Wall clock time and date at job start Sat Apr 11 2020 05:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47355 * 2 1 4 4 C 1.46496 * 120.00109 * 286.44625 * 3 2 1 5 5 C 1.52996 * 109.47093 * 270.00144 * 4 3 2 6 6 C 1.34771 * 119.99859 * 106.44708 * 3 2 1 7 7 O 1.21588 * 120.00295 * 173.14166 * 6 3 2 8 8 N 1.34780 * 120.00524 * 353.13911 * 6 3 2 9 9 C 1.46927 * 120.63569 * 162.15205 * 8 6 3 10 10 C 1.53186 * 108.89273 * 126.46448 * 9 8 6 11 11 C 1.53046 * 109.31304 * 54.56532 * 10 9 8 12 12 C 1.50704 * 109.45679 * 178.62973 * 11 10 9 13 13 O 1.21273 * 120.00256 * 359.97438 * 12 11 10 14 14 N 1.34778 * 119.99604 * 180.02562 * 12 11 10 15 15 C 1.46494 * 119.99895 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.47379 * 179.97438 * 15 14 12 17 17 C 1.53003 * 109.47688 * 180.02562 * 16 15 14 18 18 C 1.50697 * 109.47396 * 179.97438 * 17 16 15 19 19 H 1.08004 * 119.99789 * 0.02562 * 18 17 16 20 20 C 1.37875 * 119.99769 * 179.97438 * 18 17 16 21 21 N 1.31509 * 120.00452 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 119.99563 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47360 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46524 * 120.00335 * 22 20 18 25 25 H 1.48495 * 109.47125 * 240.00187 * 22 20 18 26 26 C 1.53037 * 109.53841 * 298.63367 * 11 10 9 27 27 C 1.46966 * 120.64692 * 341.97354 * 8 6 3 28 28 H 1.09004 * 109.46811 * 300.00029 * 1 2 3 29 29 H 1.08996 * 109.47037 * 59.99436 * 1 2 3 30 30 H 1.08995 * 109.47269 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46811 * 239.99971 * 2 1 3 32 32 H 1.09002 * 109.46788 * 120.00202 * 2 1 3 33 33 H 1.09001 * 109.47225 * 30.00341 * 4 3 2 34 34 H 1.09004 * 109.47457 * 149.99888 * 4 3 2 35 35 H 1.09000 * 109.47742 * 60.00030 * 5 4 3 36 36 H 1.09001 * 109.47176 * 180.02562 * 5 4 3 37 37 H 1.09004 * 109.47253 * 299.99661 * 5 4 3 38 38 H 1.09001 * 109.58266 * 6.60234 * 9 8 6 39 39 H 1.09000 * 109.58197 * 246.32239 * 9 8 6 40 40 H 1.09000 * 109.49896 * 174.51380 * 10 9 8 41 41 H 1.08998 * 109.50000 * 294.58319 * 10 9 8 42 42 H 1.08996 * 109.46132 * 58.65255 * 11 10 9 43 43 H 0.97003 * 120.00275 * 359.97438 * 14 12 11 44 44 H 1.08996 * 109.47244 * 299.99578 * 15 14 12 45 45 H 1.08995 * 109.47234 * 59.99937 * 15 14 12 46 46 H 1.09005 * 109.47266 * 299.99913 * 16 15 14 47 47 H 1.09002 * 109.47248 * 59.99856 * 16 15 14 48 48 H 1.09005 * 109.46655 * 300.00237 * 17 16 15 49 49 H 1.09002 * 109.46934 * 59.99613 * 17 16 15 50 50 H 0.97000 * 120.00560 * 179.97438 * 21 20 18 51 51 H 1.08998 * 109.49849 * 181.31709 * 26 11 10 52 52 H 1.09005 * 109.50096 * 301.41783 * 26 11 10 53 53 H 1.08998 * 109.46535 * 113.75347 * 27 8 6 54 54 H 1.08997 * 109.71799 * 353.45967 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.9240 2.1915 -1.2168 5 6 3.1954 2.0124 -2.0488 6 6 2.5546 1.9063 1.1194 7 8 3.0725 3.0059 1.0875 8 7 2.5168 1.2127 2.2744 9 6 3.4088 1.5634 3.3880 10 6 2.5665 1.7784 4.6493 11 6 1.7056 0.5383 4.9005 12 6 0.9005 0.7327 6.1596 13 8 1.0053 1.7612 6.7936 14 7 0.0648 -0.2369 6.5815 15 6 -0.7174 -0.0481 7.8056 16 6 -1.5784 -1.2877 8.0570 17 6 -2.3959 -1.0904 9.3352 18 6 -3.2443 -2.3110 9.5824 19 1 -3.2041 -3.1444 8.8966 20 6 -4.0709 -2.3643 10.6845 21 7 -4.1195 -1.3497 11.5198 22 14 -5.1232 -3.8772 10.9905 23 1 -4.8876 -4.8704 9.9121 24 1 -4.7615 -4.4748 12.3010 25 1 -6.5565 -3.4891 11.0021 26 6 0.7582 0.3248 3.7178 27 6 1.5799 0.0934 2.4457 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.0602 1.8722 -1.7999 34 1 1.8116 3.2415 -0.9463 35 1 3.3078 0.9625 -2.3193 36 1 3.1253 2.6157 -2.9539 37 1 4.0592 2.3318 -1.4657 38 1 3.9490 2.4794 3.1487 39 1 4.1188 0.7537 3.5563 40 1 3.2246 1.9432 5.5025 41 1 1.9227 2.6473 4.5132 42 1 2.3493 -0.3342 5.0122 43 1 -0.0188 -1.0597 6.0746 44 1 -0.0428 0.1029 8.6483 45 1 -1.3611 0.8244 7.6946 46 1 -2.2532 -1.4384 7.2143 47 1 -0.9350 -2.1606 8.1679 48 1 -1.7214 -0.9394 10.1781 49 1 -3.0392 -0.2176 9.2239 50 1 -4.7013 -1.3870 12.2951 51 1 0.1292 -0.5448 3.9078 52 1 0.1310 1.2072 3.5901 53 1 2.1391 -0.8378 2.5364 54 1 0.9131 0.0369 1.5853 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349298873.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:08 Heat of formation + Delta-G solvation = -54.604854 kcal Electronic energy + Delta-G solvation = -30226.088102 eV Core-core repulsion = 26198.476661 eV Total energy + Delta-G solvation = -4027.611441 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.13159 -40.89444 -38.38280 -37.65410 -36.95138 -35.21244 -34.44979 -33.37992 -32.74850 -31.49579 -30.64629 -28.76406 -26.81921 -25.15503 -24.90266 -24.00219 -23.82339 -22.31200 -22.06208 -20.98581 -20.34762 -18.59692 -18.33015 -17.97151 -17.64974 -16.89333 -16.73379 -16.64564 -16.41420 -16.08781 -15.80519 -15.52953 -15.35565 -14.94774 -14.88964 -14.51542 -14.30482 -14.15584 -14.11443 -13.77215 -13.72649 -13.44118 -13.34220 -13.08970 -12.91917 -12.77405 -12.71079 -12.54205 -12.52350 -12.34240 -12.23586 -11.89849 -11.73733 -11.71741 -11.66791 -11.61184 -11.46747 -11.21960 -10.97132 -10.56060 -10.55458 -10.08296 -9.95255 -9.34184 -8.19052 -6.30715 1.42668 1.42747 1.55943 1.57433 1.64825 2.02608 2.21903 2.43317 2.75523 3.14983 3.55556 3.63481 3.77134 3.91286 4.05175 4.08750 4.17585 4.20260 4.21913 4.28333 4.32645 4.39052 4.43359 4.52106 4.55683 4.57896 4.64864 4.70402 4.77346 4.80122 4.82214 4.84789 4.94004 4.95099 5.02086 5.04525 5.06388 5.11463 5.18221 5.27746 5.29971 5.39748 5.46068 5.51822 5.54317 5.69087 5.71070 5.84715 5.92738 6.22312 6.61309 6.86349 6.87572 7.29657 7.39261 7.49401 8.93221 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.020109 B = 0.001848 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.071274 B =15151.625168 C =16174.126440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.058 3.942 3 N -0.623 5.623 4 C 0.125 3.875 5 C -0.159 4.159 6 C 0.700 3.300 7 O -0.637 6.637 8 N -0.630 5.630 9 C 0.137 3.863 10 C -0.108 4.108 11 C -0.094 4.094 12 C 0.507 3.493 13 O -0.595 6.595 14 N -0.710 5.710 15 C 0.129 3.871 16 C -0.099 4.099 17 C 0.021 3.979 18 C -0.538 4.538 19 H 0.070 0.930 20 C -0.006 4.006 21 N -0.936 5.936 22 Si 0.968 3.032 23 H -0.255 1.255 24 H -0.281 1.281 25 H -0.281 1.281 26 C -0.124 4.124 27 C 0.055 3.945 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.128 0.872 33 H 0.103 0.897 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.031 0.969 38 H 0.070 0.930 39 H 0.096 0.904 40 H 0.076 0.924 41 H 0.040 0.960 42 H 0.135 0.865 43 H 0.417 0.583 44 H 0.045 0.955 45 H 0.043 0.957 46 H 0.071 0.929 47 H 0.071 0.929 48 H -0.010 1.010 49 H -0.011 1.011 50 H 0.262 0.738 51 H 0.111 0.889 52 H 0.047 0.953 53 H 0.108 0.892 54 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.261 -3.359 -30.749 34.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.063 4.063 3 N -0.360 5.360 4 C 0.002 3.998 5 C -0.217 4.217 6 C 0.403 3.597 7 O -0.518 6.518 8 N -0.368 5.368 9 C 0.013 3.987 10 C -0.147 4.147 11 C -0.115 4.115 12 C 0.295 3.705 13 O -0.475 6.475 14 N -0.362 5.362 15 C 0.004 3.996 16 C -0.137 4.137 17 C -0.017 4.017 18 C -0.576 4.576 19 H 0.088 0.912 20 C -0.203 4.203 21 N -0.577 5.577 22 Si 0.793 3.207 23 H -0.179 1.179 24 H -0.207 1.207 25 H -0.207 1.207 26 C -0.163 4.163 27 C -0.065 4.065 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.116 0.884 31 H 0.109 0.891 32 H 0.145 0.855 33 H 0.121 0.879 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.050 0.950 38 H 0.089 0.911 39 H 0.114 0.886 40 H 0.094 0.906 41 H 0.059 0.941 42 H 0.152 0.848 43 H 0.255 0.745 44 H 0.064 0.936 45 H 0.062 0.938 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.008 0.992 49 H 0.008 0.992 50 H 0.071 0.929 51 H 0.129 0.871 52 H 0.066 0.934 53 H 0.125 0.875 54 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 14.522 -2.009 -30.190 33.561 hybrid contribution -0.760 -0.030 0.947 1.215 sum 13.761 -2.038 -29.243 32.384 Atomic orbital electron populations 1.22356 0.94800 1.04479 1.02383 1.22890 0.95086 0.81706 1.06608 1.47310 1.64207 1.14913 1.09522 1.21360 0.99195 0.95007 0.84248 1.22053 0.97243 1.02667 0.99763 1.16218 0.79045 0.83114 0.81336 1.90868 1.53156 1.21899 1.85908 1.47242 1.41349 1.35692 1.12485 1.21451 0.91384 1.02055 0.83764 1.21629 0.98527 0.96625 0.97918 1.21349 0.97440 1.01562 0.91146 1.21399 0.79599 0.82486 0.87012 1.90692 1.67556 1.29883 1.59395 1.45954 1.42959 1.20574 1.26753 1.21198 0.93398 0.98566 0.86420 1.21580 0.97540 0.95855 0.98749 1.18972 0.94061 0.95793 0.92863 1.21720 1.23818 1.03027 1.09062 0.91230 1.26052 0.98688 0.99606 0.95954 1.70123 1.40042 1.32939 1.14571 0.85351 0.77964 0.79089 0.78337 1.17897 1.20733 1.20740 1.22033 0.97501 1.03444 0.93314 1.23646 0.93325 0.89208 1.00336 0.92493 0.91603 0.88378 0.89096 0.85491 0.87894 0.92682 0.91337 0.90414 0.94957 0.91098 0.88620 0.90580 0.94147 0.84751 0.74493 0.93617 0.93849 0.91078 0.91055 0.99162 0.99222 0.92895 0.87115 0.93375 0.87469 0.83166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.75 9.13 71.98 0.66 -0.09 16 2 C 0.06 0.33 5.54 86.38 0.48 0.81 16 3 N -0.62 -8.87 2.52 -894.40 -2.25 -11.12 16 4 C 0.12 1.63 6.01 86.38 0.52 2.15 16 5 C -0.16 -1.87 10.24 71.98 0.74 -1.13 16 6 C 0.70 15.28 8.01 179.06 1.43 16.72 16 7 O -0.64 -20.12 15.54 -3.99 -0.06 -20.18 16 8 N -0.63 -10.42 2.95 -892.89 -2.63 -13.06 16 9 C 0.14 2.39 6.43 86.36 0.56 2.95 16 10 C -0.11 -2.25 4.65 30.67 0.14 -2.11 16 11 C -0.09 -1.57 2.49 -11.51 -0.03 -1.60 16 12 C 0.51 13.67 7.15 87.66 0.63 14.30 16 13 O -0.59 -22.69 15.98 -3.01 -0.05 -22.73 16 14 N -0.71 -17.63 5.44 -463.08 -2.52 -20.15 16 15 C 0.13 4.41 5.67 86.38 0.49 4.90 16 16 C -0.10 -3.65 5.27 30.60 0.16 -3.49 16 17 C 0.02 1.07 4.97 29.85 0.15 1.21 16 18 C -0.54 -29.43 9.11 25.60 0.23 -29.20 16 19 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 20 C -0.01 -0.31 5.46 84.66 0.46 0.15 16 21 N -0.94 -56.93 13.29 21.45 0.28 -56.65 16 22 Si 0.97 43.05 29.54 68.60 2.03 45.08 16 23 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 24 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 25 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 26 C -0.12 -1.51 5.27 30.67 0.16 -1.35 16 27 C 0.05 0.47 4.32 86.36 0.37 0.84 16 28 H 0.06 0.41 6.87 -2.38 -0.02 0.39 16 29 H 0.06 0.31 7.33 -2.39 -0.02 0.29 16 30 H 0.10 0.01 8.14 -2.39 -0.02 -0.01 16 31 H 0.09 0.26 8.14 -2.38 -0.02 0.24 16 32 H 0.13 0.48 3.72 -23.07 -0.09 0.39 16 33 H 0.10 0.74 7.22 -2.39 -0.02 0.73 16 34 H 0.05 1.02 7.53 -2.39 -0.02 1.00 16 35 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.03 0.57 8.14 -2.38 -0.02 0.55 16 38 H 0.07 1.60 7.08 -2.39 -0.02 1.58 16 39 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.08 1.68 8.07 -2.39 -0.02 1.66 16 41 H 0.04 1.11 8.13 -2.39 -0.02 1.09 16 42 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.42 6.92 7.87 -92.71 -0.73 6.19 16 44 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 47 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 48 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 49 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 50 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 51 H 0.11 0.76 7.52 -2.39 -0.02 0.74 16 52 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 53 H 0.11 0.27 7.67 -2.39 -0.02 0.25 16 54 H 0.15 0.95 1.34 -22.44 -0.03 0.92 16 Total: -1.00 -83.65 416.69 2.00 -81.65 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: 0.05 Total: 12.10 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: 7.15 Total: 5.06 kcal Atomic # 7 Polarization: -93.85 SS G_CDS: -7.12 Total: -100.97 kcal Atomic # 8 Polarization: -42.80 SS G_CDS: -0.11 Total: -42.91 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -83.65 2.00 -81.65 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349298873.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.044 kcal (2) G-P(sol) polarization free energy of solvation -83.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds