Wall clock time and date at job start Sat Apr 11 2020 05:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46901 * 109.46994 * 2 1 4 4 C 1.47016 * 111.00128 * 64.97911 * 3 2 1 5 5 C 1.53099 * 109.29320 * 177.63147 * 4 3 2 6 6 O 1.43013 * 109.25964 * 56.83122 * 5 4 3 7 7 C 1.43013 * 113.73573 * 301.32507 * 6 5 4 8 8 C 1.47022 * 111.03543 * 301.32604 * 3 2 1 9 9 H 1.08994 * 109.50540 * 62.38901 * 8 3 2 10 10 C 1.50704 * 109.50371 * 302.30082 * 8 3 2 11 11 O 1.21278 * 120.00441 * 332.16335 * 10 8 3 12 12 N 1.34779 * 119.99725 * 152.15479 * 10 8 3 13 13 C 1.46500 * 120.00082 * 180.02562 * 12 10 8 14 14 C 1.52997 * 109.47143 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.46016 * 60.02603 * 14 13 12 16 16 C 1.53034 * 109.45999 * 300.06765 * 14 13 12 17 17 C 1.53193 * 109.31303 * 178.61622 * 16 14 13 18 18 N 1.46925 * 108.77557 * 54.63432 * 17 16 14 19 19 C 1.36939 * 120.63032 * 126.41329 * 18 17 16 20 20 H 1.08002 * 120.00112 * 330.22036 * 19 18 17 21 21 C 1.38814 * 120.00075 * 150.21848 * 19 18 17 22 22 N 1.31619 * 120.00238 * 160.81488 * 21 19 18 23 23 Si 1.86797 * 119.99673 * 340.82025 * 21 19 18 24 24 H 1.48505 * 109.47438 * 90.04378 * 23 21 19 25 25 H 1.48506 * 109.46975 * 210.03786 * 23 21 19 26 26 H 1.48494 * 109.47423 * 330.03862 * 23 21 19 27 27 C 1.46919 * 118.73787 * 306.39184 * 18 17 16 28 28 C 1.53040 * 109.46075 * 180.02562 * 14 13 12 29 29 H 1.09005 * 109.46834 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47213 * 299.99799 * 1 2 3 31 31 H 1.08998 * 109.47284 * 60.00127 * 1 2 3 32 32 H 1.08996 * 109.47213 * 240.00201 * 2 1 3 33 33 H 1.08998 * 109.47284 * 119.99873 * 2 1 3 34 34 H 1.09001 * 109.50593 * 57.67897 * 4 3 2 35 35 H 1.09003 * 109.50713 * 297.59129 * 4 3 2 36 36 H 1.09005 * 109.50458 * 176.76277 * 5 4 3 37 37 H 1.09003 * 109.50771 * 296.84643 * 5 4 3 38 38 H 1.08998 * 109.50790 * 178.60584 * 7 6 5 39 39 H 1.08998 * 109.50747 * 298.73998 * 7 6 5 40 40 H 0.96997 * 119.99804 * 0.02562 * 12 10 8 41 41 H 1.09004 * 109.46838 * 300.00266 * 13 12 10 42 42 H 1.09000 * 109.46775 * 60.00114 * 13 12 10 43 43 H 1.09004 * 109.47131 * 60.00465 * 15 14 13 44 44 H 1.09003 * 109.47117 * 179.97438 * 15 14 13 45 45 H 1.09000 * 109.47379 * 299.99869 * 15 14 13 46 46 H 1.09004 * 109.49787 * 298.56769 * 16 14 13 47 47 H 1.09000 * 109.49871 * 58.66158 * 16 14 13 48 48 H 1.08996 * 109.58603 * 294.84764 * 17 16 14 49 49 H 1.09002 * 109.58729 * 174.42147 * 17 16 14 50 50 H 0.96997 * 120.00112 * 179.97438 * 22 21 19 51 51 H 1.09004 * 109.58771 * 293.81668 * 27 18 17 52 52 H 1.09004 * 109.70562 * 173.46596 * 27 18 17 53 53 H 1.09007 * 109.49367 * 301.33590 * 28 14 13 54 54 H 1.08998 * 109.49710 * 61.39829 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6479 2.0753 1.2437 5 6 2.2266 3.4926 1.2280 6 8 1.7571 4.1810 0.0657 7 6 2.1029 3.5372 -1.1636 8 6 1.5228 2.1204 -1.1722 9 1 0.4348 2.1722 -1.1350 10 6 1.9502 1.4094 -2.4304 11 8 2.9612 0.7396 -2.4350 12 7 1.2085 1.5176 -3.5506 13 6 1.6236 0.8261 -4.7736 14 6 0.6160 1.1128 -5.8886 15 6 0.5593 2.6193 -6.1493 16 6 -0.7683 0.6166 -5.4648 17 6 -1.7810 0.9363 -6.5689 18 7 -1.2970 0.3669 -7.8339 19 6 -2.0936 -0.4649 -8.5746 20 1 -2.8290 -1.0860 -8.0847 21 6 -1.9561 -0.5100 -9.9552 22 7 -2.4219 -1.5397 -10.6297 23 14 -1.1098 0.8908 -10.8556 24 1 0.3454 0.6104 -10.9512 25 1 -1.6801 1.0179 -12.2208 26 1 -1.3218 2.1578 -10.1107 27 6 0.0577 0.7074 -8.2893 28 6 1.0494 0.3897 -7.1658 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.0482 1.5281 2.0972 35 1 0.5618 2.1264 1.3210 36 1 1.9052 4.0268 2.1221 37 1 3.3152 3.4410 1.2064 38 1 1.6920 4.1037 -1.9993 39 1 3.1878 3.4869 -1.2555 40 1 0.4000 2.0535 -3.5470 41 1 2.6092 1.1809 -5.0749 42 1 1.6649 -0.2472 -4.5878 43 1 1.5452 2.9733 -6.4507 44 1 -0.1583 2.8238 -6.9440 45 1 0.2507 3.1342 -5.2395 46 1 -0.7347 -0.4608 -5.3029 47 1 -1.0666 1.1145 -4.5422 48 1 -1.8826 2.0168 -6.6697 49 1 -2.7468 0.4983 -6.3169 50 1 -2.3261 -1.5710 -11.5944 51 1 0.1060 1.7694 -8.5305 52 1 0.3067 0.1203 -9.1733 53 1 2.0453 0.7262 -7.4542 54 1 1.0661 -0.6854 -6.9874 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754717675.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:41 Heat of formation + Delta-G solvation = -72.448403 kcal Electronic energy + Delta-G solvation = -31839.040035 eV Core-core repulsion = 27810.654840 eV Total energy + Delta-G solvation = -4028.385195 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.77580 -40.61173 -39.45662 -37.28977 -36.64771 -34.69481 -33.31059 -32.41712 -31.91579 -31.74609 -28.95430 -28.21916 -27.49538 -26.03730 -25.24446 -24.28773 -23.70887 -22.73668 -22.01273 -20.71044 -19.71939 -18.62950 -18.12806 -17.70975 -17.60163 -17.28045 -16.77067 -16.30952 -15.98665 -15.94917 -15.86056 -15.64846 -15.42852 -15.21250 -14.90167 -14.86307 -14.75597 -14.50538 -14.14353 -13.93327 -13.86672 -13.58922 -13.36889 -13.11083 -12.87557 -12.84955 -12.76176 -12.66872 -12.42000 -12.27589 -12.18175 -12.11109 -11.73897 -11.65863 -11.62603 -11.57394 -11.21944 -11.12477 -11.03477 -10.68073 -10.57316 -10.08996 -9.37601 -8.84659 -8.16418 -5.49605 1.30564 1.40874 1.50352 1.51261 1.99887 2.42291 2.67145 2.94577 3.07717 3.37963 3.66984 3.71082 3.74717 3.79678 3.85615 3.86323 3.93787 4.08967 4.20697 4.28967 4.30449 4.32493 4.37863 4.44536 4.50832 4.56471 4.59797 4.65631 4.72054 4.75174 4.76588 4.78409 4.83501 4.90529 4.93365 4.94093 4.97664 5.04081 5.05551 5.19403 5.21207 5.25861 5.29677 5.37056 5.44162 5.62124 5.77269 5.89938 5.92749 6.04659 6.14225 6.52496 6.95276 7.20883 7.64827 8.05863 9.03919 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.023650 B = 0.002541 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.627751 B =11015.127288 C =11380.168857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.046 3.954 3 N -0.530 5.530 4 C 0.017 3.983 5 C 0.056 3.944 6 O -0.389 6.389 7 C 0.078 3.922 8 C 0.035 3.965 9 H 0.086 0.914 10 C 0.521 3.479 11 O -0.561 6.561 12 N -0.711 5.711 13 C 0.143 3.857 14 C -0.055 4.055 15 C -0.142 4.142 16 C -0.112 4.112 17 C 0.142 3.858 18 N -0.619 5.619 19 C -0.247 4.247 20 H 0.047 0.953 21 C -0.037 4.037 22 N -0.961 5.961 23 Si 0.950 3.050 24 H -0.274 1.274 25 H -0.314 1.314 26 H -0.258 1.258 27 C 0.122 3.878 28 C -0.116 4.116 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.054 0.946 36 H 0.124 0.876 37 H 0.058 0.942 38 H 0.121 0.879 39 H 0.054 0.946 40 H 0.412 0.588 41 H 0.067 0.933 42 H 0.051 0.949 43 H 0.063 0.937 44 H 0.052 0.948 45 H 0.076 0.924 46 H 0.044 0.956 47 H 0.087 0.913 48 H 0.044 0.956 49 H 0.048 0.952 50 H 0.261 0.739 51 H 0.040 0.960 52 H 0.043 0.957 53 H 0.079 0.921 54 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.051 12.880 25.809 30.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.081 4.081 3 N -0.255 5.255 4 C -0.110 4.110 5 C -0.021 4.021 6 O -0.307 6.307 7 C 0.001 3.999 8 C -0.078 4.078 9 H 0.104 0.896 10 C 0.306 3.694 11 O -0.438 6.438 12 N -0.364 5.364 13 C 0.019 3.981 14 C -0.055 4.055 15 C -0.199 4.199 16 C -0.151 4.151 17 C 0.018 3.982 18 N -0.344 5.344 19 C -0.377 4.377 20 H 0.064 0.936 21 C -0.232 4.232 22 N -0.607 5.607 23 Si 0.778 3.222 24 H -0.200 1.200 25 H -0.243 1.243 26 H -0.182 1.182 27 C -0.002 4.002 28 C -0.156 4.156 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.107 0.893 34 H 0.123 0.877 35 H 0.072 0.928 36 H 0.142 0.858 37 H 0.076 0.924 38 H 0.139 0.861 39 H 0.073 0.927 40 H 0.250 0.750 41 H 0.086 0.914 42 H 0.069 0.931 43 H 0.082 0.918 44 H 0.071 0.929 45 H 0.095 0.905 46 H 0.063 0.937 47 H 0.105 0.895 48 H 0.062 0.938 49 H 0.067 0.933 50 H 0.069 0.931 51 H 0.058 0.942 52 H 0.061 0.939 53 H 0.098 0.902 54 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 10.154 12.507 25.665 30.303 hybrid contribution -1.025 -0.376 -1.208 1.628 sum 9.130 12.131 24.457 28.786 Atomic orbital electron populations 1.22389 0.96860 1.03172 1.02187 1.22216 0.93686 0.89040 1.03185 1.62205 1.59566 1.02389 1.01339 1.22945 0.99998 0.95834 0.92269 1.22921 0.98986 0.91389 0.88754 1.88010 1.78629 1.49650 1.14383 1.22569 0.99776 0.89358 0.88241 1.22311 1.00214 0.95611 0.89628 0.89603 1.20496 0.83232 0.80873 0.84770 1.90702 1.26646 1.41566 1.84925 1.46002 1.28496 1.51695 1.10234 1.21236 0.97471 0.96253 0.83093 1.20566 0.94516 0.96989 0.93464 1.21946 1.02433 0.93100 1.02441 1.21937 0.94456 1.00418 0.98295 1.21152 0.95896 0.96484 0.84677 1.44445 1.11191 1.55222 1.23539 1.18843 1.15723 1.14367 0.88746 0.93554 1.25993 1.00336 0.99562 0.97260 1.69966 1.52470 1.30639 1.07634 0.85869 0.77842 0.81826 0.76624 1.20029 1.24296 1.18177 1.21397 0.84791 0.97740 0.96319 1.21906 0.98702 0.99934 0.95051 0.91449 0.91127 0.93040 0.92240 0.89304 0.87729 0.92767 0.85788 0.92389 0.86090 0.92720 0.75029 0.91440 0.93083 0.91783 0.92926 0.90526 0.93685 0.89488 0.93772 0.93301 0.93055 0.94234 0.93872 0.90229 0.93170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.68 9.21 71.98 0.66 -2.02 16 2 C 0.05 0.82 5.65 86.30 0.49 1.31 16 3 N -0.53 -9.30 4.48 -874.37 -3.92 -13.21 16 4 C 0.02 0.20 5.31 86.31 0.46 0.66 16 5 C 0.06 0.66 7.01 72.02 0.50 1.16 16 6 O -0.39 -6.19 10.83 -148.98 -1.61 -7.80 16 7 C 0.08 1.21 6.27 72.02 0.45 1.66 16 8 C 0.03 0.58 1.87 44.18 0.08 0.66 16 9 H 0.09 1.22 6.42 -2.39 -0.02 1.21 16 10 C 0.52 11.31 6.02 87.66 0.53 11.84 16 11 O -0.56 -17.09 15.37 -3.02 -0.05 -17.14 16 12 N -0.71 -13.06 4.95 -463.06 -2.29 -15.35 16 13 C 0.14 3.26 4.56 86.38 0.39 3.66 16 14 C -0.05 -1.35 0.53 -52.16 -0.03 -1.38 16 15 C -0.14 -2.96 7.54 71.98 0.54 -2.42 16 16 C -0.11 -3.02 4.75 30.67 0.15 -2.87 16 17 C 0.14 4.99 6.05 86.36 0.52 5.52 16 18 N -0.62 -27.91 2.74 -699.11 -1.91 -29.82 16 19 C -0.25 -13.91 10.02 84.03 0.84 -13.06 16 20 H 0.05 2.88 8.06 -2.91 -0.02 2.86 16 21 C -0.04 -2.16 5.24 84.86 0.44 -1.72 16 22 N -0.96 -60.81 13.97 21.65 0.30 -60.51 16 23 Si 0.95 46.26 24.35 68.60 1.67 47.93 16 24 H -0.27 -12.59 6.54 99.48 0.65 -11.94 16 25 H -0.31 -15.68 7.11 99.48 0.71 -14.97 16 26 H -0.26 -11.78 6.79 99.48 0.68 -11.11 16 27 C 0.12 4.91 3.73 86.36 0.32 5.23 16 28 C -0.12 -3.66 4.90 30.67 0.15 -3.51 16 29 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.07 0.83 6.57 -2.39 -0.02 0.81 16 31 H 0.05 0.78 6.44 -2.39 -0.02 0.76 16 32 H 0.06 1.42 6.25 -2.39 -0.01 1.40 16 33 H 0.09 1.35 8.12 -2.39 -0.02 1.33 16 34 H 0.10 0.95 8.13 -2.39 -0.02 0.93 16 35 H 0.05 0.60 6.56 -2.39 -0.02 0.58 16 36 H 0.12 0.84 8.14 -2.38 -0.02 0.82 16 37 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 38 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.41 5.55 6.16 -92.71 -0.57 4.98 16 41 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 42 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 44 H 0.05 1.33 4.98 -2.39 -0.01 1.32 16 45 H 0.08 1.16 6.86 -2.39 -0.02 1.14 16 46 H 0.04 1.40 8.14 -2.39 -0.02 1.39 16 47 H 0.09 1.71 6.82 -2.39 -0.02 1.70 16 48 H 0.04 1.41 6.69 -2.39 -0.02 1.40 16 49 H 0.05 1.81 7.93 -2.39 -0.02 1.79 16 50 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 51 H 0.04 1.51 5.66 -2.38 -0.01 1.49 16 52 H 0.04 1.98 4.65 -2.38 -0.01 1.97 16 53 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 54 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -73.40 389.97 -1.06 -74.46 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: 0.23 Total: 16.73 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: 6.51 Total: 4.72 kcal Atomic # 7 Polarization: -111.08 SS G_CDS: -7.82 Total: -118.90 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -1.66 Total: -24.94 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 1.67 Total: 47.93 kcal Total: -73.40 -1.06 -74.46 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754717675.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.011 kcal (2) G-P(sol) polarization free energy of solvation -73.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds