Wall clock time and date at job start Sat Apr 11 2020 05:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47030 * 2 1 4 4 N 1.46508 * 109.46952 * 119.99797 * 2 1 3 5 5 C 1.34778 * 119.99764 * 274.99910 * 4 2 1 6 6 O 1.21284 * 120.00122 * 0.02562 * 5 4 2 7 7 C 1.50696 * 120.00095 * 180.02562 * 5 4 2 8 8 C 1.52999 * 109.47358 * 180.02562 * 7 5 4 9 9 C 1.53011 * 109.46990 * 300.00292 * 7 5 4 10 10 C 1.53003 * 109.47054 * 59.99743 * 7 5 4 11 11 C 1.50698 * 109.47442 * 239.99426 * 2 1 3 12 12 O 1.21276 * 120.00467 * 240.00249 * 11 2 1 13 13 N 1.34777 * 119.99643 * 59.99929 * 11 2 1 14 14 C 1.46504 * 119.99961 * 179.97438 * 13 11 2 15 15 H 1.09002 * 110.91351 * 37.44508 * 14 13 11 16 16 C 1.54910 * 111.00501 * 273.54862 * 14 13 11 17 17 N 1.47426 * 104.83209 * 278.93497 * 16 14 13 18 18 C 1.36937 * 125.64487 * 155.84912 * 17 16 14 19 19 H 1.08001 * 119.99600 * 180.02562 * 18 17 16 20 20 C 1.38807 * 120.00345 * 0.02772 * 18 17 16 21 21 N 1.31623 * 120.00215 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99940 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47242 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47053 * 119.99981 * 22 20 18 25 25 H 1.48510 * 109.46679 * 239.99739 * 22 20 18 26 26 C 1.47019 * 108.70209 * 335.87354 * 17 16 14 27 27 C 1.54322 * 107.27223 * 1.05519 * 26 17 16 28 28 C 1.52999 * 110.71656 * 140.55781 * 27 26 17 29 29 C 1.52994 * 110.72232 * 263.65504 * 27 26 17 30 30 H 1.09003 * 109.46803 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47309 * 299.99968 * 1 2 3 32 32 H 1.09004 * 109.46985 * 60.00779 * 1 2 3 33 33 H 0.96993 * 120.00258 * 95.00050 * 4 2 1 34 34 H 1.08999 * 109.46790 * 60.00118 * 8 7 5 35 35 H 1.08999 * 109.47104 * 179.97438 * 8 7 5 36 36 H 1.08993 * 109.46807 * 300.00064 * 8 7 5 37 37 H 1.08995 * 109.46745 * 59.99818 * 9 7 5 38 38 H 1.08999 * 109.47119 * 179.97438 * 9 7 5 39 39 H 1.08996 * 109.46521 * 299.99695 * 9 7 5 40 40 H 1.08995 * 109.46698 * 60.00570 * 10 7 5 41 41 H 1.09004 * 109.46939 * 179.97438 * 10 7 5 42 42 H 1.08996 * 109.47321 * 300.00067 * 10 7 5 43 43 H 0.96996 * 120.00102 * 0.02562 * 13 11 2 44 44 H 1.08998 * 110.36709 * 160.09598 * 16 14 13 45 45 H 1.09005 * 110.36466 * 37.77133 * 16 14 13 46 46 H 0.96993 * 120.00387 * 180.02562 * 21 20 18 47 47 H 1.09001 * 109.88389 * 120.48020 * 26 17 16 48 48 H 1.09004 * 109.87600 * 241.48978 * 26 17 16 49 49 H 1.08997 * 109.47290 * 61.46077 * 28 27 26 50 50 H 1.09000 * 109.46958 * 181.45398 * 28 27 26 51 51 H 1.09000 * 109.47467 * 301.45183 * 28 27 26 52 52 H 1.09003 * 109.47174 * 58.54790 * 29 27 26 53 53 H 1.09010 * 109.47329 * 178.54782 * 29 27 26 54 54 H 1.09004 * 109.47484 * 298.54648 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1470 -0.0182 2.3572 6 8 1.8581 1.1585 2.4117 7 6 2.6498 -0.7283 3.5876 8 6 2.7006 0.2547 4.7589 9 6 1.7062 -1.8826 3.9316 10 6 4.0526 -1.2783 3.3215 11 6 2.0324 -0.7105 -1.2303 12 8 2.7296 -1.6965 -1.1190 13 7 1.7068 -0.2501 -2.4545 14 6 2.1956 -0.9405 -3.6506 15 1 2.2014 -2.0202 -3.5017 16 6 3.6013 -0.4279 -4.0521 17 7 3.3502 0.8236 -4.7896 18 6 4.2389 1.8550 -4.9372 19 1 3.9578 2.7338 -5.4986 20 6 5.5009 1.7710 -4.3654 21 7 5.8433 0.7002 -3.6808 22 14 6.7128 3.1783 -4.5661 23 1 6.0888 4.2577 -5.3727 24 1 7.0812 3.7088 -3.2290 25 1 7.9321 2.6866 -5.2568 26 6 1.9875 0.7813 -5.3399 27 6 1.3560 -0.5554 -4.8972 28 6 -0.1141 -0.3609 -4.5206 29 6 1.4962 -1.6106 -5.9961 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8901 33 1 2.2490 -1.6317 1.1528 34 1 1.7010 0.6461 4.9483 35 1 3.0638 -0.2591 5.6489 36 1 3.3725 1.0772 4.5140 37 1 1.6697 -2.5830 3.0972 38 1 2.0701 -2.3966 4.8213 39 1 0.7070 -1.4908 4.1211 40 1 4.7247 -0.4560 3.0765 41 1 4.4164 -1.7916 4.2116 42 1 4.0160 -1.9788 2.4872 43 1 1.1494 0.5387 -2.5435 44 1 4.1003 -1.1533 -4.6946 45 1 4.2012 -0.2308 -3.1636 46 1 6.7250 0.6416 -3.2809 47 1 1.4038 1.6146 -4.9490 48 1 2.0255 0.8335 -6.4281 49 1 -0.6678 -0.0053 -5.3895 50 1 -0.5324 -1.3106 -4.1871 51 1 -0.1896 0.3715 -3.7169 52 1 2.5513 -1.7554 -6.2283 53 1 1.0672 -2.5521 -5.6528 54 1 0.9700 -1.2763 -6.8903 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734150635.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:52 Heat of formation + Delta-G solvation = -85.998873 kcal Electronic energy + Delta-G solvation = -31917.138486 eV Core-core repulsion = 27888.165699 eV Total energy + Delta-G solvation = -4028.972788 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.74628 -40.92039 -39.50018 -36.70998 -36.06752 -35.71689 -34.61421 -32.61466 -31.72566 -29.67430 -28.24785 -28.05306 -28.02104 -27.42281 -26.00163 -25.02949 -23.60957 -22.14787 -21.24249 -20.72075 -20.04505 -18.72395 -18.42662 -17.79862 -17.25762 -17.05283 -16.65648 -16.25782 -15.83782 -15.64445 -15.56488 -15.20865 -14.87157 -14.78306 -14.61760 -14.56873 -14.08203 -13.84945 -13.66707 -13.55529 -13.41663 -13.26742 -13.08564 -13.05241 -13.01539 -12.91118 -12.86315 -12.66510 -12.64584 -12.61608 -12.54965 -12.08296 -11.92462 -11.87998 -11.80186 -11.74926 -11.43502 -11.35074 -10.97144 -10.80039 -10.72807 -10.24427 -9.97176 -8.85542 -7.77808 -5.22177 1.42051 1.42659 1.48381 1.52771 1.61587 1.84446 2.41409 2.46533 3.32074 3.49637 3.56780 3.63378 3.70967 3.82418 3.89866 3.96754 4.00049 4.07817 4.11565 4.26464 4.42341 4.52391 4.62457 4.68316 4.70622 4.73520 4.78832 4.81565 4.84385 4.89611 4.92425 4.93871 4.94334 5.00323 5.04644 5.11552 5.13892 5.19071 5.21945 5.27891 5.30505 5.31699 5.35326 5.36785 5.47631 5.54588 5.67610 5.82801 6.30709 6.44625 6.52666 7.08329 7.14470 7.20050 7.78498 8.41267 9.22489 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010237 B = 0.003684 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2734.618205 B = 7599.067679 C = 9360.113866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.127 3.873 3 H 0.092 0.908 4 N -0.705 5.705 5 C 0.519 3.481 6 O -0.579 6.579 7 C -0.082 4.082 8 C -0.125 4.125 9 C -0.135 4.135 10 C -0.142 4.142 11 C 0.511 3.489 12 O -0.573 6.573 13 N -0.687 5.687 14 C 0.139 3.861 15 H 0.085 0.915 16 C 0.153 3.847 17 N -0.618 5.618 18 C -0.231 4.231 19 H 0.083 0.917 20 C -0.067 4.067 21 N -0.947 5.947 22 Si 0.973 3.027 23 H -0.262 1.262 24 H -0.298 1.298 25 H -0.294 1.294 26 C 0.136 3.864 27 C -0.072 4.072 28 C -0.126 4.126 29 C -0.126 4.126 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.413 0.587 34 H 0.056 0.944 35 H 0.089 0.911 36 H 0.042 0.958 37 H 0.065 0.935 38 H 0.091 0.909 39 H 0.061 0.939 40 H 0.041 0.959 41 H 0.095 0.905 42 H 0.060 0.940 43 H 0.408 0.592 44 H -0.015 1.015 45 H 0.068 0.932 46 H 0.241 0.759 47 H 0.034 0.966 48 H 0.025 0.975 49 H 0.075 0.925 50 H 0.072 0.928 51 H 0.059 0.941 52 H 0.031 0.969 53 H 0.073 0.927 54 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.478 -7.120 10.849 20.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.018 3.982 3 H 0.110 0.890 4 N -0.358 5.358 5 C 0.307 3.693 6 O -0.459 6.459 7 C -0.085 4.085 8 C -0.182 4.182 9 C -0.193 4.193 10 C -0.199 4.199 11 C 0.297 3.703 12 O -0.452 6.452 13 N -0.338 5.338 14 C 0.033 3.967 15 H 0.103 0.897 16 C 0.027 3.973 17 N -0.344 5.344 18 C -0.360 4.360 19 H 0.101 0.899 20 C -0.260 4.260 21 N -0.598 5.598 22 Si 0.802 3.198 23 H -0.187 1.187 24 H -0.225 1.225 25 H -0.222 1.222 26 C 0.011 3.989 27 C -0.073 4.073 28 C -0.183 4.183 29 C -0.184 4.184 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.108 0.892 33 H 0.251 0.749 34 H 0.075 0.925 35 H 0.108 0.892 36 H 0.061 0.939 37 H 0.084 0.916 38 H 0.110 0.890 39 H 0.080 0.920 40 H 0.061 0.939 41 H 0.114 0.886 42 H 0.079 0.921 43 H 0.245 0.755 44 H 0.003 0.997 45 H 0.086 0.914 46 H 0.051 0.949 47 H 0.052 0.948 48 H 0.043 0.957 49 H 0.094 0.906 50 H 0.091 0.909 51 H 0.078 0.922 52 H 0.051 0.949 53 H 0.092 0.908 54 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.015 -6.905 10.958 19.829 hybrid contribution 1.526 0.862 -0.548 1.836 sum -13.489 -6.044 10.410 18.079 Atomic orbital electron populations 1.22049 0.90077 1.03956 1.04205 1.20738 0.97582 0.96788 0.83093 0.88997 1.45790 1.66902 1.14938 1.08155 1.21298 0.76067 0.86739 0.85173 1.90663 1.51855 1.17590 1.85748 1.20874 0.97912 0.97669 0.92027 1.21661 1.02281 0.97832 0.96435 1.21871 0.98224 0.95678 1.03504 1.21903 0.93491 1.00870 1.03662 1.20787 0.79618 0.84406 0.85450 1.90655 1.39039 1.28527 1.87028 1.45647 1.52159 1.31509 1.04466 1.22179 0.94582 0.95827 0.84148 0.89692 1.21960 0.93347 0.85960 0.96052 1.44689 1.11786 1.16800 1.61126 1.19467 0.93470 0.96006 1.27036 0.89893 1.25574 0.99500 1.00013 1.00895 1.70112 1.19823 1.29186 1.40629 0.85081 0.78917 0.79011 0.76804 1.18665 1.22512 1.22161 1.21680 0.85293 0.95695 0.96245 1.21809 0.96333 0.95246 0.93900 1.21716 0.91888 1.02602 1.02104 1.21693 1.01076 0.97988 0.97638 0.90514 0.91190 0.89178 0.74912 0.92532 0.89230 0.93918 0.91622 0.89009 0.91989 0.93931 0.88603 0.92135 0.75471 0.99702 0.91426 0.94873 0.94795 0.95717 0.90582 0.90899 0.92231 0.94928 0.90761 0.90452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 9.38 71.98 0.68 -2.28 16 2 C 0.13 3.64 2.98 44.24 0.13 3.78 16 3 H 0.09 3.06 7.58 -2.39 -0.02 3.05 16 4 N -0.70 -19.26 4.74 -446.09 -2.11 -21.37 16 5 C 0.52 14.59 6.45 87.66 0.56 15.16 16 6 O -0.58 -20.39 15.65 -3.04 -0.05 -20.44 16 7 C -0.08 -1.65 0.87 -52.92 -0.05 -1.70 16 8 C -0.12 -2.42 7.76 71.98 0.56 -1.86 16 9 C -0.14 -1.90 8.37 71.99 0.60 -1.30 16 10 C -0.14 -2.78 8.37 71.98 0.60 -2.18 16 11 C 0.51 17.52 7.22 87.66 0.63 18.15 16 12 O -0.57 -23.43 15.58 -3.02 -0.05 -23.47 16 13 N -0.69 -22.42 4.57 -435.96 -1.99 -24.41 16 14 C 0.14 5.10 2.56 46.38 0.12 5.22 16 15 H 0.09 3.16 7.63 -2.39 -0.02 3.14 16 16 C 0.15 7.71 5.27 86.86 0.46 8.16 16 17 N -0.62 -31.01 3.39 -691.99 -2.35 -33.36 16 18 C -0.23 -12.89 10.27 84.03 0.86 -12.03 16 19 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 20 C -0.07 -3.91 5.49 84.86 0.47 -3.44 16 21 N -0.95 -58.91 10.09 21.65 0.22 -58.69 16 22 Si 0.97 47.11 29.55 68.60 2.03 49.14 16 23 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 24 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 25 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 26 C 0.14 5.14 6.41 86.73 0.56 5.70 16 27 C -0.07 -2.13 0.80 -51.00 -0.04 -2.17 16 28 C -0.13 -2.56 8.15 71.98 0.59 -1.97 16 29 C -0.13 -3.41 8.44 71.98 0.61 -2.81 16 30 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.09 1.50 7.56 -2.39 -0.02 1.48 16 33 H 0.41 10.58 6.63 -92.71 -0.61 9.97 16 34 H 0.06 1.15 8.10 -2.39 -0.02 1.13 16 35 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.04 0.99 8.10 -2.39 -0.02 0.97 16 37 H 0.06 0.88 7.56 -2.39 -0.02 0.87 16 38 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.06 0.87 8.14 -2.39 -0.02 0.86 16 40 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.06 1.24 7.56 -2.39 -0.02 1.22 16 43 H 0.41 11.50 6.24 -92.71 -0.58 10.92 16 44 H -0.01 -0.83 7.73 -2.39 -0.02 -0.84 16 45 H 0.07 4.06 5.87 -2.38 -0.01 4.05 16 46 H 0.24 14.82 8.31 -92.71 -0.77 14.05 16 47 H 0.03 1.22 7.82 -2.39 -0.02 1.20 16 48 H 0.02 0.95 7.85 -2.38 -0.02 0.93 16 49 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 50 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 51 H 0.06 1.14 6.21 -2.39 -0.01 1.13 16 52 H 0.03 1.07 7.47 -2.39 -0.02 1.06 16 53 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 54 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 Total: -1.00 -76.84 419.30 2.72 -74.12 By element: Atomic # 1 Polarization: 34.37 SS G_CDS: -0.31 Total: 34.06 kcal Atomic # 6 Polarization: 17.10 SS G_CDS: 7.34 Total: 24.43 kcal Atomic # 7 Polarization: -131.60 SS G_CDS: -6.23 Total: -137.83 kcal Atomic # 8 Polarization: -43.82 SS G_CDS: -0.09 Total: -43.91 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.14 kcal Total: -76.84 2.72 -74.12 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734150635.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.880 kcal (2) G-P(sol) polarization free energy of solvation -76.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds