Wall clock time and date at job start Sat Apr 11 2020 05:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.46907 * 2 1 4 4 C 1.46497 * 119.99942 * 270.00038 * 3 2 1 5 5 C 1.50707 * 109.47192 * 269.99723 * 4 3 2 6 6 H 1.07997 * 119.99474 * 0.02562 * 5 4 3 7 7 C 1.37868 * 120.00125 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00044 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00057 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47208 * 90.00118 * 9 7 5 11 11 H 1.48501 * 109.47166 * 210.00016 * 9 7 5 12 12 H 1.48504 * 109.47133 * 330.00007 * 9 7 5 13 13 C 1.34776 * 119.99739 * 89.99939 * 3 2 1 14 14 O 1.21287 * 119.99985 * 179.97438 * 13 3 2 15 15 C 1.50696 * 120.00196 * 0.02562 * 13 3 2 16 16 N 1.46906 * 109.47275 * 179.97438 * 15 13 3 17 17 C 1.46896 * 111.00072 * 66.04207 * 16 15 13 18 18 C 1.46896 * 111.00028 * 190.00201 * 16 15 13 19 19 C 1.52999 * 109.47278 * 175.00004 * 18 16 15 20 20 C 1.52996 * 109.47366 * 179.97438 * 19 18 16 21 21 C 1.52995 * 109.47465 * 300.00039 * 20 19 18 22 22 N 1.46496 * 109.47468 * 180.02562 * 21 20 19 23 23 C 1.34777 * 120.00266 * 155.00186 * 22 21 20 24 24 C 1.50706 * 119.99766 * 179.97438 * 23 22 21 25 25 O 1.21274 * 120.00135 * 0.27234 * 23 22 21 26 26 C 1.53000 * 109.47187 * 59.99460 * 21 20 19 27 27 C 1.52996 * 109.47359 * 300.00605 * 26 21 20 28 28 H 1.09001 * 109.47658 * 299.99630 * 1 2 3 29 29 H 1.08996 * 109.47613 * 60.00352 * 1 2 3 30 30 H 1.09008 * 109.47107 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47207 * 240.00441 * 2 1 3 32 32 H 1.09004 * 109.47318 * 120.00182 * 2 1 3 33 33 H 1.08989 * 109.47410 * 30.00098 * 4 3 2 34 34 H 1.09007 * 109.46986 * 150.00407 * 4 3 2 35 35 H 0.97002 * 120.00214 * 180.02562 * 8 7 5 36 36 H 1.09000 * 109.47656 * 59.99855 * 15 13 3 37 37 H 1.08997 * 109.47280 * 299.99453 * 15 13 3 38 38 H 1.08994 * 109.47374 * 183.95542 * 17 16 15 39 39 H 1.08999 * 109.47107 * 303.95721 * 17 16 15 40 40 H 1.09001 * 109.47163 * 63.95461 * 17 16 15 41 41 H 1.08995 * 109.47684 * 54.99302 * 18 16 15 42 42 H 1.09002 * 109.47140 * 59.99372 * 19 18 16 43 43 H 1.09006 * 109.46903 * 299.99918 * 19 18 16 44 44 H 1.09007 * 109.47185 * 179.97438 * 20 19 18 45 45 H 1.09002 * 109.47071 * 59.99860 * 20 19 18 46 46 H 1.09002 * 109.46830 * 299.99968 * 21 20 19 47 47 H 0.96999 * 119.99691 * 334.99171 * 22 21 20 48 48 H 1.08999 * 109.47015 * 90.00071 * 24 23 22 49 49 H 1.09000 * 109.46646 * 209.99223 * 24 23 22 50 50 H 1.09000 * 109.47248 * 329.99941 * 24 23 22 51 51 H 1.09002 * 109.46821 * 60.00502 * 26 21 20 52 52 H 1.08998 * 109.47335 * 179.97438 * 26 21 20 53 53 H 1.09002 * 109.47071 * 299.99744 * 27 26 21 54 54 H 1.08997 * 109.47363 * 180.02562 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3425 1.2304 -1.0961 7 6 4.1493 2.3906 -2.8774 8 7 5.3912 2.1836 -3.2572 9 14 3.0134 3.4372 -3.9279 10 1 3.1171 4.8571 -3.5057 11 1 3.4064 3.3151 -5.3548 12 1 1.6135 2.9713 -3.7585 13 6 2.2428 2.0165 1.1672 14 8 2.6475 3.1599 1.1673 15 6 1.9922 1.3059 2.4723 16 7 2.3108 2.2058 3.5889 17 6 1.3844 3.3451 3.6278 18 6 2.3078 1.4809 4.8665 19 6 2.7640 2.4186 5.9861 20 6 2.7602 1.6638 7.3169 21 6 1.3455 1.1635 7.6155 22 7 1.3418 0.4413 8.8901 23 6 0.2051 0.3471 9.6080 24 6 0.2012 -0.3964 10.9189 25 8 -0.8159 0.8561 9.1966 26 6 0.8893 0.2258 6.4960 27 6 0.8930 0.9806 5.1652 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.5816 1.6878 -2.0283 34 1 2.0954 3.1411 -1.1383 35 1 5.7175 2.5747 -4.0828 36 1 2.6227 0.4187 2.5299 37 1 0.9444 1.0114 2.5303 38 1 1.6851 4.0311 4.4195 39 1 1.4064 3.8641 2.6695 40 1 0.3741 2.9854 3.8230 41 1 2.9881 0.6316 4.8041 42 1 2.0836 3.2679 6.0485 43 1 3.7717 2.7754 5.7732 44 1 3.0857 2.3318 8.1145 45 1 3.4404 0.8143 7.2547 46 1 0.6653 2.0130 7.6777 47 1 2.1575 0.0307 9.2172 48 1 0.4400 0.2933 11.7285 49 1 -0.7851 -0.8282 11.0887 50 1 0.9458 -1.1918 10.8877 51 1 1.5695 -0.6237 6.4338 52 1 -0.1184 -0.1310 6.7089 53 1 0.2128 1.8301 5.2274 54 1 0.5675 0.3127 4.3677 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344141369.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:58 Heat of formation + Delta-G solvation = -99.632858 kcal Electronic energy + Delta-G solvation = -30773.125583 eV Core-core repulsion = 26743.561582 eV Total energy + Delta-G solvation = -4029.564001 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.36934 -40.76056 -39.64330 -37.27235 -36.69354 -34.86771 -34.34786 -31.98645 -31.81558 -31.15291 -30.27246 -28.78896 -28.52263 -25.79295 -24.40809 -23.98383 -23.61553 -22.16677 -21.49631 -20.37285 -19.77527 -19.09112 -18.18848 -17.79036 -17.41241 -17.19118 -16.70170 -16.35076 -16.29562 -15.93508 -15.78979 -15.18488 -15.10957 -14.83433 -14.70249 -14.60339 -14.52008 -14.23072 -13.95242 -13.70384 -13.47512 -13.39702 -13.31448 -13.17794 -13.16508 -12.91383 -12.80336 -12.67799 -12.52730 -12.42502 -12.25641 -12.12617 -12.01965 -11.95368 -11.83106 -11.72588 -11.36512 -11.28593 -10.88044 -10.82623 -10.51196 -10.03612 -9.39292 -9.10994 -8.33298 -6.37565 1.31386 1.35715 1.43807 1.68012 1.85533 2.21007 2.30651 2.32221 3.00465 3.03563 3.64937 3.69689 3.74893 3.95302 4.04971 4.08216 4.13977 4.17898 4.30835 4.36551 4.37180 4.40901 4.44024 4.48794 4.56515 4.58394 4.62216 4.64141 4.69388 4.76816 4.80263 4.82102 4.91726 4.98512 5.00177 5.01755 5.08942 5.12262 5.15637 5.17319 5.20911 5.36614 5.37484 5.41443 5.47996 5.57309 5.68671 5.99510 6.19459 6.26931 6.63654 6.64064 6.77500 7.23361 7.32995 7.51057 8.83645 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.024926 B = 0.002155 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.071215 B =12988.593175 C =13399.350918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.099 3.901 3 N -0.604 5.604 4 C 0.228 3.772 5 C -0.532 4.532 6 H 0.029 0.971 7 C 0.010 3.990 8 N -0.945 5.945 9 Si 0.947 3.053 10 H -0.278 1.278 11 H -0.274 1.274 12 H -0.240 1.240 13 C 0.497 3.503 14 O -0.576 6.576 15 C 0.052 3.948 16 N -0.537 5.537 17 C 0.022 3.978 18 C 0.088 3.912 19 C -0.107 4.107 20 C -0.110 4.110 21 C 0.144 3.856 22 N -0.714 5.714 23 C 0.501 3.499 24 C -0.166 4.166 25 O -0.605 6.605 26 C -0.113 4.113 27 C -0.146 4.146 28 H 0.057 0.943 29 H 0.045 0.955 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.046 0.954 34 H 0.015 0.985 35 H 0.268 0.732 36 H 0.115 0.885 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.052 0.948 40 H 0.035 0.965 41 H 0.094 0.906 42 H 0.059 0.941 43 H 0.071 0.929 44 H 0.081 0.919 45 H 0.090 0.910 46 H 0.059 0.941 47 H 0.418 0.582 48 H 0.108 0.892 49 H 0.087 0.913 50 H 0.109 0.891 51 H 0.082 0.918 52 H 0.048 0.952 53 H 0.057 0.943 54 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.816 -9.897 27.517 31.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.336 5.336 4 C 0.105 3.895 5 C -0.570 4.570 6 H 0.047 0.953 7 C -0.188 4.188 8 N -0.585 5.585 9 Si 0.770 3.230 10 H -0.204 1.204 11 H -0.199 1.199 12 H -0.163 1.163 13 C 0.286 3.714 14 O -0.455 6.455 15 C -0.079 4.079 16 N -0.260 5.260 17 C -0.125 4.125 18 C -0.019 4.019 19 C -0.145 4.145 20 C -0.148 4.148 21 C 0.039 3.961 22 N -0.366 5.366 23 C 0.290 3.710 24 C -0.225 4.225 25 O -0.486 6.486 26 C -0.152 4.152 27 C -0.185 4.185 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.113 0.887 31 H 0.091 0.909 32 H 0.114 0.886 33 H 0.064 0.936 34 H 0.033 0.967 35 H 0.077 0.923 36 H 0.133 0.867 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.071 0.929 40 H 0.054 0.946 41 H 0.112 0.888 42 H 0.078 0.922 43 H 0.090 0.910 44 H 0.099 0.901 45 H 0.108 0.892 46 H 0.077 0.923 47 H 0.256 0.744 48 H 0.126 0.874 49 H 0.106 0.894 50 H 0.128 0.872 51 H 0.100 0.900 52 H 0.067 0.933 53 H 0.075 0.925 54 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.711 -8.740 27.005 30.338 hybrid contribution -0.357 0.341 -0.883 1.011 sum -11.068 -8.399 26.123 29.588 Atomic orbital electron populations 1.22152 0.94208 1.03566 1.01857 1.21748 0.95395 0.81259 1.03932 1.48076 1.64538 1.15188 1.05772 1.19241 0.94719 0.92870 0.82666 1.21558 0.97054 1.31877 1.06557 0.95281 1.25843 0.96716 0.97258 0.99005 1.70050 1.17342 1.46612 1.24495 0.85728 0.80446 0.78985 0.77846 1.20358 1.19926 1.16298 1.21230 0.77091 0.86770 0.86324 1.90609 1.46748 1.20475 1.87694 1.21966 1.02295 0.95867 0.87745 1.61801 1.52392 1.09240 1.02577 1.22459 0.93535 0.93879 1.02675 1.21890 0.96058 0.96479 0.87519 1.21502 1.02195 0.97857 0.92959 1.21683 0.94817 1.01321 0.97017 1.20905 0.97981 0.94225 0.82970 1.46093 1.12783 1.56025 1.21666 1.21624 0.82555 0.79443 0.87371 1.21903 1.05947 1.01817 0.92798 1.90715 1.34514 1.50314 1.73076 1.21720 1.01299 0.98668 0.93507 1.22151 0.98174 1.00358 0.97854 0.92392 0.93564 0.88733 0.90944 0.88639 0.93630 0.96700 0.92331 0.86690 0.89752 0.90617 0.92908 0.94627 0.88817 0.92238 0.90996 0.90064 0.89190 0.92313 0.74446 0.87399 0.89423 0.87203 0.89957 0.93349 0.92471 0.91064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.55 10.24 71.98 0.74 -2.81 16 2 C 0.10 2.87 5.93 86.38 0.51 3.38 16 3 N -0.60 -24.59 2.46 -826.16 -2.03 -26.61 16 4 C 0.23 11.28 4.23 85.64 0.36 11.65 16 5 C -0.53 -31.78 9.94 25.60 0.25 -31.53 16 6 H 0.03 1.94 8.06 -2.91 -0.02 1.91 16 7 C 0.01 0.58 5.47 84.65 0.46 1.04 16 8 N -0.94 -60.48 13.96 21.44 0.30 -60.18 16 9 Si 0.95 45.37 27.47 68.60 1.88 47.25 16 10 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 11 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 12 H -0.24 -10.35 6.54 99.48 0.65 -9.70 16 13 C 0.50 20.29 7.36 87.66 0.65 20.94 16 14 O -0.58 -29.29 13.91 -3.05 -0.04 -29.34 16 15 C 0.05 1.45 3.44 85.55 0.29 1.75 16 16 N -0.54 -14.86 4.49 -901.64 -4.05 -18.90 16 17 C 0.02 0.63 8.46 127.69 1.08 1.71 16 18 C 0.09 1.69 2.23 44.92 0.10 1.79 16 19 C -0.11 -1.81 5.00 30.59 0.15 -1.66 16 20 C -0.11 -1.22 5.39 30.59 0.16 -1.05 16 21 C 0.14 2.05 2.45 44.99 0.11 2.16 16 22 N -0.71 -7.39 5.08 -442.55 -2.25 -9.63 16 23 C 0.50 7.59 7.90 87.66 0.69 8.28 16 24 C -0.17 -0.94 10.30 71.24 0.73 -0.21 16 25 O -0.60 -16.09 16.76 -3.01 -0.05 -16.14 16 26 C -0.11 -1.69 5.50 30.59 0.17 -1.52 16 27 C -0.15 -2.50 4.51 30.59 0.14 -2.36 16 28 H 0.06 1.21 7.22 -2.39 -0.02 1.19 16 29 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 31 H 0.07 2.28 8.07 -2.39 -0.02 2.26 16 32 H 0.10 2.19 6.44 -2.38 -0.02 2.17 16 33 H 0.05 2.09 7.13 -2.39 -0.02 2.07 16 34 H 0.01 0.80 6.85 -2.38 -0.02 0.78 16 35 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 36 H 0.12 2.80 7.26 -2.39 -0.02 2.78 16 37 H 0.08 1.92 5.98 -2.39 -0.01 1.90 16 38 H 0.08 1.95 6.33 -2.39 -0.02 1.93 16 39 H 0.05 1.90 5.82 -2.39 -0.01 1.89 16 40 H 0.04 0.87 6.28 -2.39 -0.01 0.86 16 41 H 0.09 1.63 8.03 -2.39 -0.02 1.61 16 42 H 0.06 1.11 6.42 -2.39 -0.02 1.09 16 43 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 44 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 45 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.06 1.20 7.58 -2.39 -0.02 1.19 16 47 H 0.42 1.32 8.60 -92.71 -0.80 0.52 16 48 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 49 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 50 H 0.11 -0.03 8.14 -2.39 -0.02 -0.05 16 51 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 52 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 53 H 0.06 1.14 6.38 -2.39 -0.02 1.12 16 54 H 0.07 1.17 6.75 -2.39 -0.02 1.15 16 Total: -1.00 -86.95 412.17 0.41 -86.54 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.03 Total: 15.46 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: 6.61 Total: 11.55 kcal Atomic # 7 Polarization: -107.30 SS G_CDS: -8.02 Total: -115.33 kcal Atomic # 8 Polarization: -45.38 SS G_CDS: -0.09 Total: -45.48 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.88 Total: 47.25 kcal Total: -86.95 0.41 -86.54 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344141369.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.093 kcal (2) G-P(sol) polarization free energy of solvation -86.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds