Wall clock time and date at job start Sat Apr 11 2020 05:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 109.47371 * 2 1 4 4 C 1.36937 * 120.00245 * 275.24102 * 3 2 1 5 5 H 1.07995 * 119.99766 * 37.69700 * 4 3 2 6 6 C 1.38805 * 119.99989 * 217.70256 * 4 3 2 7 7 N 1.31627 * 120.00298 * 21.65086 * 6 4 3 8 8 Si 1.86801 * 120.00003 * 201.64868 * 6 4 3 9 9 H 1.48499 * 109.47220 * 90.00037 * 8 6 4 10 10 H 1.48506 * 109.47113 * 209.99944 * 8 6 4 11 11 H 1.48498 * 109.47078 * 329.99474 * 8 6 4 12 12 C 1.46504 * 119.99792 * 95.23541 * 3 2 1 13 13 C 1.53000 * 109.47120 * 270.00284 * 12 3 2 14 14 C 1.53354 * 109.41813 * 295.12693 * 13 12 3 15 15 C 1.53192 * 109.15000 * 178.67552 * 14 13 12 16 16 N 1.46923 * 108.89564 * 54.57973 * 15 14 13 17 17 C 1.34777 * 120.63208 * 126.33858 * 16 15 14 18 18 O 1.21283 * 119.99726 * 0.02562 * 17 16 15 19 19 C 1.50695 * 119.99765 * 180.02562 * 17 16 15 20 20 C 1.53002 * 109.47187 * 180.02562 * 19 17 16 21 21 C 1.52998 * 109.47419 * 179.97438 * 20 19 17 22 22 C 1.52999 * 109.46805 * 180.02562 * 21 20 19 23 23 C 1.50708 * 109.46813 * 180.02562 * 22 21 20 24 24 N 1.34770 * 119.99937 * 179.97438 * 23 22 21 25 25 O 1.21283 * 119.99604 * 359.97438 * 23 22 21 26 26 C 1.46932 * 118.73742 * 306.32561 * 16 15 14 27 27 C 1.53036 * 109.45914 * 175.00240 * 13 12 3 28 28 H 1.08995 * 109.46842 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47313 * 300.00151 * 1 2 3 30 30 H 1.09005 * 109.47000 * 59.99959 * 1 2 3 31 31 H 1.08997 * 109.47709 * 240.00177 * 2 1 3 32 32 H 1.09005 * 109.47349 * 119.99623 * 2 1 3 33 33 H 0.96998 * 119.99913 * 180.02562 * 7 6 4 34 34 H 1.09004 * 109.46993 * 150.00624 * 12 3 2 35 35 H 1.08996 * 109.47291 * 30.00671 * 12 3 2 36 36 H 1.09001 * 109.46484 * 55.02635 * 13 12 3 37 37 H 1.09009 * 109.68200 * 58.71291 * 14 13 12 38 38 H 1.09000 * 109.47800 * 298.51304 * 14 13 12 39 39 H 1.09001 * 109.58598 * 294.71837 * 15 14 13 40 40 H 1.08994 * 109.58747 * 174.44224 * 15 14 13 41 41 H 1.08997 * 109.47527 * 299.99890 * 19 17 16 42 42 H 1.09001 * 109.47653 * 60.00309 * 19 17 16 43 43 H 1.09000 * 109.46970 * 300.00657 * 20 19 17 44 44 H 1.09004 * 109.46877 * 60.00060 * 20 19 17 45 45 H 1.09004 * 109.47048 * 299.99839 * 21 20 19 46 46 H 1.08996 * 109.46949 * 60.00496 * 21 20 19 47 47 H 1.08997 * 109.47381 * 299.99501 * 22 21 20 48 48 H 1.09004 * 109.47328 * 60.00194 * 22 21 20 49 49 H 0.97003 * 120.00044 * 359.97438 * 24 23 22 50 50 H 0.97004 * 120.00299 * 180.02562 * 24 23 22 51 51 H 1.08995 * 109.58693 * 173.39435 * 26 16 15 52 52 H 1.09005 * 109.58112 * 293.67357 * 26 16 15 53 53 H 1.09003 * 109.49892 * 61.43756 * 27 13 12 54 54 H 1.08996 * 109.52736 * 301.35150 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1445 2.0629 -1.1809 5 1 1.4118 1.9286 -1.9628 6 6 3.2142 2.9264 -1.3730 7 7 4.3072 2.7908 -0.6522 8 14 3.1027 4.2809 -2.6545 9 1 2.5454 5.5079 -2.0308 10 1 4.4578 4.5692 -3.1893 11 1 2.2164 3.8424 -3.7624 12 6 2.3717 2.0332 1.2635 13 6 1.1404 2.7390 1.8350 14 6 0.7199 3.8736 0.8928 15 6 -0.5325 4.5545 1.4538 16 7 -0.2640 4.9821 2.8335 17 6 -0.4683 6.2605 3.2084 18 8 -0.8780 7.0702 2.4037 19 6 -0.1876 6.6836 4.6272 20 6 -0.5009 8.1727 4.7867 21 6 -0.2165 8.6022 6.2274 22 6 -0.5304 10.0912 6.3870 23 6 -0.2497 10.5144 7.8059 24 7 -0.4545 11.7926 8.1808 25 8 0.1605 9.7047 8.6103 26 6 0.2313 3.9895 3.7970 27 6 1.4759 3.3137 3.2131 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 5.0545 3.3945 -0.7862 34 1 3.1604 2.7646 1.0868 35 1 2.7232 1.2842 1.9730 36 1 0.3229 2.0242 1.9289 37 1 0.5020 3.4684 -0.0954 38 1 1.5274 4.6019 0.8180 39 1 -1.3656 3.8518 1.4446 40 1 -0.7804 5.4231 0.8438 41 1 -0.8122 6.1063 5.3089 42 1 0.8627 6.5062 4.8583 43 1 0.1233 8.7504 4.1050 44 1 -1.5513 8.3498 4.5558 45 1 -0.8412 8.0246 6.9088 46 1 0.8338 8.4252 6.4587 47 1 0.0939 10.6692 5.7056 48 1 -1.5809 10.2679 6.1557 49 1 -0.7822 12.4403 7.5373 50 1 -0.2735 12.0652 9.0940 51 1 0.4897 4.4856 4.7325 52 1 -0.5406 3.2421 3.9809 53 1 2.2764 4.0472 3.1163 54 1 1.7974 2.5094 3.8748 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733920410.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:41 Heat of formation + Delta-G solvation = -108.911911 kcal Electronic energy + Delta-G solvation = -30404.914290 eV Core-core repulsion = 26374.947919 eV Total energy + Delta-G solvation = -4029.966371 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.22045 -40.45722 -39.07888 -37.29106 -36.09075 -34.60359 -34.10113 -33.73843 -32.41524 -31.27683 -30.50751 -28.33484 -26.74788 -25.67302 -24.07839 -23.76329 -22.45126 -21.99874 -21.23148 -21.06650 -19.75738 -18.53409 -18.17017 -18.05984 -17.44626 -17.14100 -16.87528 -16.70676 -16.36733 -15.81302 -15.56217 -15.28764 -15.10298 -14.89535 -14.81896 -14.63494 -14.25259 -14.05027 -13.99798 -13.64105 -13.40082 -13.34040 -13.12479 -13.00417 -12.95845 -12.65004 -12.50734 -12.30530 -12.24300 -12.14967 -12.04107 -11.99537 -11.88463 -11.66337 -11.52541 -11.48957 -11.16948 -11.00838 -10.98834 -10.69308 -10.61413 -10.41344 -9.58338 -8.47517 -7.76930 -5.37900 1.39704 1.45686 1.48935 1.66638 1.69050 2.08946 2.49875 2.69230 3.26814 3.57086 3.72843 3.85046 3.99924 4.03280 4.04815 4.07662 4.22559 4.27822 4.39754 4.43627 4.47687 4.49833 4.53862 4.64896 4.74033 4.78129 4.83037 4.85036 4.86227 4.89825 4.91536 4.94207 5.02520 5.08559 5.10939 5.16202 5.27951 5.34246 5.36287 5.39117 5.46281 5.49446 5.54222 5.65539 5.72841 5.78340 5.93463 5.97420 6.50236 6.51218 6.52432 7.21462 7.24485 7.39455 7.95941 8.46911 9.16300 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015561 B = 0.002246 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.923911 B =12464.022270 C =13179.256351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.136 3.864 3 N -0.599 5.599 4 C -0.242 4.242 5 H 0.049 0.951 6 C -0.026 4.026 7 N -0.915 5.915 8 Si 0.930 3.070 9 H -0.292 1.292 10 H -0.296 1.296 11 H -0.269 1.269 12 C 0.155 3.845 13 C -0.090 4.090 14 C -0.101 4.101 15 C 0.117 3.883 16 N -0.610 5.610 17 C 0.503 3.497 18 O -0.594 6.594 19 C -0.133 4.133 20 C -0.097 4.097 21 C -0.098 4.098 22 C -0.140 4.140 23 C 0.511 3.489 24 N -0.842 5.842 25 O -0.597 6.597 26 C 0.111 3.889 27 C -0.125 4.125 28 H 0.062 0.938 29 H 0.051 0.949 30 H 0.033 0.967 31 H 0.026 0.974 32 H 0.045 0.955 33 H 0.247 0.753 34 H 0.055 0.945 35 H 0.026 0.974 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.019 0.981 39 H 0.077 0.923 40 H 0.062 0.938 41 H 0.119 0.881 42 H 0.107 0.893 43 H 0.056 0.944 44 H 0.066 0.934 45 H 0.068 0.932 46 H 0.061 0.939 47 H 0.111 0.889 48 H 0.116 0.884 49 H 0.418 0.582 50 H 0.404 0.596 51 H 0.112 0.888 52 H 0.088 0.912 53 H 0.045 0.955 54 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.247 11.325 17.668 24.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.010 3.990 3 N -0.320 5.320 4 C -0.372 4.372 5 H 0.067 0.933 6 C -0.224 4.224 7 N -0.560 5.560 8 Si 0.760 3.240 9 H -0.219 1.219 10 H -0.223 1.223 11 H -0.194 1.194 12 C 0.029 3.971 13 C -0.110 4.110 14 C -0.139 4.139 15 C -0.006 4.006 16 N -0.342 5.342 17 C 0.294 3.706 18 O -0.475 6.475 19 C -0.173 4.173 20 C -0.135 4.135 21 C -0.137 4.137 22 C -0.180 4.180 23 C 0.297 3.703 24 N -0.405 5.405 25 O -0.478 6.478 26 C -0.011 4.011 27 C -0.164 4.164 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.044 0.956 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.044 0.956 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.038 0.962 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.137 0.863 42 H 0.125 0.875 43 H 0.075 0.925 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.080 0.920 47 H 0.129 0.871 48 H 0.134 0.866 49 H 0.249 0.751 50 H 0.235 0.765 51 H 0.130 0.870 52 H 0.106 0.894 53 H 0.064 0.936 54 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.049 11.155 17.581 24.056 hybrid contribution 0.498 1.176 -1.214 1.762 sum -11.551 12.330 16.367 23.523 Atomic orbital electron populations 1.22165 0.97474 1.00561 1.00719 1.20960 0.93646 0.85865 0.98493 1.43979 1.76282 1.09393 1.02340 1.18969 1.03222 1.20433 0.94627 0.93289 1.25559 0.94300 1.02995 0.99501 1.70110 1.03592 1.38006 1.44243 0.85836 0.76560 0.81145 0.80458 1.21920 1.22265 1.19389 1.20870 0.95393 0.95617 0.85260 1.21662 0.99440 0.96131 0.93807 1.21692 0.95409 0.96737 1.00093 1.21517 0.97596 0.98793 0.82664 1.48338 1.64737 1.09665 1.11497 1.21493 0.76309 0.81041 0.91770 1.90642 1.48634 1.52368 1.55888 1.21757 1.05145 0.98913 0.91471 1.21268 1.02307 0.93638 0.96247 1.21262 1.02316 0.94692 0.95386 1.21710 1.05699 0.98144 0.92402 1.21167 0.75547 0.82415 0.91125 1.43818 1.69200 1.10569 1.16963 1.90736 1.47913 1.53344 1.55821 1.21984 0.95991 0.91402 0.91699 1.21905 0.97494 1.00366 0.96616 0.91868 0.92968 0.94825 0.95580 0.93613 0.94316 0.92750 0.95565 0.91392 0.91338 0.96240 0.90491 0.91992 0.86259 0.87523 0.92472 0.91486 0.91336 0.92048 0.87107 0.86585 0.75068 0.76490 0.86956 0.89381 0.93604 0.88965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.92 10.21 71.98 0.73 -4.19 16 2 C 0.14 5.42 6.44 86.38 0.56 5.97 16 3 N -0.60 -28.12 2.31 -702.00 -1.62 -29.74 16 4 C -0.24 -12.76 7.35 84.03 0.62 -12.14 16 5 H 0.05 2.64 7.92 -2.91 -0.02 2.62 16 6 C -0.03 -1.43 4.95 84.86 0.42 -1.02 16 7 N -0.91 -53.07 11.50 21.65 0.25 -52.82 16 8 Si 0.93 45.35 29.61 68.60 2.03 47.38 16 9 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 10 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 11 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 12 C 0.15 6.76 4.84 86.38 0.42 7.18 16 13 C -0.09 -3.12 2.36 -10.66 -0.03 -3.15 16 14 C -0.10 -3.96 4.97 30.78 0.15 -3.80 16 15 C 0.12 3.88 6.42 86.36 0.55 4.43 16 16 N -0.61 -17.09 2.97 -818.90 -2.44 -19.53 16 17 C 0.50 14.39 7.70 87.66 0.67 15.06 16 18 O -0.59 -21.95 15.40 -3.04 -0.05 -21.99 16 19 C -0.13 -2.48 4.05 29.85 0.12 -2.36 16 20 C -0.10 -1.72 4.50 30.59 0.14 -1.58 16 21 C -0.10 -1.49 4.50 30.59 0.14 -1.35 16 22 C -0.14 -1.53 5.70 29.85 0.17 -1.36 16 23 C 0.51 7.70 8.10 87.66 0.71 8.41 16 24 N -0.84 -5.91 8.87 -173.53 -1.54 -7.45 16 25 O -0.60 -15.07 16.82 -3.04 -0.05 -15.12 16 26 C 0.11 2.32 6.34 86.36 0.55 2.87 16 27 C -0.13 -3.38 5.36 30.67 0.16 -3.22 16 28 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.05 1.63 6.47 -2.39 -0.02 1.61 16 30 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 31 H 0.03 1.10 8.08 -2.39 -0.02 1.08 16 32 H 0.05 1.68 7.83 -2.38 -0.02 1.66 16 33 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 34 H 0.05 2.85 5.54 -2.39 -0.01 2.83 16 35 H 0.03 1.09 7.86 -2.39 -0.02 1.07 16 36 H 0.07 2.22 6.47 -2.39 -0.02 2.21 16 37 H 0.07 3.04 6.27 -2.38 -0.01 3.03 16 38 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.06 2.31 7.00 -2.39 -0.02 2.29 16 41 H 0.12 1.59 7.94 -2.39 -0.02 1.57 16 42 H 0.11 1.76 7.69 -2.39 -0.02 1.74 16 43 H 0.06 1.18 8.10 -2.39 -0.02 1.16 16 44 H 0.07 1.24 8.10 -2.39 -0.02 1.22 16 45 H 0.07 1.08 8.10 -2.38 -0.02 1.06 16 46 H 0.06 1.07 8.10 -2.39 -0.02 1.05 16 47 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 49 H 0.42 0.19 8.83 -92.71 -0.82 -0.63 16 50 H 0.40 2.47 8.93 -92.70 -0.83 1.64 16 51 H 0.11 1.65 5.93 -2.39 -0.01 1.64 16 52 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 53 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 54 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -76.11 419.36 1.92 -74.18 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -0.76 Total: 15.32 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: 6.09 Total: 9.76 kcal Atomic # 7 Polarization: -104.18 SS G_CDS: -5.35 Total: -109.53 kcal Atomic # 8 Polarization: -37.02 SS G_CDS: -0.10 Total: -37.11 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -76.11 1.92 -74.18 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733920410.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.727 kcal (2) G-P(sol) polarization free energy of solvation -76.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds