Wall clock time and date at job start Sat Apr 11 2020 05:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47167 * 2 1 4 4 C 1.46495 * 120.00042 * 270.00211 * 3 2 1 5 5 C 1.50703 * 109.46999 * 269.99756 * 4 3 2 6 6 H 1.07995 * 119.99799 * 0.02562 * 5 4 3 7 7 C 1.37880 * 120.00036 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00051 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00015 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47045 * 90.00433 * 9 7 5 11 11 H 1.48502 * 109.47265 * 210.00257 * 9 7 5 12 12 H 1.48501 * 109.47359 * 330.00088 * 9 7 5 13 13 C 1.34775 * 119.99878 * 89.99656 * 3 2 1 14 14 O 1.21286 * 119.99928 * 179.97438 * 13 3 2 15 15 C 1.50703 * 120.00040 * 0.02562 * 13 3 2 16 16 N 1.46902 * 109.47091 * 179.97438 * 15 13 3 17 17 C 1.46856 * 110.99619 * 293.95260 * 16 15 13 18 18 C 1.53039 * 109.51787 * 185.84053 * 17 16 15 19 19 C 1.53123 * 109.31189 * 300.79882 * 18 17 16 20 20 C 1.53203 * 109.11533 * 57.63615 * 19 18 17 21 21 H 1.09007 * 109.52297 * 62.34418 * 20 19 18 22 22 C 1.53006 * 109.49217 * 182.41941 * 20 19 18 23 23 C 1.52993 * 109.47258 * 294.82575 * 22 20 19 24 24 N 1.46500 * 109.46881 * 179.97438 * 23 22 20 25 25 C 1.34780 * 120.00061 * 179.97438 * 24 23 22 26 26 C 1.50696 * 120.00270 * 180.02562 * 25 24 23 27 27 O 1.21288 * 119.99735 * 0.02562 * 25 24 23 28 28 C 1.46846 * 111.00121 * 58.16143 * 16 15 13 29 29 H 1.08999 * 109.46977 * 59.99986 * 1 2 3 30 30 H 1.09008 * 109.47098 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47277 * 299.99688 * 1 2 3 32 32 H 1.08996 * 109.47228 * 239.99831 * 2 1 3 33 33 H 1.08999 * 109.46977 * 120.00014 * 2 1 3 34 34 H 1.09003 * 109.47080 * 29.99851 * 4 3 2 35 35 H 1.08996 * 109.47300 * 149.99826 * 4 3 2 36 36 H 0.96993 * 120.00339 * 180.02562 * 8 7 5 37 37 H 1.09000 * 109.47108 * 59.99639 * 15 13 3 38 38 H 1.09002 * 109.47016 * 299.99547 * 15 13 3 39 39 H 1.09000 * 109.46462 * 65.82793 * 17 16 15 40 40 H 1.09001 * 109.45242 * 305.84772 * 17 16 15 41 41 H 1.09002 * 109.50563 * 60.76214 * 18 17 16 42 42 H 1.09003 * 109.50107 * 180.84195 * 18 17 16 43 43 H 1.08994 * 109.52349 * 177.58253 * 19 18 17 44 44 H 1.08997 * 109.52263 * 297.77214 * 19 18 17 45 45 H 1.08999 * 109.46682 * 54.82568 * 22 20 19 46 46 H 1.08998 * 109.47120 * 174.82282 * 22 20 19 47 47 H 1.08998 * 109.47504 * 300.00130 * 23 22 20 48 48 H 1.09010 * 109.47067 * 60.00139 * 23 22 20 49 49 H 0.96998 * 120.00326 * 0.02562 * 24 23 22 50 50 H 1.08999 * 109.47167 * 359.97438 * 26 25 24 51 51 H 1.08995 * 109.47421 * 119.99908 * 26 25 24 52 52 H 1.08998 * 109.47147 * 240.00392 * 26 25 24 53 53 H 1.09004 * 109.46012 * 294.17710 * 28 16 15 54 54 H 1.08994 * 109.46057 * 54.14289 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3426 1.2303 -1.0961 7 6 4.1491 2.3897 -2.8779 8 7 3.3491 3.1257 -3.6181 9 14 5.9134 2.0968 -3.4168 10 1 5.9775 0.8754 -4.2591 11 1 6.3920 3.2640 -4.2002 12 1 6.7736 1.9181 -2.2195 13 6 2.2429 2.0165 1.1672 14 8 2.6476 3.1599 1.1672 15 6 1.9922 1.3059 2.4723 16 7 2.3108 2.2058 3.5889 17 6 3.7471 2.5094 3.6267 18 6 4.0642 3.3268 4.8811 19 6 3.2505 4.6238 4.8594 20 6 1.7603 4.2797 4.7705 21 1 1.4629 3.7169 5.6554 22 6 0.9425 5.5702 4.6874 23 6 1.0953 6.3556 5.9914 24 7 0.3127 7.5915 5.9116 25 6 0.2964 8.4473 6.9528 26 6 -0.5091 9.7183 6.8710 27 8 0.9300 8.1943 7.9556 28 6 1.5100 3.4347 3.5194 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.5816 1.6877 -2.0283 35 1 2.0955 3.1410 -1.1384 36 1 3.6748 3.5156 -4.4443 37 1 2.6227 0.4187 2.5299 38 1 0.9443 1.0115 2.5302 39 1 4.0206 3.0827 2.7409 40 1 4.3144 1.5789 3.6465 41 1 3.8038 2.7486 5.7676 42 1 5.1277 3.5647 4.9012 43 1 3.4412 5.1886 5.7718 44 1 3.5388 5.2201 3.9938 45 1 1.3017 6.1750 3.8548 46 1 -0.1081 5.3252 4.5319 47 1 0.7362 5.7509 6.8241 48 1 2.1460 6.6007 6.1470 49 1 -0.1943 7.7936 5.1098 50 1 -1.0057 9.7720 5.9022 51 1 -1.2569 9.7263 7.6639 52 1 0.1531 10.5762 6.9874 53 1 1.7940 4.0037 2.6341 54 1 0.4527 3.1764 3.4612 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347642809.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:01 Heat of formation + Delta-G solvation = -109.671917 kcal Electronic energy + Delta-G solvation = -30660.351265 eV Core-core repulsion = 26630.351937 eV Total energy + Delta-G solvation = -4029.999328 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.41499 -40.60706 -39.41318 -37.11371 -36.47669 -35.02261 -34.62153 -33.01318 -31.59803 -31.12589 -29.87607 -28.69058 -27.79891 -25.27138 -24.54102 -24.18208 -23.56318 -22.18243 -21.55217 -20.64459 -19.85887 -18.64577 -17.93514 -17.76962 -17.36410 -17.22757 -16.72450 -16.55431 -16.32375 -15.92496 -15.82873 -15.38739 -15.22557 -15.05377 -14.64341 -14.52222 -14.50466 -14.04878 -13.97613 -13.56701 -13.42896 -13.35168 -13.25174 -13.12335 -13.07381 -12.99644 -12.92444 -12.68270 -12.51086 -12.36570 -12.28056 -12.14750 -11.86424 -11.84755 -11.64794 -11.56946 -11.29823 -11.13747 -11.05885 -10.92692 -10.66908 -10.10398 -9.40701 -9.04545 -8.24932 -6.39608 1.32899 1.35534 1.45565 1.63390 1.82881 2.29188 2.30313 2.47142 2.95495 3.04252 3.70594 3.75215 3.87691 3.88468 3.99860 4.11007 4.15965 4.23853 4.28841 4.38134 4.44672 4.49373 4.53013 4.57659 4.62217 4.65746 4.66552 4.69918 4.73559 4.85258 4.92782 4.95617 4.98165 5.00495 5.05777 5.06994 5.11445 5.13270 5.15241 5.21256 5.29166 5.33577 5.39705 5.45531 5.54502 5.60091 5.86956 5.99284 6.05183 6.08510 6.57338 6.68550 6.83491 7.25314 7.26866 7.51372 8.81703 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012383 B = 0.002407 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.637595 B =11628.660488 C =12168.801028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.099 3.901 3 N -0.603 5.603 4 C 0.264 3.736 5 C -0.538 4.538 6 H 0.050 0.950 7 C 0.007 3.993 8 N -0.928 5.928 9 Si 0.965 3.035 10 H -0.263 1.263 11 H -0.281 1.281 12 H -0.274 1.274 13 C 0.465 3.535 14 O -0.584 6.584 15 C 0.044 3.956 16 N -0.503 5.503 17 C 0.041 3.959 18 C -0.107 4.107 19 C -0.116 4.116 20 C -0.067 4.067 21 H 0.088 0.912 22 C -0.114 4.114 23 C 0.122 3.878 24 N -0.721 5.721 25 C 0.500 3.500 26 C -0.164 4.164 27 O -0.605 6.605 28 C 0.041 3.959 29 H 0.035 0.965 30 H 0.095 0.905 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.102 0.898 34 H 0.017 0.983 35 H -0.006 1.006 36 H 0.267 0.733 37 H 0.118 0.882 38 H 0.127 0.873 39 H 0.022 0.978 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.039 0.961 45 H 0.061 0.939 46 H 0.084 0.916 47 H 0.063 0.937 48 H 0.056 0.944 49 H 0.416 0.584 50 H 0.103 0.897 51 H 0.103 0.897 52 H 0.099 0.901 53 H 0.043 0.957 54 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.779 0.879 18.240 20.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.024 4.024 3 N -0.335 5.335 4 C 0.142 3.858 5 C -0.577 4.577 6 H 0.069 0.931 7 C -0.192 4.192 8 N -0.568 5.568 9 Si 0.789 3.211 10 H -0.188 1.188 11 H -0.207 1.207 12 H -0.199 1.199 13 C 0.253 3.747 14 O -0.465 6.465 15 C -0.088 4.088 16 N -0.225 5.225 17 C -0.087 4.087 18 C -0.145 4.145 19 C -0.153 4.153 20 C -0.087 4.087 21 H 0.106 0.894 22 C -0.152 4.152 23 C -0.001 4.001 24 N -0.374 5.374 25 C 0.289 3.711 26 C -0.223 4.223 27 O -0.487 6.487 28 C -0.087 4.087 29 H 0.054 0.946 30 H 0.113 0.887 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.120 0.880 34 H 0.035 0.965 35 H 0.012 0.988 36 H 0.075 0.925 37 H 0.136 0.864 38 H 0.145 0.855 39 H 0.041 0.959 40 H 0.091 0.909 41 H 0.100 0.900 42 H 0.086 0.914 43 H 0.093 0.907 44 H 0.058 0.942 45 H 0.080 0.920 46 H 0.103 0.897 47 H 0.082 0.918 48 H 0.074 0.926 49 H 0.253 0.747 50 H 0.122 0.878 51 H 0.121 0.879 52 H 0.118 0.882 53 H 0.061 0.939 54 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.266 1.123 19.199 21.348 hybrid contribution 1.074 0.631 -2.250 2.572 sum -8.192 1.754 16.949 18.907 Atomic orbital electron populations 1.22140 0.94524 1.03490 1.01607 1.21740 0.95345 0.81448 1.03829 1.48464 1.63533 1.15020 1.06434 1.18622 0.94984 0.91386 0.80764 1.21680 0.97922 1.31726 1.06366 0.93125 1.25843 1.02253 0.94562 0.96531 1.70046 1.37731 1.34293 1.14767 0.85456 0.79185 0.78224 0.78199 1.18778 1.20680 1.19895 1.22701 0.77367 0.87174 0.87462 1.90561 1.47958 1.20432 1.87584 1.22481 1.05387 0.96775 0.84150 1.62535 1.05833 1.15551 1.38595 1.22233 0.88658 0.99796 0.98050 1.21508 0.99642 0.95910 0.97414 1.21676 0.95133 0.97310 1.01226 1.20996 0.94685 0.94860 0.98131 0.89416 1.21667 1.01518 0.95771 0.96267 1.21305 0.95625 0.85139 0.98080 1.46178 1.50474 1.21736 1.18990 1.21634 0.81130 0.86399 0.81927 1.21871 1.00942 0.93233 1.06260 1.90702 1.46886 1.77938 1.33204 1.22389 0.97220 0.90931 0.98176 0.94572 0.88667 0.91908 0.91356 0.88013 0.96513 0.98786 0.92458 0.86381 0.85534 0.95923 0.90862 0.90046 0.91371 0.90688 0.94219 0.91983 0.89701 0.91850 0.92616 0.74705 0.87786 0.87889 0.88248 0.93857 0.90694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.71 10.24 71.98 0.74 -2.98 16 2 C 0.10 2.87 5.93 86.38 0.51 3.38 16 3 N -0.60 -24.66 2.46 -826.17 -2.03 -26.69 16 4 C 0.26 14.14 5.16 85.63 0.44 14.58 16 5 C -0.54 -30.96 9.39 25.60 0.24 -30.72 16 6 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 7 C 0.01 0.40 5.46 84.66 0.46 0.86 16 8 N -0.93 -56.27 13.29 21.45 0.28 -55.99 16 9 Si 0.96 45.06 29.54 68.60 2.03 47.09 16 10 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 12 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 13 C 0.46 18.24 7.09 87.66 0.62 18.86 16 14 O -0.58 -28.30 11.20 -3.05 -0.03 -28.33 16 15 C 0.04 1.17 4.41 85.56 0.38 1.55 16 16 N -0.50 -13.65 4.86 -900.90 -4.38 -18.03 16 17 C 0.04 1.20 5.10 86.32 0.44 1.64 16 18 C -0.11 -2.55 6.09 30.65 0.19 -2.37 16 19 C -0.12 -2.75 4.99 30.70 0.15 -2.59 16 20 C -0.07 -1.46 2.35 -10.71 -0.03 -1.49 16 21 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 22 C -0.11 -2.07 4.80 30.59 0.15 -1.92 16 23 C 0.12 2.29 5.43 86.38 0.47 2.76 16 24 N -0.72 -11.41 5.56 -463.06 -2.57 -13.98 16 25 C 0.50 9.60 7.94 87.66 0.70 10.30 16 26 C -0.16 -1.54 10.39 71.23 0.74 -0.80 16 27 O -0.61 -17.96 17.10 -3.05 -0.05 -18.01 16 28 C 0.04 1.11 4.26 86.32 0.37 1.47 16 29 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 31 H 0.06 1.32 7.22 -2.39 -0.02 1.30 16 32 H 0.07 2.16 8.07 -2.39 -0.02 2.15 16 33 H 0.10 2.22 6.44 -2.39 -0.02 2.20 16 34 H 0.02 0.93 8.07 -2.39 -0.02 0.91 16 35 H -0.01 -0.37 7.42 -2.39 -0.02 -0.39 16 36 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 37 H 0.12 2.71 7.32 -2.39 -0.02 2.69 16 38 H 0.13 2.68 7.19 -2.39 -0.02 2.66 16 39 H 0.02 0.88 6.00 -2.39 -0.01 0.86 16 40 H 0.07 2.00 8.06 -2.39 -0.02 1.98 16 41 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.07 1.57 6.70 -2.39 -0.02 1.55 16 44 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 48 H 0.06 1.22 6.63 -2.38 -0.02 1.20 16 49 H 0.42 4.11 8.31 -92.71 -0.77 3.34 16 50 H 0.10 0.39 7.91 -2.39 -0.02 0.37 16 51 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 52 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 53 H 0.04 1.58 5.36 -2.38 -0.01 1.57 16 54 H 0.07 1.82 8.12 -2.39 -0.02 1.81 16 Total: -1.00 -80.81 418.86 -0.08 -80.89 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: 0.10 Total: 20.51 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: 6.57 Total: 12.54 kcal Atomic # 7 Polarization: -106.00 SS G_CDS: -8.69 Total: -114.69 kcal Atomic # 8 Polarization: -46.26 SS G_CDS: -0.09 Total: -46.34 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -80.81 -0.08 -80.89 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347642809.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.779 kcal (2) G-P(sol) polarization free energy of solvation -80.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds