Wall clock time and date at job start Sat Apr 11 2020 05:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46898 * 109.47557 * 2 1 4 4 C 1.47014 * 110.99957 * 46.36270 * 3 2 1 5 5 C 1.53094 * 109.25702 * 182.39388 * 4 3 2 6 6 O 1.43014 * 109.26181 * 303.15365 * 5 4 3 7 7 C 1.43022 * 113.77412 * 58.64297 * 6 5 4 8 8 C 1.47015 * 111.00178 * 170.00271 * 3 2 1 9 9 H 1.08992 * 109.50284 * 297.58648 * 8 3 2 10 10 C 1.50698 * 109.50658 * 57.67428 * 8 3 2 11 11 O 1.21290 * 119.99933 * 359.91050 * 10 8 3 12 12 N 1.34778 * 120.00058 * 179.91325 * 10 8 3 13 13 C 1.46500 * 119.99937 * 180.02562 * 12 10 8 14 14 C 1.52999 * 109.46698 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.45993 * 299.96786 * 14 13 12 16 16 C 1.53045 * 109.45811 * 179.97438 * 14 13 12 17 17 C 1.53192 * 109.33739 * 178.61166 * 16 14 13 18 18 N 1.46998 * 108.74154 * 54.62332 * 17 16 14 19 19 C 1.36930 * 120.61644 * 126.38326 * 18 17 16 20 20 H 1.07998 * 120.00280 * 207.68527 * 19 18 17 21 21 C 1.38815 * 119.99720 * 27.69315 * 19 18 17 22 22 N 1.31614 * 120.00332 * 17.34405 * 21 19 18 23 23 Si 1.86808 * 119.99812 * 197.34769 * 21 19 18 24 24 H 1.48504 * 109.46698 * 59.99692 * 23 21 19 25 25 H 1.48500 * 109.47100 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.46909 * 299.99973 * 23 21 19 27 27 C 1.46925 * 118.75135 * 306.40734 * 18 17 16 28 28 C 1.53043 * 109.45287 * 59.93869 * 14 13 12 29 29 H 1.08999 * 109.47288 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46748 * 299.99491 * 1 2 3 31 31 H 1.08998 * 109.47178 * 59.99974 * 1 2 3 32 32 H 1.09008 * 109.47045 * 239.99651 * 2 1 3 33 33 H 1.09002 * 109.47372 * 120.00758 * 2 1 3 34 34 H 1.08999 * 109.50865 * 302.33882 * 4 3 2 35 35 H 1.09006 * 109.50092 * 62.45827 * 4 3 2 36 36 H 1.08993 * 109.50387 * 63.09463 * 5 4 3 37 37 H 1.09003 * 109.50532 * 183.22047 * 5 4 3 38 38 H 1.09004 * 109.54656 * 181.43860 * 7 6 5 39 39 H 1.09006 * 109.46550 * 61.31215 * 7 6 5 40 40 H 0.96997 * 119.99670 * 0.02562 * 12 10 8 41 41 H 1.08997 * 109.47030 * 59.99960 * 13 12 10 42 42 H 1.08997 * 109.46975 * 299.99515 * 13 12 10 43 43 H 1.08999 * 109.47175 * 300.02862 * 15 14 13 44 44 H 1.08999 * 109.47101 * 60.03523 * 15 14 13 45 45 H 1.09007 * 109.47257 * 180.02562 * 15 14 13 46 46 H 1.09003 * 109.49403 * 298.57932 * 16 14 13 47 47 H 1.09000 * 109.49888 * 58.64121 * 16 14 13 48 48 H 1.09004 * 109.58473 * 174.44160 * 17 16 14 49 49 H 1.08995 * 109.58791 * 294.86074 * 17 16 14 50 50 H 0.97007 * 120.00009 * 179.97438 * 22 21 19 51 51 H 1.09004 * 109.58839 * 293.82233 * 27 18 17 52 52 H 1.09002 * 109.58770 * 173.39618 * 27 18 17 53 53 H 1.09007 * 109.49362 * 301.32879 * 28 14 13 54 54 H 1.08996 * 109.49819 * 61.39159 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.3024 2.1974 0.9933 5 6 1.8010 3.6429 0.9183 6 8 3.2165 3.6649 1.1212 7 6 3.9473 2.8840 0.1715 8 6 3.4697 1.4310 0.2383 9 1 3.6898 1.0204 1.2236 10 6 4.1788 0.6194 -0.8150 11 8 3.5400 0.0561 -1.6786 12 7 5.5228 0.5194 -0.7974 13 6 6.2121 -0.2691 -1.8217 14 6 7.7211 -0.2184 -1.5745 15 6 8.2000 1.2332 -1.6410 16 6 8.4410 -1.0427 -2.6443 17 6 9.9535 -0.9617 -2.4146 18 7 10.2446 -1.3766 -1.0348 19 6 11.1567 -2.3661 -0.7819 20 1 11.0643 -2.9710 0.1080 21 6 12.2001 -2.5916 -1.6692 22 7 12.5231 -1.6712 -2.5528 23 14 13.1457 -4.2015 -1.6093 24 1 12.2145 -5.3319 -1.8556 25 1 14.2019 -4.1944 -2.6532 26 1 13.7718 -4.3583 -0.2720 27 6 9.5382 -0.7100 0.0676 28 6 8.0306 -0.7945 -0.1908 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 0.2333 2.1696 0.7827 35 1 1.4879 1.7997 1.9911 36 1 1.5673 4.0581 -0.0620 37 1 1.3133 4.2368 1.6914 38 1 5.0112 2.9286 0.4044 39 1 3.7766 3.2777 -0.8305 40 1 6.0335 0.9696 -0.1065 41 1 5.9916 0.1424 -2.8066 42 1 5.8705 -1.3032 -1.7751 43 1 7.9786 1.6441 -2.6260 44 1 7.6874 1.8202 -0.8788 45 1 9.2752 1.2696 -1.4653 46 1 8.1185 -2.0820 -2.5808 47 1 8.2011 -0.6470 -3.6311 48 1 10.4650 -1.6250 -3.1122 49 1 10.2918 0.0632 -2.5670 50 1 13.2525 -1.8286 -3.1727 51 1 9.8427 0.3355 0.1176 52 1 9.7762 -1.2074 1.0079 53 1 7.4989 -0.2216 0.5690 54 1 7.7116 -1.8360 -0.1507 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754717676.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:44 Heat of formation + Delta-G solvation = -70.041711 kcal Electronic energy + Delta-G solvation = -31487.505792 eV Core-core repulsion = 27459.224959 eV Total energy + Delta-G solvation = -4028.280833 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.71788 -40.46481 -39.40200 -37.23456 -36.47607 -34.72135 -33.20393 -32.45804 -31.62473 -31.44357 -28.79181 -28.21437 -27.45586 -26.14289 -25.26793 -23.91365 -23.25172 -22.53855 -21.82004 -21.05297 -19.63003 -18.76374 -18.09054 -17.61770 -17.32898 -16.92594 -16.64571 -16.37447 -16.14434 -15.89621 -15.80179 -15.50117 -15.46747 -15.12574 -15.03633 -14.96503 -14.53510 -14.22155 -14.17923 -13.80327 -13.51223 -13.22689 -12.99339 -12.98340 -12.80944 -12.68197 -12.65288 -12.54238 -12.36961 -12.35429 -12.18531 -12.04841 -11.90466 -11.79863 -11.53946 -11.49328 -11.14071 -11.02660 -10.96074 -10.50733 -10.44526 -10.08481 -9.38533 -8.62437 -7.85711 -5.29053 1.45879 1.48457 1.52869 1.54687 1.99744 2.51929 2.65001 2.92872 3.28270 3.63949 3.70755 3.72790 3.82452 3.85655 3.93120 3.95984 3.97625 4.12230 4.21121 4.32642 4.41243 4.41618 4.54222 4.54812 4.58871 4.61308 4.65811 4.74253 4.77583 4.81660 4.83557 4.85079 4.92769 4.96946 4.99366 5.07430 5.13585 5.17417 5.23540 5.25311 5.34138 5.41826 5.48501 5.52061 5.57635 5.67839 5.79969 5.85898 5.97387 6.06018 6.41409 6.52010 7.17960 7.20685 7.91210 8.41281 9.19921 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.023925 B = 0.002306 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.049549 B =12140.336914 C =12553.489299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.037 3.963 3 N -0.529 5.529 4 C 0.013 3.987 5 C 0.057 3.943 6 O -0.390 6.390 7 C 0.078 3.922 8 C 0.035 3.965 9 H 0.084 0.916 10 C 0.519 3.481 11 O -0.558 6.558 12 N -0.709 5.709 13 C 0.145 3.855 14 C -0.053 4.053 15 C -0.137 4.137 16 C -0.119 4.119 17 C 0.180 3.820 18 N -0.610 5.610 19 C -0.261 4.261 20 H 0.063 0.937 21 C -0.050 4.050 22 N -0.933 5.933 23 Si 0.962 3.038 24 H -0.281 1.281 25 H -0.295 1.295 26 H -0.276 1.276 27 C 0.141 3.859 28 C -0.110 4.110 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.025 0.975 34 H 0.110 0.890 35 H 0.045 0.955 36 H 0.060 0.940 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.060 0.940 40 H 0.411 0.589 41 H 0.064 0.936 42 H 0.053 0.947 43 H 0.056 0.944 44 H 0.074 0.926 45 H 0.046 0.954 46 H 0.045 0.955 47 H 0.066 0.934 48 H 0.046 0.954 49 H 0.007 0.993 50 H 0.249 0.751 51 H 0.025 0.975 52 H 0.047 0.953 53 H 0.083 0.917 54 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.744 10.693 7.895 27.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.090 4.090 3 N -0.256 5.256 4 C -0.114 4.114 5 C -0.020 4.020 6 O -0.308 6.308 7 C 0.000 4.000 8 C -0.078 4.078 9 H 0.101 0.899 10 C 0.305 3.695 11 O -0.437 6.437 12 N -0.363 5.363 13 C 0.021 3.979 14 C -0.054 4.054 15 C -0.194 4.194 16 C -0.159 4.159 17 C 0.055 3.945 18 N -0.333 5.333 19 C -0.392 4.392 20 H 0.080 0.920 21 C -0.245 4.245 22 N -0.579 5.579 23 Si 0.790 3.210 24 H -0.208 1.208 25 H -0.221 1.221 26 H -0.201 1.201 27 C 0.016 3.984 28 C -0.149 4.149 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.043 0.957 34 H 0.128 0.872 35 H 0.063 0.937 36 H 0.079 0.921 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.078 0.922 40 H 0.249 0.751 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.093 0.907 45 H 0.065 0.935 46 H 0.064 0.936 47 H 0.084 0.916 48 H 0.065 0.935 49 H 0.025 0.975 50 H 0.058 0.942 51 H 0.043 0.957 52 H 0.065 0.935 53 H 0.102 0.898 54 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -24.065 10.590 6.869 27.175 hybrid contribution 1.346 -1.503 0.475 2.073 sum -22.719 9.087 7.344 25.548 Atomic orbital electron populations 1.21863 0.93344 1.02585 1.02553 1.22412 0.97032 0.88264 1.01277 1.62081 1.01312 1.12605 1.49582 1.23031 1.00726 0.94129 0.93498 1.22931 0.80455 0.95407 1.03203 1.88009 1.19377 1.69506 1.53948 1.22639 0.97341 0.86240 0.93751 1.22309 0.90324 0.98168 0.96967 0.89872 1.20520 0.82333 0.80825 0.85800 1.90624 1.66034 1.48016 1.38976 1.45974 1.06034 1.52347 1.31934 1.21240 0.90589 0.94989 0.91098 1.20549 0.92360 0.96539 0.95913 1.21874 1.01262 0.94077 1.02152 1.22010 0.97081 0.98892 0.97879 1.20573 0.91243 0.96535 0.86188 1.44296 1.45786 1.41745 1.01514 1.19449 1.03257 1.08358 1.08115 0.91952 1.25715 0.97880 1.00701 1.00251 1.70162 1.30583 1.33416 1.23728 0.85429 0.77892 0.80454 0.77208 1.20781 1.22075 1.20141 1.21086 0.91497 0.95242 0.90605 1.21931 0.96720 1.00256 0.95969 0.91523 0.91191 0.92179 0.89893 0.95703 0.87159 0.93679 0.92140 0.85848 0.85964 0.92199 0.75066 0.91808 0.92852 0.92444 0.90734 0.93473 0.93597 0.91562 0.93510 0.97479 0.94199 0.95676 0.93470 0.89839 0.93419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.18 71.98 0.66 -1.47 16 2 C 0.04 0.75 5.33 86.30 0.46 1.21 16 3 N -0.53 -10.07 4.51 -874.41 -3.94 -14.01 16 4 C 0.01 0.18 4.94 86.31 0.43 0.61 16 5 C 0.06 0.71 7.01 72.01 0.50 1.21 16 6 O -0.39 -6.52 10.82 -148.98 -1.61 -8.14 16 7 C 0.08 1.23 6.17 72.01 0.44 1.67 16 8 C 0.03 0.64 2.36 44.18 0.10 0.74 16 9 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 10 C 0.52 12.03 6.88 87.66 0.60 12.64 16 11 O -0.56 -17.27 13.70 -3.06 -0.04 -17.31 16 12 N -0.71 -14.43 4.85 -463.06 -2.25 -16.68 16 13 C 0.14 3.65 4.56 86.38 0.39 4.05 16 14 C -0.05 -1.50 0.53 -52.15 -0.03 -1.52 16 15 C -0.14 -3.52 7.54 71.98 0.54 -2.98 16 16 C -0.12 -4.27 4.90 30.67 0.15 -4.12 16 17 C 0.18 8.40 4.84 86.35 0.42 8.82 16 18 N -0.61 -29.67 3.00 -698.91 -2.09 -31.77 16 19 C -0.26 -14.28 9.59 84.04 0.81 -13.48 16 20 H 0.06 3.34 7.89 -2.91 -0.02 3.32 16 21 C -0.05 -2.79 4.91 84.86 0.42 -2.37 16 22 N -0.93 -54.89 11.19 21.65 0.24 -54.65 16 23 Si 0.96 45.01 29.59 68.60 2.03 47.04 16 24 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 25 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 26 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 27 C 0.14 5.42 6.05 86.36 0.52 5.94 16 28 C -0.11 -3.24 4.75 30.67 0.15 -3.09 16 29 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 0.77 6.28 -2.39 -0.01 0.76 16 31 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.08 2.20 5.49 -2.38 -0.01 2.19 16 33 H 0.02 0.49 8.08 -2.39 -0.02 0.47 16 34 H 0.11 1.14 6.05 -2.39 -0.01 1.13 16 35 H 0.04 0.60 8.14 -2.38 -0.02 0.58 16 36 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.12 1.41 7.67 -2.38 -0.02 1.39 16 39 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 40 H 0.41 6.41 5.64 -92.71 -0.52 5.89 16 41 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.07 1.43 6.86 -2.39 -0.02 1.42 16 45 H 0.05 1.51 4.98 -2.38 -0.01 1.50 16 46 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 47 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 48 H 0.05 2.54 6.04 -2.38 -0.01 2.53 16 49 H 0.01 0.35 6.69 -2.39 -0.02 0.33 16 50 H 0.25 14.28 8.31 -92.70 -0.77 13.51 16 51 H 0.03 0.96 6.69 -2.38 -0.02 0.94 16 52 H 0.05 1.82 7.93 -2.39 -0.02 1.80 16 53 H 0.08 1.85 6.82 -2.38 -0.02 1.84 16 54 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -68.68 395.80 -0.73 -69.41 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: 0.36 Total: 18.27 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: 6.57 Total: 7.83 kcal Atomic # 7 Polarization: -109.07 SS G_CDS: -8.04 Total: -117.11 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -1.65 Total: -25.45 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -68.68 -0.73 -69.41 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754717676.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.634 kcal (2) G-P(sol) polarization free energy of solvation -68.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds