Wall clock time and date at job start Sat Apr 11 2020 05:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 109.46893 * 2 1 4 4 C 1.46499 * 120.00240 * 270.00418 * 3 2 1 5 5 C 1.53008 * 109.47134 * 251.29071 * 4 3 2 6 6 C 1.34782 * 120.00095 * 90.00337 * 3 2 1 7 7 O 1.21583 * 119.99886 * 19.94686 * 6 3 2 8 8 N 1.34776 * 119.99926 * 199.95589 * 6 3 2 9 9 C 1.46928 * 120.62551 * 208.66038 * 8 6 3 10 10 C 1.53198 * 108.77468 * 233.62621 * 9 8 6 11 11 C 1.53039 * 109.31255 * 305.36794 * 10 9 8 12 12 C 1.50706 * 109.45840 * 181.38478 * 11 10 9 13 13 O 1.21279 * 119.99638 * 346.71260 * 12 11 10 14 14 N 1.34773 * 119.99879 * 166.71289 * 12 11 10 15 15 C 1.46492 * 120.00137 * 184.87019 * 14 12 11 16 16 C 1.46508 * 119.99866 * 4.87266 * 14 12 11 17 17 H 1.08992 * 109.47304 * 354.65965 * 16 14 12 18 18 C 1.53002 * 109.46539 * 234.66239 * 16 14 12 19 19 C 1.50695 * 109.46991 * 114.66499 * 16 14 12 20 20 H 1.07998 * 120.00391 * 359.97438 * 19 16 14 21 21 C 1.37883 * 119.99563 * 179.97438 * 19 16 14 22 22 N 1.31509 * 120.00097 * 359.97438 * 21 19 16 23 23 Si 1.86803 * 119.99784 * 179.97438 * 21 19 16 24 24 H 1.48498 * 109.47398 * 179.97438 * 23 21 19 25 25 H 1.48500 * 109.47027 * 300.00243 * 23 21 19 26 26 H 1.48507 * 109.47155 * 59.99793 * 23 21 19 27 27 C 1.53041 * 109.53896 * 61.36133 * 11 10 9 28 28 C 1.46924 * 120.63673 * 28.67990 * 8 6 3 29 29 H 1.09002 * 109.46970 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47349 * 299.99491 * 1 2 3 31 31 H 1.08993 * 109.47745 * 60.00081 * 1 2 3 32 32 H 1.09003 * 109.46930 * 240.00176 * 2 1 3 33 33 H 1.09001 * 109.47151 * 119.99954 * 2 1 3 34 34 H 1.09003 * 109.47209 * 11.28954 * 4 3 2 35 35 H 1.09004 * 109.47493 * 131.28986 * 4 3 2 36 36 H 1.08994 * 109.46845 * 59.99695 * 5 4 3 37 37 H 1.08998 * 109.47009 * 180.02562 * 5 4 3 38 38 H 1.09004 * 109.46635 * 299.99602 * 5 4 3 39 39 H 1.08999 * 109.58921 * 113.84036 * 9 8 6 40 40 H 1.08996 * 109.70586 * 353.48443 * 9 8 6 41 41 H 1.09000 * 109.49921 * 185.41274 * 10 9 8 42 42 H 1.09001 * 109.51759 * 65.33457 * 10 9 8 43 43 H 1.09002 * 109.45984 * 301.35591 * 11 10 9 44 44 H 1.09006 * 109.47116 * 275.10542 * 15 14 12 45 45 H 1.08998 * 109.47190 * 35.09812 * 15 14 12 46 46 H 1.08997 * 109.47813 * 155.10479 * 15 14 12 47 47 H 1.08999 * 109.46803 * 180.02562 * 18 16 14 48 48 H 1.09001 * 109.47115 * 299.99624 * 18 16 14 49 49 H 1.08996 * 109.47562 * 60.00285 * 18 16 14 50 50 H 0.97003 * 119.99631 * 180.02562 * 22 21 19 51 51 H 1.09001 * 109.49322 * 58.58944 * 27 11 10 52 52 H 1.09003 * 109.49507 * 178.68256 * 27 11 10 53 53 H 1.08994 * 109.58723 * 246.16235 * 28 8 6 54 54 H 1.09000 * 109.58210 * 6.43778 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2623 2.0719 -1.2687 5 6 3.7691 2.2348 -1.4791 6 6 2.2430 2.0166 1.1672 7 8 2.3973 1.3752 2.1886 8 7 2.2963 3.3628 1.2023 9 6 3.1113 4.0536 2.2110 10 6 2.2278 5.0618 2.9525 11 6 1.5613 5.9933 1.9375 12 6 0.7180 7.0081 2.6657 13 8 0.4592 6.8508 3.8400 14 7 0.2515 8.0903 2.0118 15 6 -0.4773 9.1299 2.7426 16 6 0.4733 8.2270 0.5700 17 1 1.1088 7.4131 0.2214 18 6 1.1563 9.5659 0.2839 19 6 -0.8501 8.1744 -0.1489 20 1 -1.7648 8.0510 0.4118 21 6 -0.8930 8.2838 -1.5227 22 7 0.2208 8.4345 -2.2055 23 14 -2.5334 8.2179 -2.4141 24 1 -2.3088 8.3578 -3.8753 25 1 -3.1955 6.9179 -2.1367 26 1 -3.4000 9.3261 -1.9386 27 6 0.6746 5.1744 0.9965 28 6 1.5405 4.1676 0.2329 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.8423 1.4874 -2.0873 35 1 1.7906 3.0543 -1.2443 36 1 4.2408 1.2524 -1.5035 37 1 3.9507 2.7490 -2.4228 38 1 4.1891 2.8193 -0.6605 39 1 3.9320 4.5777 1.7213 40 1 3.5119 3.3284 2.9193 41 1 2.8407 5.6484 3.6369 42 1 1.4614 4.5294 3.5158 43 1 2.3282 6.5072 1.3579 44 1 -1.5282 8.8511 2.8195 45 1 -0.0553 9.2352 3.7420 46 1 -0.3908 10.0770 2.2100 47 1 1.3209 9.6678 -0.7887 48 1 0.5207 10.3799 0.6325 49 1 2.1135 9.6040 0.8039 50 1 0.1905 8.5118 -3.1720 51 1 -0.0771 4.6406 1.5779 52 1 0.1821 5.8412 0.2888 53 1 2.2330 4.7009 -0.4182 54 1 0.9045 3.5157 -0.3661 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103442111.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:07 Heat of formation + Delta-G solvation = -55.484987 kcal Electronic energy + Delta-G solvation = -32604.291873 eV Core-core repulsion = 28576.642267 eV Total energy + Delta-G solvation = -4027.649606 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.91509 -40.91689 -38.29681 -37.36329 -37.24409 -34.50992 -34.24858 -32.82175 -31.99515 -30.92758 -30.25360 -28.56443 -27.22125 -26.32569 -24.97062 -24.07834 -23.84621 -23.06527 -21.75388 -20.51026 -19.67725 -18.41982 -18.07894 -17.93855 -17.62197 -17.07370 -16.74714 -16.34107 -16.03971 -15.85019 -15.54190 -15.06654 -14.87096 -14.76049 -14.64418 -14.55091 -14.43605 -14.07117 -13.72713 -13.59380 -13.44467 -13.43274 -13.32914 -13.07583 -12.89113 -12.86225 -12.75465 -12.62849 -12.55057 -12.40959 -12.26979 -12.07749 -12.05281 -11.93070 -11.80704 -11.66921 -11.43360 -11.15893 -11.01517 -10.56891 -10.41419 -9.77008 -9.36637 -9.33404 -8.08089 -6.20971 1.46025 1.50274 1.54549 1.64458 1.75772 1.89496 2.35874 2.51920 2.77879 3.19823 3.62249 3.73784 3.81621 3.99416 4.09208 4.16512 4.21025 4.26745 4.34202 4.42166 4.47903 4.49234 4.54957 4.58978 4.63388 4.66556 4.72266 4.78389 4.80066 4.82701 4.87763 4.91832 4.95302 4.98230 5.01826 5.03977 5.07204 5.07765 5.25061 5.28494 5.31738 5.35987 5.46284 5.56256 5.64144 5.81216 5.83579 5.96086 6.04940 6.27211 6.69669 6.86525 6.89900 7.34613 7.47379 7.51519 8.93894 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010438 B = 0.004178 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2681.835758 B = 6699.750286 C = 8143.996484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.123 3.877 3 N -0.629 5.629 4 C 0.073 3.927 5 C -0.161 4.161 6 C 0.714 3.286 7 O -0.628 6.628 8 N -0.635 5.635 9 C 0.139 3.861 10 C -0.101 4.101 11 C -0.090 4.090 12 C 0.506 3.494 13 O -0.602 6.602 14 N -0.597 5.597 15 C 0.096 3.904 16 C 0.257 3.743 17 H 0.061 0.939 18 C -0.145 4.145 19 C -0.537 4.537 20 H 0.042 0.958 21 C 0.042 3.958 22 N -0.898 5.898 23 Si 0.939 3.061 24 H -0.281 1.281 25 H -0.277 1.277 26 H -0.282 1.282 27 C -0.124 4.124 28 C 0.123 3.877 29 H 0.083 0.917 30 H 0.027 0.973 31 H 0.065 0.935 32 H 0.105 0.895 33 H 0.063 0.937 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.055 0.945 37 H 0.082 0.918 38 H 0.042 0.958 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.045 0.955 43 H 0.106 0.894 44 H 0.037 0.963 45 H 0.059 0.941 46 H 0.080 0.920 47 H 0.078 0.922 48 H 0.033 0.967 49 H 0.029 0.971 50 H 0.267 0.733 51 H 0.043 0.957 52 H 0.094 0.906 53 H 0.090 0.910 54 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.323 -10.345 -3.664 12.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.001 3.999 3 N -0.366 5.366 4 C -0.048 4.048 5 C -0.219 4.219 6 C 0.418 3.582 7 O -0.509 6.509 8 N -0.373 5.373 9 C 0.016 3.984 10 C -0.140 4.140 11 C -0.111 4.111 12 C 0.295 3.705 13 O -0.485 6.485 14 N -0.327 5.327 15 C -0.047 4.047 16 C 0.156 3.844 17 H 0.078 0.922 18 C -0.204 4.204 19 C -0.576 4.576 20 H 0.061 0.939 21 C -0.160 4.160 22 N -0.536 5.536 23 Si 0.766 3.234 24 H -0.206 1.206 25 H -0.203 1.203 26 H -0.208 1.208 27 C -0.162 4.162 28 C 0.001 3.999 29 H 0.102 0.898 30 H 0.046 0.954 31 H 0.084 0.916 32 H 0.124 0.876 33 H 0.081 0.919 34 H 0.122 0.878 35 H 0.114 0.886 36 H 0.074 0.926 37 H 0.101 0.899 38 H 0.061 0.939 39 H 0.108 0.892 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.064 0.936 43 H 0.124 0.876 44 H 0.056 0.944 45 H 0.078 0.922 46 H 0.099 0.901 47 H 0.097 0.903 48 H 0.052 0.948 49 H 0.048 0.952 50 H 0.076 0.924 51 H 0.062 0.938 52 H 0.112 0.888 53 H 0.108 0.892 54 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 6.338 -10.731 -2.753 12.764 hybrid contribution -1.309 0.408 -0.215 1.388 sum 5.029 -10.323 -2.967 11.860 Atomic orbital electron populations 1.22161 0.95861 1.02963 1.01290 1.21450 0.94046 0.80888 1.03566 1.47400 1.69909 1.14573 1.04745 1.22458 0.97504 1.00098 0.84774 1.22101 0.95555 1.01931 1.02356 1.16066 0.76744 0.81780 0.83651 1.90823 1.58192 1.66827 1.35017 1.47212 1.51339 1.03372 1.35331 1.21463 0.92363 0.94275 0.90273 1.21617 0.99043 0.96495 0.96881 1.21167 0.97868 0.94704 0.97388 1.21068 0.80289 0.82586 0.86523 1.90572 1.62103 1.77434 1.18427 1.48334 1.53214 1.20124 1.10987 1.21408 0.95490 0.91676 0.96158 1.19040 0.95711 0.95723 0.73966 0.92177 1.22023 0.97223 0.97950 1.03169 1.21379 0.93007 1.51317 0.91884 0.93937 1.25266 0.98581 0.94460 0.97667 1.69893 1.26914 1.49117 1.07685 0.85913 0.81315 0.78339 0.77799 1.20600 1.20303 1.20829 1.21976 0.97571 0.98029 0.98671 1.22045 0.94659 0.92854 0.90354 0.89813 0.95402 0.91602 0.87637 0.91856 0.87783 0.88552 0.92638 0.89870 0.93910 0.89246 0.90203 0.90132 0.93562 0.87578 0.94422 0.92202 0.90138 0.90291 0.94806 0.95220 0.92354 0.93789 0.88755 0.89233 0.87746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 10.24 71.98 0.74 -2.30 16 2 C 0.12 2.39 6.21 86.38 0.54 2.93 16 3 N -0.63 -14.34 2.38 -839.81 -2.00 -16.34 16 4 C 0.07 1.23 5.59 86.38 0.48 1.72 16 5 C -0.16 -2.60 10.03 71.98 0.72 -1.88 16 6 C 0.71 21.53 7.15 179.05 1.28 22.81 16 7 O -0.63 -23.94 15.73 -3.98 -0.06 -24.00 16 8 N -0.63 -17.48 2.69 -836.93 -2.25 -19.73 16 9 C 0.14 3.71 6.41 86.36 0.55 4.26 16 10 C -0.10 -3.15 4.72 30.67 0.14 -3.00 16 11 C -0.09 -3.00 1.63 -11.51 -0.02 -3.02 16 12 C 0.51 20.60 6.92 87.66 0.61 21.21 16 13 O -0.60 -27.74 15.73 -3.03 -0.05 -27.79 16 14 N -0.60 -24.36 2.75 -826.81 -2.28 -26.63 16 15 C 0.10 3.61 9.79 127.77 1.25 4.86 16 16 C 0.26 10.82 1.81 44.24 0.08 10.90 16 17 H 0.06 2.54 4.52 -2.39 -0.01 2.53 16 18 C -0.15 -5.93 8.86 71.98 0.64 -5.29 16 19 C -0.54 -25.26 7.65 25.60 0.20 -25.07 16 20 H 0.04 2.12 7.80 -2.91 -0.02 2.10 16 21 C 0.04 1.96 5.30 84.66 0.45 2.41 16 22 N -0.90 -42.38 11.32 21.45 0.24 -42.14 16 23 Si 0.94 38.52 29.54 68.60 2.03 40.54 16 24 H -0.28 -11.23 7.11 99.48 0.71 -10.52 16 25 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 26 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 27 C -0.12 -4.07 4.96 30.67 0.15 -3.91 16 28 C 0.12 3.16 4.39 86.36 0.38 3.54 16 29 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.11 1.37 8.03 -2.39 -0.02 1.35 16 33 H 0.06 1.50 7.28 -2.39 -0.02 1.49 16 34 H 0.10 1.27 7.91 -2.39 -0.02 1.25 16 35 H 0.10 1.74 3.40 -2.39 -0.01 1.73 16 36 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.04 0.83 7.76 -2.39 -0.02 0.81 16 39 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.08 2.28 7.27 -2.39 -0.02 2.26 16 41 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 42 H 0.05 1.70 8.00 -2.39 -0.02 1.68 16 43 H 0.11 3.27 7.18 -2.39 -0.02 3.26 16 44 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 45 H 0.06 2.16 7.66 -2.39 -0.02 2.14 16 46 H 0.08 2.84 6.16 -2.39 -0.01 2.82 16 47 H 0.08 3.53 6.07 -2.39 -0.01 3.51 16 48 H 0.03 1.34 6.48 -2.39 -0.02 1.33 16 49 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 50 H 0.27 12.15 8.31 -92.71 -0.77 11.38 16 51 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 52 H 0.09 3.55 5.32 -2.39 -0.01 3.54 16 53 H 0.09 2.06 7.90 -2.39 -0.02 2.04 16 54 H 0.10 2.48 5.37 -2.39 -0.01 2.46 16 Total: -1.00 -62.04 406.94 4.70 -57.35 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: 0.88 Total: 28.57 kcal Atomic # 6 Polarization: 21.98 SS G_CDS: 8.19 Total: 30.17 kcal Atomic # 7 Polarization: -98.56 SS G_CDS: -6.29 Total: -104.84 kcal Atomic # 8 Polarization: -51.68 SS G_CDS: -0.11 Total: -51.79 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 2.03 Total: 40.54 kcal Total: -62.04 4.70 -57.35 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103442111.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.861 kcal (2) G-P(sol) polarization free energy of solvation -62.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds