Wall clock time and date at job start Sat Apr 11 2020 05:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46503 * 109.47148 * 2 1 4 4 C 1.37101 * 120.00051 * 86.04363 * 3 2 1 5 5 H 1.07996 * 119.99833 * 209.81358 * 4 3 2 6 6 C 1.38950 * 120.00044 * 29.81444 * 4 3 2 7 7 N 1.31410 * 119.99984 * 39.54745 * 6 4 3 8 8 Si 1.86800 * 119.99906 * 219.54398 * 6 4 3 9 9 H 1.48495 * 109.47071 * 180.02562 * 8 6 4 10 10 H 1.48500 * 109.47047 * 60.00001 * 8 6 4 11 11 H 1.48503 * 109.47043 * 300.00171 * 8 6 4 12 12 C 1.34772 * 119.99344 * 266.04234 * 3 2 1 13 13 O 1.21301 * 119.99558 * 180.02562 * 12 3 2 14 14 C 1.50701 * 120.00553 * 0.02562 * 12 3 2 15 15 C 1.52999 * 109.47251 * 179.97438 * 14 12 3 16 16 H 1.08999 * 109.49913 * 54.93185 * 15 14 12 17 17 C 1.53040 * 109.49905 * 175.00009 * 15 14 12 18 18 C 1.53038 * 109.54049 * 181.31840 * 17 15 14 19 19 C 1.53201 * 109.31059 * 298.63599 * 18 17 15 20 20 N 1.46919 * 108.77678 * 54.63083 * 19 18 17 21 21 C 1.34783 * 120.63038 * 126.37246 * 20 19 18 22 22 O 1.21583 * 120.00354 * 184.28855 * 21 20 19 23 23 N 1.34778 * 119.99728 * 4.28626 * 21 20 19 24 24 C 1.46495 * 119.99855 * 184.72062 * 23 21 20 25 25 C 1.52999 * 109.47115 * 180.02562 * 24 23 21 26 26 C 1.53002 * 109.47356 * 64.99487 * 25 24 23 27 27 C 1.52998 * 109.47409 * 184.99580 * 25 24 23 28 28 C 1.46924 * 118.74394 * 306.39730 * 20 19 18 29 29 H 1.08995 * 109.47470 * 300.00422 * 1 2 3 30 30 H 1.08998 * 109.46914 * 60.00620 * 1 2 3 31 31 H 1.09005 * 109.47105 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47853 * 239.99374 * 2 1 3 33 33 H 1.09011 * 109.47019 * 119.99739 * 2 1 3 34 34 H 0.97001 * 119.99970 * 4.55982 * 7 6 4 35 35 H 1.08999 * 109.46562 * 299.99591 * 14 12 3 36 36 H 1.08994 * 109.47051 * 59.99478 * 14 12 3 37 37 H 1.09002 * 109.45544 * 301.33728 * 17 15 14 38 38 H 1.08993 * 109.45905 * 61.30427 * 17 15 14 39 39 H 1.08998 * 109.49953 * 58.57926 * 18 17 15 40 40 H 1.08998 * 109.49948 * 178.64942 * 18 17 15 41 41 H 1.08995 * 109.58796 * 174.42395 * 19 18 17 42 42 H 1.09002 * 109.57901 * 294.84531 * 19 18 17 43 43 H 0.97005 * 119.99823 * 4.71474 * 23 21 20 44 44 H 1.09006 * 109.46786 * 299.99561 * 24 23 21 45 45 H 1.09002 * 109.47454 * 60.00037 * 24 23 21 46 46 H 1.09004 * 109.47196 * 305.00129 * 25 24 23 47 47 H 1.09000 * 109.47094 * 300.00422 * 26 25 24 48 48 H 1.09000 * 109.46904 * 60.00048 * 26 25 24 49 49 H 1.08998 * 109.47326 * 179.97438 * 26 25 24 50 50 H 1.09005 * 109.46961 * 60.00165 * 27 25 24 51 51 H 1.08998 * 109.47622 * 179.97438 * 27 25 24 52 52 H 1.09000 * 109.47050 * 300.00074 * 27 25 24 53 53 H 1.09004 * 109.58726 * 293.82055 * 28 20 19 54 54 H 1.08998 * 109.59199 * 173.39351 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1696 2.0549 1.1845 5 1 2.0524 3.1280 1.2141 6 6 2.4736 1.3568 2.3468 7 7 3.3235 0.3552 2.3085 8 14 1.6743 1.8421 3.9639 9 1 2.1625 0.9490 5.0451 10 1 0.1995 1.7155 3.8447 11 1 2.0258 3.2482 4.2875 12 6 2.3188 1.9896 -1.1645 13 8 2.7236 3.1331 -1.1645 14 6 2.1520 1.2493 -2.4665 15 6 2.5586 2.1601 -3.6267 16 1 3.5711 2.5288 -3.4622 17 6 2.5089 1.3711 -4.9371 18 6 2.9470 2.2720 -6.0940 19 6 1.9828 3.4573 -6.2063 20 7 1.9144 4.1362 -4.9052 21 6 2.1453 5.4606 -4.8086 22 8 2.1628 5.9968 -3.7176 23 7 2.3570 6.1905 -5.9217 24 6 2.7100 7.6081 -5.8118 25 6 2.8931 8.1980 -7.2116 26 6 1.5565 8.1702 -7.9557 27 6 3.3824 9.6430 -7.0961 28 6 1.5901 3.3440 -3.7110 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.7885 0.1451 1.4836 35 1 2.7837 0.3610 -2.4628 36 1 1.1097 0.9535 -2.5853 37 1 3.1790 0.5139 -4.8705 38 1 1.4910 1.0234 -5.1132 39 1 3.9557 2.6402 -5.9065 40 1 2.9343 1.7028 -7.0234 41 1 2.3456 4.1530 -6.9629 42 1 0.9920 3.0971 -6.4831 43 1 2.2756 5.7772 -6.7955 44 1 1.9128 8.1419 -5.2944 45 1 3.6388 7.7088 -5.2503 46 1 3.6271 7.6086 -7.7611 47 1 1.2079 7.1407 -8.0380 48 1 0.8225 8.7595 -7.4062 49 1 1.6869 8.5909 -8.9527 50 1 4.3347 9.6628 -6.5660 51 1 3.5133 10.0632 -8.0932 52 1 2.6484 10.2324 -6.5466 53 1 0.5672 2.9747 -3.7843 54 1 1.6937 3.9650 -2.8212 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078097889.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:46 Heat of formation + Delta-G solvation = -99.337708 kcal Electronic energy + Delta-G solvation = -31122.631509 eV Core-core repulsion = 27093.080306 eV Total energy + Delta-G solvation = -4029.551203 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.63136 -40.62281 -38.86212 -37.59103 -37.09418 -35.11405 -34.11433 -33.64684 -32.69828 -31.17821 -29.04390 -28.06809 -27.53819 -26.30203 -25.58801 -24.10810 -23.45049 -21.91051 -21.49898 -20.65546 -20.43288 -19.20231 -18.97072 -17.71685 -17.52014 -16.93917 -16.72135 -16.37801 -16.05875 -15.65631 -15.59108 -15.44640 -15.36187 -14.95176 -14.63359 -14.58033 -14.39060 -14.13406 -14.10518 -13.81941 -13.60039 -13.35034 -13.31388 -13.11300 -12.93410 -12.81657 -12.69482 -12.59126 -12.14618 -12.05597 -12.01800 -11.95869 -11.90747 -11.83117 -11.79687 -11.69990 -11.64465 -11.48859 -11.19820 -10.79705 -10.28854 -10.17798 -9.71048 -9.48214 -8.84916 -5.97851 1.47063 1.50912 1.59370 1.78946 2.05919 2.08930 2.39616 2.81920 2.92905 3.07950 3.72621 3.76309 3.79743 3.87080 3.92231 4.05101 4.09713 4.10845 4.16991 4.28611 4.35637 4.47505 4.55183 4.56650 4.60469 4.63675 4.66788 4.72795 4.76805 4.77970 4.81039 4.91498 4.95778 4.97469 4.97487 5.00992 5.08782 5.12264 5.15998 5.18826 5.30584 5.37024 5.38761 5.40067 5.47966 5.50673 5.56055 5.84451 5.93218 5.95630 6.65321 6.96670 7.03654 7.48514 7.53752 8.05496 8.38740 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015437 B = 0.002619 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.389599 B =10690.259146 C =11926.814532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.087 3.913 3 N -0.463 5.463 4 C -0.443 4.443 5 H 0.040 0.960 6 C -0.010 4.010 7 N -0.862 5.862 8 Si 1.104 2.896 9 H -0.270 1.270 10 H -0.265 1.265 11 H -0.284 1.284 12 C 0.429 3.571 13 O -0.624 6.624 14 C -0.112 4.112 15 C -0.073 4.073 16 H 0.036 0.964 17 C -0.107 4.107 18 C -0.129 4.129 19 C 0.104 3.896 20 N -0.625 5.625 21 C 0.691 3.309 22 O -0.644 6.644 23 N -0.728 5.728 24 C 0.139 3.861 25 C -0.096 4.096 26 C -0.146 4.146 27 C -0.145 4.145 28 C 0.133 3.867 29 H 0.036 0.964 30 H 0.057 0.943 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.063 0.937 34 H 0.264 0.736 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.048 0.952 40 H 0.115 0.885 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.410 0.590 44 H 0.047 0.953 45 H 0.043 0.957 46 H 0.090 0.910 47 H 0.058 0.942 48 H 0.048 0.952 49 H 0.075 0.925 50 H 0.053 0.947 51 H 0.078 0.922 52 H 0.053 0.947 53 H 0.071 0.929 54 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.993 2.033 -26.812 27.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.036 4.036 3 N -0.183 5.183 4 C -0.570 4.570 5 H 0.058 0.942 6 C -0.216 4.216 7 N -0.494 5.494 8 Si 0.925 3.075 9 H -0.195 1.195 10 H -0.190 1.190 11 H -0.210 1.210 12 C 0.220 3.780 13 O -0.511 6.511 14 C -0.153 4.153 15 C -0.093 4.093 16 H 0.055 0.945 17 C -0.145 4.145 18 C -0.167 4.167 19 C -0.017 4.017 20 N -0.361 5.361 21 C 0.392 3.608 22 O -0.526 6.526 23 N -0.388 5.388 24 C 0.014 3.986 25 C -0.115 4.115 26 C -0.203 4.203 27 C -0.203 4.203 28 C 0.009 3.991 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.121 0.879 36 H 0.125 0.875 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.067 0.933 40 H 0.133 0.867 41 H 0.115 0.885 42 H 0.112 0.888 43 H 0.250 0.750 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.109 0.891 47 H 0.077 0.923 48 H 0.067 0.933 49 H 0.094 0.906 50 H 0.072 0.928 51 H 0.097 0.903 52 H 0.072 0.928 53 H 0.089 0.911 54 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.880 2.538 -24.448 25.059 hybrid contribution 0.568 0.711 -1.009 1.359 sum -4.312 3.249 -25.457 26.023 Atomic orbital electron populations 1.21991 0.94652 1.02664 1.01454 1.21735 0.95760 0.83264 1.02838 1.43948 1.56241 1.13255 1.04870 1.19870 1.56068 0.93458 0.87572 0.94217 1.27452 0.93908 0.95272 1.04940 1.70903 1.17544 1.31908 1.29030 0.83105 0.76758 0.76140 0.71529 1.19492 1.18992 1.20988 1.21524 0.81095 0.88262 0.87168 1.90548 1.51488 1.21188 1.87874 1.21608 1.04477 0.98876 0.90320 1.21121 0.98135 0.94647 0.95378 0.94532 1.21594 1.03622 0.97757 0.91496 1.21918 0.98339 0.96338 1.00086 1.22029 1.01646 0.95278 0.82791 1.47356 1.73441 1.05300 1.10033 1.16270 0.77942 0.82200 0.84402 1.90948 1.60733 1.72056 1.28842 1.45082 1.75629 1.10990 1.07053 1.21352 0.99191 0.79367 0.98675 1.21312 0.99354 0.97790 0.93024 1.21860 0.95617 1.02177 1.00680 1.21777 1.01061 0.94434 1.03040 1.21497 0.97471 0.92628 0.87472 0.94496 0.92382 0.89154 0.89283 0.91881 0.92657 0.87908 0.87507 0.90199 0.89271 0.93269 0.86653 0.88506 0.88803 0.74983 0.93488 0.93835 0.89147 0.92324 0.93280 0.90577 0.92768 0.90283 0.92764 0.91053 0.92523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.16 10.22 71.98 0.74 -4.42 16 2 C 0.09 3.61 5.43 86.38 0.47 4.08 16 3 N -0.46 -24.32 2.43 -635.52 -1.55 -25.87 16 4 C -0.44 -26.86 8.81 84.04 0.74 -26.12 16 5 H 0.04 2.73 7.75 -2.91 -0.02 2.71 16 6 C -0.01 -0.55 4.55 84.93 0.39 -0.16 16 7 N -0.86 -49.35 12.22 21.66 0.26 -49.09 16 8 Si 1.10 50.02 30.05 68.60 2.06 52.08 16 9 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 10 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 C 0.43 21.90 7.37 87.66 0.65 22.55 16 13 O -0.62 -38.94 13.77 -3.10 -0.04 -38.98 16 14 C -0.11 -3.89 3.67 29.85 0.11 -3.78 16 15 C -0.07 -2.36 1.98 -10.72 -0.02 -2.38 16 16 H 0.04 1.48 7.95 -2.39 -0.02 1.47 16 17 C -0.11 -2.07 5.17 30.62 0.16 -1.91 16 18 C -0.13 -1.98 6.08 30.67 0.19 -1.80 16 19 C 0.10 1.70 6.36 86.37 0.55 2.25 16 20 N -0.62 -18.71 2.97 -836.90 -2.49 -21.20 16 21 C 0.69 24.54 8.30 179.05 1.49 26.02 16 22 O -0.64 -31.87 15.76 -3.98 -0.06 -31.94 16 23 N -0.73 -17.37 5.16 -478.54 -2.47 -19.84 16 24 C 0.14 3.18 5.07 86.38 0.44 3.61 16 25 C -0.10 -1.28 2.96 -10.79 -0.03 -1.31 16 26 C -0.15 -1.59 9.07 71.98 0.65 -0.93 16 27 C -0.15 -1.78 9.19 71.98 0.66 -1.12 16 28 C 0.13 4.84 5.39 86.36 0.47 5.31 16 29 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.06 1.83 7.72 -2.39 -0.02 1.81 16 31 H 0.09 2.39 8.14 -2.38 -0.02 2.37 16 32 H 0.09 3.00 6.30 -2.39 -0.02 2.99 16 33 H 0.06 2.93 5.62 -2.38 -0.01 2.92 16 34 H 0.26 15.44 7.95 -92.71 -0.74 14.70 16 35 H 0.10 3.09 7.41 -2.39 -0.02 3.07 16 36 H 0.11 3.05 7.69 -2.39 -0.02 3.03 16 37 H 0.08 1.36 8.14 -2.39 -0.02 1.35 16 38 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.10 1.06 5.71 -2.39 -0.01 1.05 16 42 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.41 6.33 5.22 -92.70 -0.48 5.85 16 44 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 45 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 47 H 0.06 0.58 7.18 -2.39 -0.02 0.56 16 48 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 49 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 50 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 51 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 52 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 53 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 54 H 0.06 2.88 4.96 -2.39 -0.01 2.87 16 Total: -1.00 -90.96 415.04 3.77 -87.19 By element: Atomic # 1 Polarization: 27.31 SS G_CDS: 0.42 Total: 27.73 kcal Atomic # 6 Polarization: 12.27 SS G_CDS: 7.63 Total: 19.90 kcal Atomic # 7 Polarization: -109.75 SS G_CDS: -6.24 Total: -115.99 kcal Atomic # 8 Polarization: -70.81 SS G_CDS: -0.11 Total: -70.92 kcal Atomic # 14 Polarization: 50.02 SS G_CDS: 2.06 Total: 52.08 kcal Total: -90.96 3.77 -87.19 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078097889.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.148 kcal (2) G-P(sol) polarization free energy of solvation -90.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds