Wall clock time and date at job start Sat Apr 11 2020 05:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46896 * 109.47159 * 2 1 4 4 C 1.47022 * 111.00266 * 66.04336 * 3 2 1 5 5 C 1.53093 * 109.25757 * 177.61144 * 4 3 2 6 6 O 1.43018 * 109.26181 * 56.84862 * 5 4 3 7 7 C 1.43014 * 113.73573 * 301.32877 * 6 5 4 8 8 H 1.08996 * 109.51023 * 298.68642 * 7 6 5 9 9 C 1.50707 * 109.50299 * 178.60325 * 7 6 5 10 10 O 1.21276 * 120.00150 * 349.65545 * 9 7 6 11 11 N 1.34776 * 119.99892 * 169.65293 * 9 7 6 12 12 C 1.46918 * 120.62962 * 174.66721 * 11 9 7 13 13 C 1.53196 * 108.77724 * 233.63190 * 12 11 9 14 14 C 1.53037 * 109.31053 * 305.36451 * 13 12 11 15 15 C 1.53001 * 109.46169 * 181.38206 * 14 13 12 16 16 C 1.52995 * 109.47444 * 174.97393 * 15 14 13 17 17 N 1.46500 * 109.47515 * 180.02562 * 16 15 14 18 18 C 1.36937 * 120.00316 * 180.02562 * 17 16 15 19 19 H 1.07996 * 119.99497 * 359.97438 * 18 17 16 20 20 C 1.38811 * 120.00091 * 179.72874 * 18 17 16 21 21 N 1.31624 * 119.99756 * 0.26799 * 20 18 17 22 22 Si 1.86796 * 120.00033 * 180.27317 * 20 18 17 23 23 H 1.48503 * 109.47101 * 59.99689 * 22 20 18 24 24 H 1.48496 * 109.47107 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47121 * 299.99567 * 22 20 18 26 26 C 1.53041 * 109.52777 * 61.37330 * 14 13 12 27 27 C 1.46928 * 120.63037 * 354.69325 * 11 9 7 28 28 C 1.47019 * 111.00061 * 302.41051 * 3 2 1 29 29 H 1.09000 * 109.47387 * 60.00556 * 1 2 3 30 30 H 1.09000 * 109.47260 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47421 * 300.00199 * 1 2 3 32 32 H 1.09002 * 109.47421 * 239.99801 * 2 1 3 33 33 H 1.09009 * 109.47134 * 119.99492 * 2 1 3 34 34 H 1.08994 * 109.50121 * 57.67401 * 4 3 2 35 35 H 1.09003 * 109.53776 * 297.56895 * 4 3 2 36 36 H 1.09001 * 109.50956 * 296.91012 * 5 4 3 37 37 H 1.09007 * 109.50568 * 176.78689 * 5 4 3 38 38 H 1.09005 * 109.58720 * 113.84951 * 12 11 9 39 39 H 1.08999 * 109.59167 * 353.41821 * 12 11 9 40 40 H 1.08993 * 109.50006 * 185.41757 * 13 12 11 41 41 H 1.08996 * 109.52574 * 65.32895 * 13 12 11 42 42 H 1.09004 * 109.46557 * 301.35886 * 14 13 12 43 43 H 1.09001 * 109.46732 * 54.97175 * 15 14 13 44 44 H 1.09002 * 109.47229 * 294.97702 * 15 14 13 45 45 H 1.09001 * 109.47333 * 60.00150 * 16 15 14 46 46 H 1.09002 * 109.47160 * 300.00352 * 16 15 14 47 47 H 0.97003 * 119.99637 * 0.02562 * 17 16 15 48 48 H 0.97000 * 119.99422 * 180.02562 * 21 20 18 49 49 H 1.09003 * 109.50195 * 58.57526 * 26 14 13 50 50 H 1.09000 * 109.50462 * 178.67523 * 26 14 13 51 51 H 1.08999 * 109.58445 * 246.15493 * 27 11 9 52 52 H 1.09001 * 109.58762 * 6.43311 * 27 11 9 53 53 H 1.09007 * 109.50565 * 62.45364 * 28 3 2 54 54 H 1.09001 * 109.50666 * 302.32938 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.6698 2.0675 1.2543 5 6 2.2491 3.4845 1.2366 6 8 1.7593 4.1801 0.0869 7 6 2.0827 3.5433 -1.1522 8 1 3.1657 3.4937 -1.2643 9 6 1.4945 4.3337 -2.2926 10 8 0.7089 5.2298 -2.0677 11 7 1.8416 4.0447 -3.5624 12 6 1.1909 4.7260 -4.6898 13 6 0.6391 3.6697 -5.6524 14 6 1.7662 2.7176 -6.0591 15 6 1.2267 1.6817 -7.0474 16 6 2.3780 0.8085 -7.5502 17 7 1.8615 -0.1830 -8.4970 18 6 2.7144 -1.0809 -9.0814 19 1 3.7678 -1.0578 -8.8446 20 6 2.2241 -2.0240 -9.9742 21 7 0.9402 -2.0518 -10.2630 22 14 3.3863 -3.2537 -10.7656 23 1 4.0415 -4.0662 -9.7093 24 1 2.6203 -4.1462 -11.6722 25 1 4.4210 -2.5267 -11.5441 26 6 2.3065 2.0045 -4.8175 27 6 2.8775 3.0420 -3.8456 28 6 1.5017 2.1269 -1.1587 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 2.0849 1.5151 2.0972 35 1 0.5853 2.1188 1.3513 36 1 3.3370 3.4325 1.1944 37 1 1.9441 4.0137 2.1395 38 1 1.9188 5.3492 -5.2095 39 1 0.3739 5.3457 -4.3201 40 1 0.2389 4.1597 -6.5398 41 1 -0.1530 3.1060 -5.1595 42 1 2.5689 3.2852 -6.5300 43 1 0.7624 2.1921 -7.8913 44 1 0.4863 1.0556 -6.5495 45 1 2.8423 0.2981 -6.7063 46 1 3.1183 1.4346 -8.0481 47 1 0.9153 -0.2035 -8.7098 48 1 0.5976 -2.7110 -10.8866 49 1 1.4987 1.4569 -4.3320 50 1 3.0932 1.3093 -5.1105 51 1 3.7428 3.5278 -4.2964 52 1 3.1752 2.5523 -2.9184 53 1 0.4144 2.1792 -1.1011 54 1 1.7940 1.6178 -2.0772 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753577397.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:35 Heat of formation + Delta-G solvation = -88.794102 kcal Electronic energy + Delta-G solvation = -31084.102948 eV Core-core repulsion = 27055.008950 eV Total energy + Delta-G solvation = -4029.093998 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.85096 -40.31878 -38.94721 -37.32779 -36.85142 -35.12786 -33.44747 -32.65621 -31.81423 -31.54410 -29.93293 -27.98383 -26.68745 -25.70385 -24.57975 -24.31961 -23.82930 -22.47162 -21.45517 -21.08768 -20.06710 -19.12155 -18.56185 -17.80618 -17.30278 -16.72988 -16.57382 -16.46585 -16.14565 -15.99286 -15.80893 -15.47612 -15.42394 -15.29534 -14.95307 -14.88304 -14.72567 -14.40904 -14.17783 -13.98615 -13.74373 -13.43424 -13.19224 -13.03479 -12.86189 -12.80931 -12.79140 -12.53202 -12.42647 -12.28846 -12.19247 -12.13172 -11.99427 -11.91298 -11.63153 -11.60115 -11.37489 -11.18572 -10.86098 -10.80275 -10.73609 -9.72682 -9.47101 -8.97144 -7.93969 -5.22710 1.37551 1.48251 1.51467 1.57593 1.65122 2.57547 2.68501 2.84688 3.39832 3.44229 3.61402 3.69455 3.76987 3.84548 3.87060 3.93028 4.04633 4.10824 4.17522 4.21784 4.25660 4.33182 4.35307 4.39224 4.43281 4.49665 4.52340 4.59327 4.61370 4.65650 4.76102 4.80109 4.83319 4.86901 4.92941 4.93614 4.97133 4.99113 5.06501 5.09622 5.22198 5.23883 5.31486 5.39959 5.50711 5.54348 5.59107 5.79656 5.90456 5.98205 6.28910 6.29096 7.01604 7.34391 8.12821 8.34079 9.29798 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013303 B = 0.002437 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.255704 B =11486.420631 C =12870.001003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.050 3.950 3 N -0.532 5.532 4 C 0.012 3.988 5 C 0.058 3.942 6 O -0.389 6.389 7 C 0.082 3.918 8 H 0.110 0.890 9 C 0.519 3.481 10 O -0.571 6.571 11 N -0.601 5.601 12 C 0.114 3.886 13 C -0.121 4.121 14 C -0.073 4.073 15 C -0.108 4.108 16 C 0.151 3.849 17 N -0.751 5.751 18 C -0.245 4.245 19 H 0.078 0.922 20 C -0.079 4.079 21 N -0.973 5.973 22 Si 0.974 3.026 23 H -0.276 1.276 24 H -0.297 1.297 25 H -0.277 1.277 26 C -0.129 4.129 27 C 0.101 3.899 28 C 0.031 3.969 29 H 0.043 0.957 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.112 0.888 35 H 0.037 0.963 36 H 0.074 0.926 37 H 0.118 0.882 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.055 0.945 42 H 0.084 0.916 43 H 0.055 0.945 44 H 0.051 0.949 45 H 0.029 0.971 46 H 0.019 0.981 47 H 0.371 0.629 48 H 0.251 0.749 49 H 0.060 0.940 50 H 0.087 0.913 51 H 0.094 0.906 52 H 0.103 0.897 53 H 0.034 0.966 54 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.610 10.688 24.951 27.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.078 4.078 3 N -0.256 5.256 4 C -0.116 4.116 5 C -0.019 4.019 6 O -0.308 6.308 7 C 0.021 3.979 8 H 0.128 0.872 9 C 0.306 3.694 10 O -0.449 6.449 11 N -0.335 5.335 12 C -0.007 4.007 13 C -0.159 4.159 14 C -0.092 4.092 15 C -0.146 4.146 16 C 0.025 3.975 17 N -0.394 5.394 18 C -0.377 4.377 19 H 0.095 0.905 20 C -0.271 4.271 21 N -0.624 5.624 22 Si 0.803 3.197 23 H -0.202 1.202 24 H -0.223 1.223 25 H -0.203 1.203 26 C -0.167 4.167 27 C -0.020 4.020 28 C -0.098 4.098 29 H 0.062 0.938 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.114 0.886 34 H 0.130 0.870 35 H 0.056 0.944 36 H 0.093 0.907 37 H 0.136 0.864 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.103 0.897 41 H 0.074 0.926 42 H 0.102 0.898 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.047 0.953 46 H 0.037 0.963 47 H 0.203 0.797 48 H 0.059 0.941 49 H 0.079 0.921 50 H 0.105 0.895 51 H 0.112 0.888 52 H 0.121 0.879 53 H 0.052 0.948 54 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.792 11.252 25.032 27.860 hybrid contribution -1.128 -1.025 -0.846 1.743 sum 3.664 10.227 24.186 26.514 Atomic orbital electron populations 1.22414 0.98323 1.02981 1.01371 1.22266 0.92793 0.88376 1.04325 1.62530 1.58435 1.02844 1.01767 1.22923 0.99347 0.95957 0.93410 1.22999 0.99430 0.91460 0.87963 1.88079 1.79005 1.49874 1.13798 1.21946 1.00698 0.90981 0.84256 0.87212 1.20504 0.81181 0.83445 0.84254 1.90679 1.36858 1.32859 1.84553 1.48146 1.39612 1.41072 1.04623 1.21654 0.98146 0.94759 0.86184 1.21901 0.97836 0.96907 0.99255 1.21005 0.97957 0.95376 0.94900 1.21625 0.97537 0.96985 0.98484 1.20897 0.95428 0.89836 0.91295 1.42673 1.07767 1.37394 1.51533 1.19638 0.91662 1.08032 1.18322 0.90453 1.25607 0.97584 1.02196 1.01735 1.69821 1.13601 1.39081 1.39858 0.85198 0.77784 0.78677 0.78052 1.20164 1.22312 1.20303 1.22020 1.01625 0.97756 0.95291 1.22133 0.89864 0.89067 1.00951 1.22684 0.97802 0.92719 0.96612 0.93822 0.90929 0.92625 0.89881 0.88601 0.87005 0.94444 0.90749 0.86384 0.89480 0.90617 0.89666 0.92640 0.89762 0.92631 0.93009 0.95298 0.96346 0.79735 0.94055 0.92094 0.89468 0.88818 0.87914 0.94773 0.87761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.71 9.20 71.98 0.66 -2.04 16 2 C 0.05 0.62 6.10 86.30 0.53 1.15 16 3 N -0.53 -7.65 4.94 -895.20 -4.42 -12.07 16 4 C 0.01 0.15 5.33 86.31 0.46 0.61 16 5 C 0.06 0.80 7.01 72.01 0.50 1.31 16 6 O -0.39 -8.90 10.02 -130.18 -1.30 -10.20 16 7 C 0.08 1.62 2.35 29.88 0.07 1.69 16 8 H 0.11 1.69 7.13 -2.39 -0.02 1.67 16 9 C 0.52 12.82 7.03 87.66 0.62 13.44 16 10 O -0.57 -19.28 15.97 15.78 0.25 -19.03 16 11 N -0.60 -11.82 2.97 -818.90 -2.43 -14.25 16 12 C 0.11 2.24 6.42 86.37 0.55 2.80 16 13 C -0.12 -2.39 5.36 30.67 0.16 -2.22 16 14 C -0.07 -1.54 2.15 -10.77 -0.02 -1.56 16 15 C -0.11 -3.19 4.80 30.59 0.15 -3.04 16 16 C 0.15 5.66 6.02 86.38 0.52 6.18 16 17 N -0.75 -37.97 5.60 -343.46 -1.92 -39.90 16 18 C -0.24 -13.58 9.99 84.03 0.84 -12.74 16 19 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 20 C -0.08 -4.55 5.50 84.86 0.47 -4.09 16 21 N -0.97 -59.81 13.06 21.65 0.28 -59.52 16 22 Si 0.97 45.70 29.55 68.60 2.03 47.73 16 23 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 24 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 25 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 26 C -0.13 -2.35 5.03 30.67 0.15 -2.19 16 27 C 0.10 1.47 5.59 86.36 0.48 1.96 16 28 C 0.03 0.53 4.07 86.31 0.35 0.89 16 29 H 0.04 0.75 6.42 -2.39 -0.02 0.74 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.05 0.78 6.61 -2.39 -0.02 0.77 16 32 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.10 0.91 8.11 -2.38 -0.02 0.89 16 34 H 0.11 0.91 8.12 -2.39 -0.02 0.90 16 35 H 0.04 0.57 6.59 -2.39 -0.02 0.56 16 36 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.12 1.23 8.14 -2.38 -0.02 1.21 16 38 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 39 H 0.08 1.75 7.04 -2.39 -0.02 1.74 16 40 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.08 1.64 8.14 -2.39 -0.02 1.63 16 43 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.03 1.04 6.54 -2.39 -0.02 1.03 16 46 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.37 20.15 7.67 -92.71 -0.71 19.44 16 48 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 49 H 0.06 1.20 7.74 -2.39 -0.02 1.18 16 50 H 0.09 1.63 6.50 -2.39 -0.02 1.62 16 51 H 0.09 1.10 8.14 -2.39 -0.02 1.09 16 52 H 0.10 1.20 4.59 -2.39 -0.01 1.19 16 53 H 0.03 0.74 6.41 -2.38 -0.02 0.73 16 54 H 0.10 1.65 5.72 -2.39 -0.01 1.63 16 Total: -1.00 -73.91 404.40 -0.85 -74.76 By element: Atomic # 1 Polarization: 30.19 SS G_CDS: 0.17 Total: 30.36 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: 6.50 Total: 2.12 kcal Atomic # 7 Polarization: -117.24 SS G_CDS: -8.49 Total: -125.74 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: -1.05 Total: -29.23 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -73.91 -0.85 -74.76 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753577397.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.032 kcal (2) G-P(sol) polarization free energy of solvation -73.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds