Wall clock time and date at job start Sat Apr 11 2020 05:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46492 * 109.47316 * 2 1 4 4 C 1.46495 * 120.00349 * 269.99959 * 3 2 1 5 5 C 1.52991 * 109.47288 * 270.00113 * 4 3 2 6 6 C 1.34781 * 119.99791 * 90.00034 * 3 2 1 7 7 O 1.21279 * 119.99657 * 180.02562 * 6 3 2 8 8 C 1.50698 * 120.00301 * 359.97438 * 6 3 2 9 9 C 1.53001 * 109.47315 * 180.02562 * 8 6 3 10 10 C 1.50700 * 109.47193 * 180.02562 * 9 8 6 11 11 O 1.21283 * 119.99638 * 359.97438 * 10 9 8 12 12 N 1.34770 * 120.00068 * 180.02562 * 10 9 8 13 13 C 1.46503 * 120.00084 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47208 * 179.97438 * 13 12 10 15 15 C 1.53352 * 109.41800 * 295.12674 * 14 13 12 16 16 C 1.53190 * 109.15070 * 178.67720 * 15 14 13 17 17 N 1.46925 * 108.89356 * 54.57285 * 16 15 14 18 18 C 1.36935 * 120.62758 * 126.30089 * 17 16 15 19 19 H 1.08001 * 120.00088 * 332.62829 * 18 17 16 20 20 C 1.38817 * 119.99782 * 152.62208 * 18 17 16 21 21 N 1.31618 * 119.99923 * 159.36242 * 20 18 17 22 22 Si 1.86801 * 120.00195 * 339.36341 * 20 18 17 23 23 H 1.48501 * 109.47054 * 92.89675 * 22 20 18 24 24 H 1.48497 * 109.47324 * 212.90179 * 22 20 18 25 25 H 1.48501 * 109.46722 * 332.89954 * 22 20 18 26 26 C 1.46926 * 118.73822 * 306.31916 * 17 16 15 27 27 C 1.53037 * 109.46053 * 174.99519 * 14 13 12 28 28 H 1.09000 * 109.47045 * 300.00097 * 1 2 3 29 29 H 1.08998 * 109.47241 * 60.00010 * 1 2 3 30 30 H 1.09002 * 109.47082 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47045 * 239.99903 * 2 1 3 32 32 H 1.09007 * 109.46553 * 120.00364 * 2 1 3 33 33 H 1.09000 * 109.46921 * 30.00100 * 4 3 2 34 34 H 1.09003 * 109.47425 * 149.99378 * 4 3 2 35 35 H 1.09004 * 109.47690 * 59.99818 * 5 4 3 36 36 H 1.09003 * 109.47659 * 179.97438 * 5 4 3 37 37 H 1.09000 * 109.47130 * 299.99860 * 5 4 3 38 38 H 1.09005 * 109.47080 * 59.99958 * 8 6 3 39 39 H 1.08997 * 109.47152 * 300.00631 * 8 6 3 40 40 H 1.08996 * 109.47061 * 60.00021 * 9 8 6 41 41 H 1.09008 * 109.46669 * 300.00098 * 9 8 6 42 42 H 0.97004 * 120.00152 * 359.97438 * 12 10 9 43 43 H 1.08996 * 109.47010 * 59.99318 * 13 12 10 44 44 H 1.08996 * 109.46600 * 299.99324 * 13 12 10 45 45 H 1.09008 * 109.45887 * 55.02318 * 14 13 12 46 46 H 1.09004 * 109.68561 * 58.70472 * 15 14 13 47 47 H 1.09004 * 109.47287 * 298.51133 * 15 14 13 48 48 H 1.09004 * 109.58215 * 294.71811 * 16 15 14 49 49 H 1.08997 * 109.58828 * 174.43980 * 16 15 14 50 50 H 0.96999 * 119.99917 * 180.02562 * 21 20 18 51 51 H 1.09002 * 109.58248 * 173.39705 * 26 17 16 52 52 H 1.08994 * 109.58922 * 293.68210 * 26 17 16 53 53 H 1.09003 * 109.49698 * 61.43697 * 27 14 13 54 54 H 1.08994 * 109.52761 * 301.35110 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0718 -1.2686 5 6 3.7075 1.8313 -1.7103 6 6 2.2430 2.0164 1.1673 7 8 2.6469 3.1600 1.1672 8 6 1.9913 1.3063 2.4724 9 6 2.3223 2.2438 3.6353 10 6 2.0711 1.5334 4.9404 11 8 1.6667 0.3899 4.9403 12 7 2.2949 2.1690 6.1076 13 6 2.0502 1.4785 7.3763 14 6 2.3813 2.4160 8.5393 15 6 3.8819 2.7318 8.5282 16 6 4.2008 3.6966 9.6746 17 7 3.7137 3.1170 10.9337 18 6 4.5532 2.9722 12.0058 19 1 5.6148 2.8517 11.8481 20 6 4.0396 2.9805 13.2955 21 7 4.7313 2.4519 14.2827 22 14 2.3669 3.7417 13.6299 23 1 1.3204 2.6909 13.5523 24 1 2.3607 4.3474 14.9857 25 1 2.0897 4.7920 12.6173 26 6 2.3089 2.6953 11.0204 27 6 2.0083 1.7404 9.8608 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.5818 1.6877 -2.0283 34 1 2.0955 3.1410 -1.1383 35 1 3.8745 0.7621 -1.8407 36 1 3.8891 2.3448 -2.6545 37 1 4.3883 2.2154 -0.9507 38 1 2.6211 0.4185 2.5303 39 1 0.9432 1.0125 2.5299 40 1 1.6921 3.1312 3.5772 41 1 3.3703 2.5379 3.5779 42 1 2.6179 3.0836 6.1076 43 1 2.6805 0.5912 7.4345 44 1 1.0023 1.1842 7.4335 45 1 1.8153 3.3415 8.4321 46 1 4.1531 3.1929 7.5784 47 1 4.4482 1.8099 8.6604 48 1 3.7064 4.6516 9.4966 49 1 5.2784 3.8488 9.7350 50 1 4.3723 2.4574 15.1838 51 1 2.1388 2.1842 11.9681 52 1 1.6604 3.5688 10.9547 53 1 2.5922 0.8278 9.9803 54 1 0.9463 1.4951 9.8576 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088390139.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:52 Heat of formation + Delta-G solvation = -92.103433 kcal Electronic energy + Delta-G solvation = -29636.233085 eV Core-core repulsion = 25606.995584 eV Total energy + Delta-G solvation = -4029.237501 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.30645 -40.61178 -39.50108 -37.25148 -36.48801 -34.51946 -34.21228 -32.96755 -32.54226 -31.86409 -30.45824 -28.79921 -26.79152 -25.33743 -24.46896 -24.27523 -23.45835 -22.69249 -21.36903 -20.75580 -19.82913 -18.84277 -18.53915 -17.55777 -17.41272 -17.23103 -16.93760 -16.65487 -16.20351 -15.90281 -15.44615 -15.23179 -15.15383 -14.87120 -14.83572 -14.69171 -14.49838 -14.34837 -14.12833 -13.87833 -13.64989 -13.51853 -13.45796 -13.33995 -13.12000 -12.90004 -12.79403 -12.55014 -12.53637 -12.29065 -12.24442 -12.11592 -11.91253 -11.87466 -11.73034 -11.58313 -11.30659 -11.18733 -10.90151 -10.84024 -10.65027 -10.04190 -9.72260 -8.91247 -8.15976 -5.47028 1.30406 1.41563 1.50875 1.58710 1.65629 1.91030 2.33591 2.42334 3.06830 3.38185 3.46534 3.80220 3.82357 3.87797 3.94902 4.03798 4.06972 4.11521 4.21286 4.24042 4.39499 4.45265 4.46271 4.51051 4.55550 4.58887 4.61556 4.65212 4.75596 4.76402 4.79010 4.84435 4.90218 4.93577 4.95483 5.00795 5.02050 5.03866 5.11700 5.18221 5.22329 5.27754 5.28901 5.36945 5.44733 5.61367 5.62339 5.88204 6.13387 6.35475 6.57502 6.94225 7.13712 7.26191 7.64885 8.04835 9.04100 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.029362 B = 0.001724 C = 0.001680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.381542 B =16236.702057 C =16664.720175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.098 3.902 3 N -0.612 5.612 4 C 0.107 3.893 5 C -0.162 4.162 6 C 0.512 3.488 7 O -0.579 6.579 8 C -0.118 4.118 9 C -0.119 4.119 10 C 0.514 3.486 11 O -0.582 6.582 12 N -0.717 5.717 13 C 0.135 3.865 14 C -0.081 4.081 15 C -0.118 4.118 16 C 0.141 3.859 17 N -0.622 5.622 18 C -0.248 4.248 19 H 0.048 0.952 20 C -0.039 4.039 21 N -0.959 5.959 22 Si 0.950 3.050 23 H -0.274 1.274 24 H -0.313 1.313 25 H -0.259 1.259 26 C 0.119 3.881 27 C -0.120 4.120 28 H 0.047 0.953 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.035 0.965 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.414 0.586 43 H 0.054 0.946 44 H 0.067 0.933 45 H 0.088 0.912 46 H 0.089 0.911 47 H 0.046 0.954 48 H 0.040 0.960 49 H 0.050 0.950 50 H 0.261 0.739 51 H 0.046 0.954 52 H 0.037 0.963 53 H 0.052 0.948 54 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.169 -3.186 -35.256 36.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.024 4.024 3 N -0.344 5.344 4 C -0.016 4.016 5 C -0.220 4.220 6 C 0.302 3.698 7 O -0.459 6.459 8 C -0.158 4.158 9 C -0.159 4.159 10 C 0.302 3.698 11 O -0.463 6.463 12 N -0.369 5.369 13 C 0.011 3.989 14 C -0.099 4.099 15 C -0.157 4.157 16 C 0.016 3.984 17 N -0.347 5.347 18 C -0.378 4.378 19 H 0.066 0.934 20 C -0.233 4.233 21 N -0.606 5.606 22 Si 0.779 3.221 23 H -0.201 1.201 24 H -0.242 1.242 25 H -0.183 1.183 26 C -0.005 4.005 27 C -0.160 4.160 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.118 0.882 32 H 0.105 0.895 33 H 0.119 0.881 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.054 0.946 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.127 0.873 41 H 0.125 0.875 42 H 0.251 0.749 43 H 0.072 0.928 44 H 0.085 0.915 45 H 0.107 0.893 46 H 0.108 0.892 47 H 0.065 0.935 48 H 0.058 0.942 49 H 0.069 0.931 50 H 0.070 0.930 51 H 0.064 0.936 52 H 0.054 0.946 53 H 0.071 0.929 54 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.223 -3.420 -35.129 36.746 hybrid contribution -0.106 0.611 1.127 1.286 sum -10.329 -2.809 -34.002 35.647 Atomic orbital electron populations 1.22187 0.95217 1.03312 1.02070 1.21831 0.94939 0.80819 1.04850 1.48183 1.65165 1.15366 1.05702 1.21514 0.97493 0.97766 0.84788 1.22075 0.95992 1.02503 1.01447 1.20931 0.76321 0.86130 0.86442 1.90684 1.47589 1.19547 1.88095 1.21383 1.05358 0.99272 0.89822 1.21339 1.05650 0.99418 0.89470 1.20962 0.76303 0.86314 0.86260 1.90685 1.47630 1.19562 1.88375 1.45981 1.67477 1.18265 1.05190 1.21257 1.00811 0.94950 0.81883 1.21239 0.96859 0.98925 0.92914 1.22012 0.95409 0.99665 0.98637 1.21131 0.97947 0.94612 0.84709 1.44500 1.07505 1.71606 1.11039 1.18871 0.90998 1.42679 0.85226 0.93383 1.25942 1.01734 1.00361 0.95300 1.69979 1.41654 1.47801 1.01126 0.85858 0.80862 0.79565 0.75819 1.20109 1.24188 1.18342 1.21397 0.85142 0.96184 0.97815 1.21878 1.01416 0.98398 0.94267 0.93401 0.92157 0.89939 0.88193 0.89509 0.88121 0.91746 0.91559 0.90312 0.94616 0.87674 0.87635 0.87325 0.87526 0.74862 0.92793 0.91515 0.89327 0.89246 0.93529 0.94246 0.93105 0.93047 0.93616 0.94562 0.92943 0.89917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.09 10.24 71.98 0.74 -0.35 16 2 C 0.10 0.67 5.93 86.38 0.51 1.18 16 3 N -0.61 -7.54 2.47 -821.84 -2.03 -9.57 16 4 C 0.11 1.15 6.13 86.38 0.53 1.68 16 5 C -0.16 -1.63 10.24 71.98 0.74 -0.89 16 6 C 0.51 8.96 7.67 87.66 0.67 9.63 16 7 O -0.58 -14.21 15.56 -3.03 -0.05 -14.26 16 8 C -0.12 -1.77 3.54 29.85 0.11 -1.67 16 9 C -0.12 -1.88 4.99 29.85 0.15 -1.73 16 10 C 0.51 10.64 7.83 87.66 0.69 11.33 16 11 O -0.58 -16.17 15.98 -3.04 -0.05 -16.22 16 12 N -0.72 -13.45 5.27 -463.07 -2.44 -15.90 16 13 C 0.13 3.08 5.07 86.38 0.44 3.52 16 14 C -0.08 -2.03 2.19 -10.66 -0.02 -2.05 16 15 C -0.12 -3.28 5.27 30.78 0.16 -3.12 16 16 C 0.14 5.09 6.50 86.36 0.56 5.65 16 17 N -0.62 -28.68 2.77 -699.10 -1.94 -30.61 16 18 C -0.25 -14.15 10.03 84.03 0.84 -13.31 16 19 H 0.05 3.02 8.06 -2.91 -0.02 2.99 16 20 C -0.04 -2.30 5.23 84.86 0.44 -1.85 16 21 N -0.96 -61.01 13.97 21.65 0.30 -60.71 16 22 Si 0.95 46.70 24.34 68.60 1.67 48.37 16 23 H -0.27 -12.71 6.62 99.48 0.66 -12.06 16 24 H -0.31 -15.70 7.11 99.48 0.71 -14.99 16 25 H -0.26 -12.05 6.64 99.48 0.66 -11.39 16 26 C 0.12 4.88 4.21 86.36 0.36 5.24 16 27 C -0.12 -3.78 5.36 30.67 0.16 -3.62 16 28 H 0.05 0.44 7.22 -2.39 -0.02 0.42 16 29 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.10 0.32 8.07 -2.39 -0.02 0.30 16 32 H 0.09 0.59 6.44 -2.38 -0.02 0.57 16 33 H 0.10 0.56 8.07 -2.39 -0.02 0.55 16 34 H 0.06 0.96 7.42 -2.39 -0.02 0.94 16 35 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 36 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.11 1.50 7.36 -2.38 -0.02 1.48 16 39 H 0.11 1.49 7.14 -2.39 -0.02 1.48 16 40 H 0.11 1.57 8.10 -2.39 -0.02 1.55 16 41 H 0.11 1.61 8.10 -2.38 -0.02 1.59 16 42 H 0.41 5.81 7.65 -92.71 -0.71 5.10 16 43 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.07 1.54 8.14 -2.39 -0.02 1.53 16 45 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 46 H 0.09 1.86 7.16 -2.38 -0.02 1.84 16 47 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 48 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 49 H 0.05 1.93 7.93 -2.39 -0.02 1.91 16 50 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 51 H 0.05 2.11 4.50 -2.39 -0.01 2.10 16 52 H 0.04 1.41 7.07 -2.39 -0.02 1.39 16 53 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 54 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -77.26 417.47 2.61 -74.64 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 0.06 Total: 14.64 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: 7.08 Total: 9.63 kcal Atomic # 7 Polarization: -110.68 SS G_CDS: -6.11 Total: -116.79 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -0.10 Total: -30.48 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 1.67 Total: 48.37 kcal Total: -77.26 2.61 -74.64 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088390139.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.459 kcal (2) G-P(sol) polarization free energy of solvation -77.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds