Wall clock time and date at job start Sat Apr 11 2020 05:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47224 * 2 1 4 4 N 1.46501 * 109.47251 * 239.99666 * 2 1 3 5 5 C 1.34780 * 119.99655 * 84.99942 * 4 2 1 6 6 O 1.21284 * 120.00221 * 0.02562 * 5 4 2 7 7 C 1.50701 * 119.99868 * 180.02562 * 5 4 2 8 8 C 1.52991 * 109.47146 * 180.02562 * 7 5 4 9 9 C 1.53003 * 109.47208 * 300.00452 * 7 5 4 10 10 C 1.52999 * 109.47139 * 59.99858 * 7 5 4 11 11 C 1.50704 * 109.47272 * 119.99920 * 2 1 3 12 12 O 1.21280 * 120.00199 * 119.99455 * 11 2 1 13 13 N 1.34776 * 119.99769 * 299.99990 * 11 2 1 14 14 C 1.46496 * 120.00117 * 179.97438 * 13 11 2 15 15 H 1.09001 * 110.64086 * 36.69047 * 14 13 11 16 16 C 1.54323 * 110.72247 * 273.54931 * 14 13 11 17 17 N 1.47028 * 107.27034 * 263.65174 * 16 14 13 18 18 C 1.36931 * 125.64567 * 181.01193 * 17 16 14 19 19 H 1.08008 * 119.99989 * 173.91798 * 18 17 16 20 20 C 1.38812 * 120.00554 * 353.91954 * 18 17 16 21 21 N 1.31618 * 119.99633 * 6.84294 * 20 18 17 22 22 Si 1.86802 * 120.00388 * 186.83891 * 20 18 17 23 23 H 1.48497 * 109.46984 * 94.98480 * 22 20 18 24 24 H 1.48497 * 109.47129 * 214.98639 * 22 20 18 25 25 H 1.48503 * 109.46826 * 334.98898 * 22 20 18 26 26 C 1.47421 * 108.70203 * 1.05514 * 17 16 14 27 27 C 1.54914 * 104.83227 * 335.87376 * 26 17 16 28 28 C 1.52992 * 111.00359 * 278.93383 * 27 26 17 29 29 C 1.52998 * 111.03302 * 155.09580 * 27 26 17 30 30 H 1.09002 * 109.47224 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46884 * 300.00163 * 1 2 3 32 32 H 1.08996 * 109.47161 * 60.00075 * 1 2 3 33 33 H 0.96996 * 119.99895 * 265.00706 * 4 2 1 34 34 H 1.08998 * 109.47162 * 60.00276 * 8 7 5 35 35 H 1.09008 * 109.47377 * 179.97438 * 8 7 5 36 36 H 1.09003 * 109.47336 * 299.99731 * 8 7 5 37 37 H 1.09004 * 109.47424 * 59.99315 * 9 7 5 38 38 H 1.08996 * 109.47725 * 180.02562 * 9 7 5 39 39 H 1.09002 * 109.46647 * 300.00033 * 9 7 5 40 40 H 1.09003 * 109.47032 * 60.00458 * 10 7 5 41 41 H 1.08998 * 109.47284 * 179.97438 * 10 7 5 42 42 H 1.08996 * 109.47406 * 300.00009 * 10 7 5 43 43 H 0.96998 * 120.00129 * 359.97438 * 13 11 2 44 44 H 1.09001 * 109.88479 * 23.06536 * 16 14 13 45 45 H 1.09000 * 109.88852 * 144.22969 * 16 14 13 46 46 H 0.96997 * 119.99812 * 180.02562 * 21 20 18 47 47 H 1.08996 * 110.36675 * 217.03504 * 26 17 16 48 48 H 1.09001 * 110.45782 * 94.76289 * 26 17 16 49 49 H 1.09001 * 109.47225 * 172.19601 * 28 27 26 50 50 H 1.09006 * 109.47218 * 292.19805 * 28 27 26 51 51 H 1.08998 * 109.47474 * 52.19560 * 28 27 26 52 52 H 1.08998 * 109.47712 * 307.78422 * 29 27 26 53 53 H 1.09007 * 109.46974 * 67.78755 * 29 27 26 54 54 H 1.09006 * 109.46916 * 187.78148 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8591 1.1586 -2.4115 7 6 2.6489 -0.7289 -3.5877 8 6 2.7011 0.2543 -4.7587 9 6 4.0513 -1.2800 -3.3222 10 6 1.7044 -1.8824 -3.9313 11 6 2.0324 -0.7104 1.2305 12 8 2.7296 -1.6965 1.1193 13 7 1.7068 -0.2499 2.4546 14 6 2.1947 -0.9407 3.6508 15 1 3.2058 -1.3157 3.4924 16 6 1.2420 -2.0891 4.0448 17 7 0.3373 -1.5696 5.0808 18 6 -0.6475 -2.2826 5.7108 19 1 -1.1960 -1.8394 6.5289 20 6 -0.9411 -3.5750 5.2981 21 7 -0.1870 -4.1645 4.3946 22 14 -2.4061 -4.4777 6.0250 23 1 -3.5838 -4.3057 5.1370 24 1 -2.0859 -5.9225 6.1482 25 1 -2.7132 -3.9224 7.3676 26 6 0.6652 -0.1538 5.3282 27 6 2.1433 -0.0065 4.8884 28 6 3.0928 -0.4950 5.9841 29 6 2.4585 1.4389 4.4979 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 2.2490 -1.6318 -1.1525 34 1 3.3743 1.0758 -4.5137 35 1 3.0645 -0.2595 -5.6487 36 1 1.7021 0.6472 -4.9481 37 1 4.0146 -1.9803 -2.4877 38 1 4.4145 -1.7935 -4.2124 39 1 4.7242 -0.4582 -3.0774 40 1 0.7053 -1.4899 -4.1205 41 1 2.0671 -2.3961 -4.8216 42 1 1.6677 -2.5828 -3.0970 43 1 1.1494 0.5390 2.5436 44 1 0.6663 -2.4079 3.1759 45 1 1.8155 -2.9276 4.4400 46 1 -0.3923 -5.0675 4.1059 47 1 0.5594 0.0806 6.3874 48 1 0.0251 0.4955 4.7309 49 1 4.1129 -0.5109 5.6004 50 1 3.0369 0.1779 6.8399 51 1 2.8050 -1.4999 6.2928 52 1 1.7275 1.7857 3.7676 53 1 2.4156 2.0723 5.3840 54 1 3.4573 1.4884 4.0639 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734150633.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:47 Heat of formation + Delta-G solvation = -86.785598 kcal Electronic energy + Delta-G solvation = -31690.759197 eV Core-core repulsion = 27661.752294 eV Total energy + Delta-G solvation = -4029.006903 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.77354 -40.93462 -39.51438 -36.70712 -36.07517 -35.72202 -34.60328 -32.60271 -31.74591 -29.66108 -28.24715 -28.06761 -28.02342 -27.40794 -26.05247 -25.06624 -23.58986 -22.15773 -21.25335 -20.72051 -20.10008 -18.68625 -18.41150 -17.83147 -17.26222 -16.96163 -16.50536 -16.34838 -15.99397 -15.69270 -15.48811 -15.31060 -14.84797 -14.79951 -14.69193 -14.53117 -14.07339 -13.81370 -13.63353 -13.45380 -13.43437 -13.27853 -13.15578 -13.08569 -12.95848 -12.86827 -12.82820 -12.72442 -12.68568 -12.63147 -12.57153 -12.10718 -11.91138 -11.87080 -11.85673 -11.73477 -11.52054 -11.31691 -10.99473 -10.76224 -10.69521 -10.24582 -10.03226 -8.86248 -7.83825 -5.18588 1.44750 1.45822 1.48930 1.54892 1.55236 1.81744 2.37927 2.49590 3.34419 3.45177 3.51916 3.63174 3.74854 3.83168 3.89723 3.96275 3.97933 4.04987 4.07166 4.26668 4.40054 4.52275 4.56839 4.67044 4.70492 4.70690 4.73239 4.81986 4.85271 4.88693 4.93270 4.95096 4.96504 5.01108 5.04501 5.08848 5.13461 5.17882 5.20106 5.26612 5.30203 5.30977 5.35739 5.37830 5.48000 5.56282 5.70497 5.77439 6.19090 6.42843 6.48412 7.09004 7.12482 7.16807 7.79330 8.43792 9.25585 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012824 B = 0.003077 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.942903 B = 9096.440884 C =10337.282901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.134 3.866 3 H 0.122 0.878 4 N -0.708 5.708 5 C 0.523 3.477 6 O -0.574 6.574 7 C -0.083 4.083 8 C -0.123 4.123 9 C -0.140 4.140 10 C -0.140 4.140 11 C 0.510 3.490 12 O -0.572 6.572 13 N -0.693 5.693 14 C 0.139 3.861 15 H 0.079 0.921 16 C 0.194 3.806 17 N -0.619 5.619 18 C -0.236 4.236 19 H 0.085 0.915 20 C -0.066 4.066 21 N -0.948 5.948 22 Si 0.973 3.027 23 H -0.290 1.290 24 H -0.299 1.299 25 H -0.266 1.266 26 C 0.137 3.863 27 C -0.074 4.074 28 C -0.124 4.124 29 C -0.126 4.126 30 H 0.050 0.950 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.411 0.589 34 H 0.051 0.949 35 H 0.086 0.914 36 H 0.051 0.949 37 H 0.058 0.942 38 H 0.091 0.909 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.091 0.909 42 H 0.058 0.942 43 H 0.410 0.590 44 H 0.007 0.993 45 H 0.001 0.999 46 H 0.243 0.757 47 H 0.046 0.954 48 H 0.032 0.968 49 H 0.065 0.935 50 H 0.077 0.923 51 H 0.030 0.970 52 H 0.063 0.937 53 H 0.077 0.923 54 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.340 11.607 -13.027 18.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.025 3.975 3 H 0.139 0.861 4 N -0.361 5.361 5 C 0.311 3.689 6 O -0.453 6.453 7 C -0.086 4.086 8 C -0.181 4.181 9 C -0.197 4.197 10 C -0.198 4.198 11 C 0.296 3.704 12 O -0.452 6.452 13 N -0.344 5.344 14 C 0.033 3.967 15 H 0.097 0.903 16 C 0.067 3.933 17 N -0.345 5.345 18 C -0.365 4.365 19 H 0.102 0.898 20 C -0.259 4.259 21 N -0.597 5.597 22 Si 0.802 3.198 23 H -0.217 1.217 24 H -0.226 1.226 25 H -0.190 1.190 26 C 0.012 3.988 27 C -0.076 4.076 28 C -0.182 4.182 29 C -0.183 4.183 30 H 0.070 0.930 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.248 0.752 34 H 0.070 0.930 35 H 0.105 0.895 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.110 0.890 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.110 0.890 42 H 0.078 0.922 43 H 0.248 0.752 44 H 0.026 0.974 45 H 0.019 0.981 46 H 0.052 0.948 47 H 0.065 0.935 48 H 0.050 0.950 49 H 0.084 0.916 50 H 0.096 0.904 51 H 0.049 0.951 52 H 0.082 0.918 53 H 0.096 0.904 54 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.533 11.559 -13.101 19.026 hybrid contribution -1.105 -1.349 0.656 1.864 sum 6.428 10.210 -12.444 17.333 Atomic orbital electron populations 1.22061 0.92020 1.02757 1.04136 1.20712 0.96112 0.97833 0.82853 0.86052 1.45864 1.66796 1.14991 1.08423 1.21201 0.76056 0.86756 0.84840 1.90654 1.51739 1.17337 1.85584 1.20869 0.98061 0.97355 0.92276 1.21650 1.02272 0.97897 0.96246 1.21888 0.93171 1.01119 1.03534 1.21895 0.98418 0.96146 1.03324 1.20892 0.79773 0.84266 0.85503 1.90679 1.39948 1.27517 1.87020 1.45760 1.52590 1.31609 1.04456 1.22090 0.97002 0.93218 0.84425 0.90316 1.21093 0.89749 0.91913 0.90500 1.44660 1.37860 1.07511 1.44496 1.19432 1.09431 0.95943 1.11677 0.89764 1.25625 1.01747 0.98425 1.00085 1.70226 1.40167 1.13417 1.35920 0.85137 0.79262 0.77264 0.78167 1.21686 1.22648 1.19015 1.21896 0.93086 0.85093 0.98680 1.21977 0.95779 0.96214 0.93593 1.21594 0.98147 1.00670 0.97745 1.21669 1.01967 0.92342 1.02333 0.93044 0.89700 0.90521 0.75164 0.92994 0.89496 0.92935 0.92325 0.89005 0.92658 0.92474 0.89035 0.92244 0.75165 0.97444 0.98092 0.94789 0.93530 0.95007 0.91571 0.90398 0.95077 0.91771 0.90372 0.91621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.74 9.38 71.98 0.68 -3.07 16 2 C 0.13 3.49 2.98 44.25 0.13 3.63 16 3 H 0.12 2.95 7.58 -2.39 -0.02 2.93 16 4 N -0.71 -17.98 4.74 -446.07 -2.11 -20.09 16 5 C 0.52 12.99 6.45 87.66 0.56 13.56 16 6 O -0.57 -17.47 15.64 -3.04 -0.05 -17.52 16 7 C -0.08 -1.48 0.87 -52.93 -0.05 -1.53 16 8 C -0.12 -2.03 7.76 71.98 0.56 -1.47 16 9 C -0.14 -2.17 8.37 71.98 0.60 -1.57 16 10 C -0.14 -2.13 8.37 71.98 0.60 -1.53 16 11 C 0.51 16.46 7.22 87.66 0.63 17.09 16 12 O -0.57 -22.74 15.56 -3.03 -0.05 -22.79 16 13 N -0.69 -21.26 4.47 -436.93 -1.95 -23.21 16 14 C 0.14 5.06 2.50 46.18 0.12 5.18 16 15 H 0.08 3.04 7.60 -2.39 -0.02 3.02 16 16 C 0.19 9.64 4.80 86.73 0.42 10.05 16 17 N -0.62 -30.50 3.38 -691.98 -2.34 -32.84 16 18 C -0.24 -12.94 10.26 84.03 0.86 -12.08 16 19 H 0.08 4.40 7.84 -2.91 -0.02 4.37 16 20 C -0.07 -3.75 5.48 84.86 0.47 -3.28 16 21 N -0.95 -58.15 10.36 21.65 0.22 -57.93 16 22 Si 0.97 46.02 29.56 68.60 2.03 48.05 16 23 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 24 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 25 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 26 C 0.14 5.05 6.15 86.86 0.53 5.58 16 27 C -0.07 -2.22 0.84 -50.79 -0.04 -2.27 16 28 C -0.12 -3.63 8.57 71.98 0.62 -3.02 16 29 C -0.13 -2.60 8.22 71.98 0.59 -2.01 16 30 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.08 1.88 7.56 -2.39 -0.02 1.86 16 32 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.41 10.56 6.63 -92.71 -0.61 9.94 16 34 H 0.05 0.96 8.10 -2.39 -0.02 0.94 16 35 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 36 H 0.05 0.97 8.10 -2.39 -0.02 0.95 16 37 H 0.06 1.00 7.56 -2.38 -0.02 0.98 16 38 H 0.09 1.00 8.14 -2.39 -0.02 0.99 16 39 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.06 0.96 7.56 -2.39 -0.02 0.94 16 43 H 0.41 10.32 6.34 -92.71 -0.59 9.73 16 44 H 0.01 0.43 7.27 -2.39 -0.02 0.41 16 45 H 0.00 0.05 7.55 -2.39 -0.02 0.04 16 46 H 0.24 14.68 8.31 -92.71 -0.77 13.91 16 47 H 0.05 1.67 8.05 -2.39 -0.02 1.65 16 48 H 0.03 1.10 7.98 -2.39 -0.02 1.08 16 49 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 50 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 51 H 0.03 1.14 7.91 -2.39 -0.02 1.12 16 52 H 0.06 1.18 6.39 -2.39 -0.02 1.17 16 53 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 54 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 Total: -1.00 -74.28 421.14 2.71 -71.57 By element: Atomic # 1 Polarization: 31.82 SS G_CDS: -0.33 Total: 31.49 kcal Atomic # 6 Polarization: 15.99 SS G_CDS: 7.28 Total: 23.27 kcal Atomic # 7 Polarization: -127.89 SS G_CDS: -6.18 Total: -134.07 kcal Atomic # 8 Polarization: -40.21 SS G_CDS: -0.09 Total: -40.31 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -74.28 2.71 -71.57 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734150633.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.215 kcal (2) G-P(sol) polarization free energy of solvation -74.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds