Wall clock time and date at job start Sat Apr 11 2020 05:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46492 * 109.47199 * 2 1 4 4 C 1.46503 * 120.00509 * 270.00142 * 3 2 1 5 5 C 1.50700 * 109.47058 * 270.00435 * 4 3 2 6 6 H 1.07998 * 120.00193 * 359.97438 * 5 4 3 7 7 C 1.37882 * 120.00035 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99716 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00189 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47000 * 59.99581 * 9 7 5 11 11 H 1.48500 * 109.47024 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46995 * 299.99911 * 9 7 5 13 13 C 1.34780 * 120.00110 * 90.00033 * 3 2 1 14 14 O 1.21277 * 120.00023 * 179.97438 * 13 3 2 15 15 C 1.50704 * 119.99741 * 0.02562 * 13 3 2 16 16 N 1.46900 * 109.47108 * 179.97438 * 15 13 3 17 17 C 1.48539 * 110.99796 * 307.39230 * 16 15 13 18 18 C 1.54932 * 103.22489 * 200.27757 * 17 16 15 19 19 C 1.54598 * 102.92273 * 37.41993 * 18 17 16 20 20 H 1.09002 * 110.31174 * 96.95391 * 19 18 17 21 21 C 1.52997 * 110.39179 * 219.08302 * 19 18 17 22 22 N 1.46903 * 109.46851 * 292.14957 * 21 19 18 23 23 C 1.47012 * 111.00221 * 293.63574 * 22 21 19 24 24 C 1.53100 * 109.25895 * 177.60797 * 23 22 21 25 25 O 1.43020 * 109.25615 * 56.85093 * 24 23 22 26 26 C 1.43006 * 113.73705 * 301.32713 * 25 24 23 27 27 C 1.47020 * 111.00028 * 170.00187 * 22 21 19 28 28 C 1.47897 * 110.99752 * 190.00109 * 16 15 13 29 29 H 1.08997 * 109.47380 * 59.99603 * 1 2 3 30 30 H 1.08993 * 109.47346 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46763 * 299.99996 * 1 2 3 32 32 H 1.09001 * 109.46437 * 240.00398 * 2 1 3 33 33 H 1.09003 * 109.46973 * 120.00288 * 2 1 3 34 34 H 1.09006 * 109.46626 * 30.00041 * 4 3 2 35 35 H 1.09001 * 109.47246 * 149.99716 * 4 3 2 36 36 H 0.96998 * 120.00130 * 179.97438 * 8 7 5 37 37 H 1.08997 * 109.46785 * 59.99549 * 15 13 3 38 38 H 1.08997 * 109.47021 * 299.99566 * 15 13 3 39 39 H 1.08999 * 110.66816 * 318.71519 * 17 16 15 40 40 H 1.09005 * 110.66277 * 81.67794 * 17 16 15 41 41 H 1.08994 * 110.72994 * 279.05876 * 18 17 16 42 42 H 1.09002 * 110.72359 * 155.77140 * 18 17 16 43 43 H 1.08993 * 109.47324 * 52.14888 * 21 19 18 44 44 H 1.09001 * 109.47249 * 172.15261 * 21 19 18 45 45 H 1.09001 * 109.50667 * 297.54750 * 23 22 21 46 46 H 1.09003 * 109.50283 * 57.67142 * 23 22 21 47 47 H 1.08993 * 109.50697 * 296.91712 * 24 23 22 48 48 H 1.09008 * 109.53865 * 176.80232 * 24 23 22 49 49 H 1.09000 * 109.50805 * 298.73778 * 26 25 24 50 50 H 1.09007 * 109.54418 * 178.62887 * 26 25 24 51 51 H 1.09001 * 109.50418 * 302.32910 * 27 22 21 52 52 H 1.08998 * 109.50560 * 62.41486 * 27 22 21 53 53 H 1.08997 * 109.92227 * 26.48731 * 28 16 15 54 54 H 1.08999 * 109.91658 * 265.19118 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0719 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3429 1.2308 -1.0959 7 6 4.1492 2.3897 -2.8780 8 7 3.3489 3.1251 -3.6185 9 14 5.9135 2.0967 -3.4170 10 1 6.1416 0.6401 -3.5937 11 1 6.1609 2.7968 -4.7030 12 1 6.8407 2.6209 -2.3822 13 6 2.2430 2.0165 1.1672 14 8 2.6477 3.1598 1.1672 15 6 1.9924 1.3059 2.4723 16 7 2.3111 2.2057 3.5889 17 6 3.6784 2.7680 3.4457 18 6 4.0277 3.2214 4.8855 19 6 3.3949 2.1144 5.7597 20 1 4.1452 1.3722 6.0322 21 6 2.7680 2.7210 7.0166 22 7 3.8278 3.2477 7.8870 23 6 4.6670 2.1609 8.4122 24 6 5.7913 2.7573 9.2632 25 8 5.2219 3.5538 10.3057 26 6 4.3991 4.6222 9.8298 27 6 3.2607 4.0448 8.9845 28 6 2.3080 1.4758 4.8752 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8900 34 1 1.5817 1.6878 -2.0284 35 1 2.0956 3.1411 -1.1383 36 1 3.6749 3.5156 -4.4443 37 1 2.6229 0.4186 2.5298 38 1 0.9445 1.0114 2.5303 39 1 4.3752 2.0028 3.1036 40 1 3.6755 3.6172 2.7623 41 1 3.5785 4.1899 5.1046 42 1 5.1079 3.2549 5.0279 43 1 2.0952 3.5302 6.7329 44 1 2.2080 1.9530 7.5502 45 1 4.0594 1.4960 9.0260 46 1 5.0970 1.5997 7.5825 47 1 6.4305 3.3799 8.6373 48 1 6.3827 1.9531 9.7013 49 1 4.9978 5.2990 9.2203 50 1 3.9829 5.1672 10.6771 51 1 2.6641 4.8588 8.5725 52 1 2.6300 3.4102 9.6070 53 1 2.5377 0.4238 4.7059 54 1 1.3342 1.5733 5.3551 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129240065.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:20 Heat of formation + Delta-G solvation = -84.100176 kcal Electronic energy + Delta-G solvation = -30609.694280 eV Core-core repulsion = 26580.803826 eV Total energy + Delta-G solvation = -4028.890454 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.20629 -40.55687 -39.34531 -37.06191 -36.62571 -34.94308 -33.49032 -32.11116 -31.59835 -30.63529 -29.59394 -28.52265 -27.16362 -25.01381 -24.85992 -24.41308 -23.85340 -22.31027 -21.41719 -20.78588 -19.86900 -18.63523 -18.03405 -17.68208 -17.32786 -17.10597 -16.64890 -16.49499 -16.24174 -16.03418 -15.92368 -15.70894 -15.52764 -14.92107 -14.85103 -14.65669 -14.38002 -14.29895 -14.17521 -13.60066 -13.53383 -13.30223 -13.16819 -13.11480 -12.99239 -12.80610 -12.64772 -12.57244 -12.36978 -12.33095 -12.19950 -12.14451 -12.03630 -11.88310 -11.76242 -11.63878 -11.53919 -11.30022 -10.64952 -10.62548 -10.34769 -9.43204 -9.33259 -9.32450 -8.22594 -6.37658 1.34802 1.39255 1.46507 1.86017 2.24163 2.41119 2.73788 2.97556 3.06406 3.11142 3.61377 3.71045 3.83864 3.88905 3.97077 4.04408 4.09090 4.21609 4.22654 4.30775 4.33713 4.37128 4.37291 4.44262 4.49854 4.54962 4.65602 4.66227 4.71829 4.75420 4.77133 4.83813 4.89154 4.92039 4.94840 4.99327 5.00690 5.04565 5.05611 5.19436 5.22239 5.30751 5.35796 5.39618 5.58597 5.85636 5.91007 5.99703 6.00807 6.06108 6.06912 6.19041 6.70161 6.83169 7.28613 7.54027 8.84131 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015755 B = 0.002249 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.809147 B =12444.282567 C =13527.144574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.605 5.605 4 C 0.265 3.735 5 C -0.540 4.540 6 H 0.051 0.949 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.967 3.033 10 H -0.260 1.260 11 H -0.278 1.278 12 H -0.278 1.278 13 C 0.494 3.506 14 O -0.578 6.578 15 C 0.042 3.958 16 N -0.516 5.516 17 C 0.033 3.967 18 C -0.092 4.092 19 C -0.084 4.084 20 H 0.085 0.915 21 C 0.075 3.925 22 N -0.546 5.546 23 C 0.018 3.982 24 C 0.061 3.939 25 O -0.406 6.406 26 C 0.062 3.938 27 C 0.020 3.980 28 C 0.042 3.958 29 H 0.037 0.963 30 H 0.096 0.904 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.020 0.980 35 H -0.006 1.006 36 H 0.267 0.733 37 H 0.079 0.921 38 H 0.125 0.875 39 H 0.024 0.976 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.046 0.954 45 H 0.041 0.959 46 H 0.094 0.906 47 H 0.056 0.944 48 H 0.112 0.888 49 H 0.056 0.944 50 H 0.113 0.887 51 H 0.092 0.908 52 H 0.041 0.959 53 H 0.060 0.940 54 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.894 -7.548 26.677 27.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.022 4.022 3 N -0.337 5.337 4 C 0.143 3.857 5 C -0.579 4.579 6 H 0.070 0.930 7 C -0.192 4.192 8 N -0.568 5.568 9 Si 0.791 3.209 10 H -0.184 1.184 11 H -0.203 1.203 12 H -0.203 1.203 13 C 0.282 3.718 14 O -0.458 6.458 15 C -0.088 4.088 16 N -0.241 5.241 17 C -0.094 4.094 18 C -0.131 4.131 19 C -0.104 4.104 20 H 0.103 0.897 21 C -0.053 4.053 22 N -0.272 5.272 23 C -0.110 4.110 24 C -0.016 4.016 25 O -0.325 6.325 26 C -0.015 4.015 27 C -0.108 4.108 28 C -0.086 4.086 29 H 0.056 0.944 30 H 0.114 0.886 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.116 0.884 34 H 0.038 0.962 35 H 0.012 0.988 36 H 0.076 0.924 37 H 0.097 0.903 38 H 0.143 0.857 39 H 0.043 0.957 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.064 0.936 45 H 0.059 0.941 46 H 0.112 0.888 47 H 0.074 0.926 48 H 0.130 0.870 49 H 0.074 0.926 50 H 0.131 0.869 51 H 0.111 0.889 52 H 0.059 0.941 53 H 0.079 0.921 54 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.786 -6.195 26.398 27.174 hybrid contribution 0.787 -0.754 -0.991 1.473 sum -0.999 -6.949 25.407 26.359 Atomic orbital electron populations 1.22150 0.94528 1.03491 1.01683 1.21736 0.95366 0.81377 1.03755 1.48289 1.64168 1.15075 1.06170 1.18654 0.95185 0.91414 0.80420 1.21648 0.97834 1.31974 1.06437 0.93043 1.25869 1.02388 0.94514 0.96464 1.70048 1.37803 1.34189 1.14788 0.85484 0.79044 0.79022 0.77367 1.18424 1.20338 1.20347 1.21172 0.77429 0.86781 0.86404 1.90594 1.47270 1.20407 1.87572 1.22258 1.04502 0.94300 0.87789 1.64624 1.27066 1.30955 1.01476 1.23325 0.88137 0.99426 0.98549 1.22308 1.00366 0.98691 0.91703 1.21956 0.97002 0.97147 0.94255 0.89671 1.22106 0.92245 0.98700 0.92217 1.62160 1.22423 1.23420 1.19155 1.22833 0.95997 0.93231 0.98964 1.22779 0.94462 0.95110 0.89250 1.87949 1.66293 1.44800 1.33483 1.22771 0.91156 0.88890 0.98690 1.22784 0.97186 0.98432 0.92430 1.23025 1.00335 0.96333 0.88926 0.94417 0.88554 0.92075 0.91085 0.88356 0.96197 0.98765 0.92422 0.90314 0.85722 0.95750 0.91285 0.91621 0.91070 0.90649 0.93597 0.94056 0.88803 0.92601 0.87020 0.92567 0.86909 0.88931 0.94056 0.92122 0.88901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.93 10.24 71.98 0.74 -3.20 16 2 C 0.10 3.02 5.93 86.38 0.51 3.54 16 3 N -0.61 -25.88 2.46 -826.14 -2.03 -27.91 16 4 C 0.26 14.55 5.16 85.63 0.44 15.00 16 5 C -0.54 -31.53 9.39 25.60 0.24 -31.29 16 6 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 7 C 0.01 0.38 5.46 84.66 0.46 0.85 16 8 N -0.93 -57.02 13.29 21.45 0.28 -56.73 16 9 Si 0.97 45.36 29.54 68.60 2.03 47.39 16 10 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 12 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 13 C 0.49 20.83 7.38 87.66 0.65 21.47 16 14 O -0.58 -30.35 13.09 -3.02 -0.04 -30.38 16 15 C 0.04 1.22 4.07 85.56 0.35 1.57 16 16 N -0.52 -14.91 5.26 -887.57 -4.67 -19.58 16 17 C 0.03 1.09 5.31 86.65 0.46 1.55 16 18 C -0.09 -2.27 6.45 31.80 0.21 -2.06 16 19 C -0.08 -1.52 2.93 -9.91 -0.03 -1.55 16 20 H 0.09 1.36 6.34 -2.39 -0.02 1.34 16 21 C 0.07 1.18 4.04 86.30 0.35 1.53 16 22 N -0.55 -8.74 4.56 -895.20 -4.08 -12.82 16 23 C 0.02 0.25 5.45 86.32 0.47 0.72 16 24 C 0.06 0.87 7.01 72.02 0.50 1.37 16 25 O -0.41 -7.22 10.83 -148.98 -1.61 -8.83 16 26 C 0.06 0.87 7.01 72.01 0.50 1.37 16 27 C 0.02 0.28 5.65 86.31 0.49 0.77 16 28 C 0.04 0.80 6.36 86.45 0.55 1.35 16 29 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.06 1.39 7.22 -2.38 -0.02 1.37 16 32 H 0.07 2.30 8.07 -2.39 -0.02 2.28 16 33 H 0.10 2.26 6.44 -2.39 -0.02 2.25 16 34 H 0.02 1.12 8.07 -2.38 -0.02 1.10 16 35 H -0.01 -0.37 7.42 -2.39 -0.02 -0.39 16 36 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 37 H 0.08 1.93 7.07 -2.39 -0.02 1.92 16 38 H 0.13 2.89 7.19 -2.39 -0.02 2.88 16 39 H 0.02 0.82 8.02 -2.39 -0.02 0.80 16 40 H 0.07 2.93 5.96 -2.38 -0.01 2.92 16 41 H 0.07 1.73 7.79 -2.39 -0.02 1.71 16 42 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.08 1.32 7.93 -2.39 -0.02 1.30 16 44 H 0.05 0.63 8.12 -2.39 -0.02 0.61 16 45 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 46 H 0.09 1.20 6.29 -2.39 -0.02 1.19 16 47 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 48 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 49 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 50 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 51 H 0.09 1.19 8.09 -2.39 -0.02 1.17 16 52 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 53 H 0.06 0.99 7.57 -2.39 -0.02 0.97 16 54 H 0.09 1.54 7.68 -2.39 -0.02 1.52 16 Total: -1.00 -76.50 412.84 -2.38 -78.88 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 0.85 Total: 17.02 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: 6.89 Total: 12.98 kcal Atomic # 7 Polarization: -106.55 SS G_CDS: -10.50 Total: -117.05 kcal Atomic # 8 Polarization: -37.57 SS G_CDS: -1.65 Total: -39.22 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -76.50 -2.38 -78.88 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129240065.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.222 kcal (2) G-P(sol) polarization free energy of solvation -76.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds