 1.84 6.67 72.01 0.48 2.32 16 26 O -0.40 -12.59 10.77 -148.98 -1.60 -14.20 16 27 C 0.08 2.45 6.68 72.01 0.48 2.93 16 28 C -0.15 -4.99 4.87 30.68 0.15 -4.85 16 29 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.07 1.47 6.64 -2.39 -0.02 1.46 16 31 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.05 1.88 5.68 -2.39 -0.01 1.87 16 33 H 0.03 0.83 8.06 -2.39 -0.02 0.81 16 34 H 0.09 1.70 6.48 -2.38 -0.02 1.68 16 35 H 0.03 0.68 8.14 -2.39 -0.02 0.67 16 36 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.08 1.62 8.14 -2.39 -0.02 1.61 16 41 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.40 13.55 7.41 -92.71 -0.69 12.87 16 43 H 0.06 2.17 8.13 -2.39 -0.02 2.15 16 44 H 0.03 1.38 7.28 -2.39 -0.02 1.36 16 45 H 0.38 17.22 6.60 -92.71 -0.61 16.61 16 46 H 0.25 13.79 8.31 -92.70 -0.77 13.02 16 47 H 0.08 2.08 7.30 -2.39 -0.02 2.06 16 48 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 49 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 50 H 0.04 1.25 7.01 -2.39 -0.02 1.23 16 51 H 0.04 1.40 7.75 -2.39 -0.02 1.38 16 52 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 53 H 0.06 2.14 7.36 -2.39 -0.02 2.12 16 54 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -62.55 405.75 -1.35 -63.90 By element: Atomic # 1 Polarization: 45.27 SS G_CDS: -0.41 Total: 44.86 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: 5.59 Total: 11.66 kcal Atomic # 7 Polarization: -122.36 SS G_CDS: -6.91 Total: -129.27 kcal Atomic # 8 Polarization: -36.46 SS G_CDS: -1.65 Total: -38.11 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -62.55 -1.35 -63.90 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733474125.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.963 kcal (2) G-P(sol) polarization free energy of solvation -62.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds