Wall clock time and date at job start Sat Apr 11 2020 05:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46898 * 109.46857 * 2 1 4 4 C 1.47008 * 111.00384 * 313.64033 * 3 2 1 5 5 C 1.53102 * 109.25785 * 177.61024 * 4 3 2 6 6 O 1.43010 * 109.26095 * 56.84365 * 5 4 3 7 7 C 1.43013 * 113.73881 * 301.33453 * 6 5 4 8 8 H 1.09001 * 109.53956 * 298.70905 * 7 6 5 9 9 C 1.50705 * 109.50912 * 178.60568 * 7 6 5 10 10 O 1.21282 * 119.99390 * 355.21427 * 9 7 6 11 11 N 1.34773 * 120.00324 * 175.21093 * 9 7 6 12 12 C 1.46499 * 119.99958 * 179.97438 * 11 9 7 13 13 C 1.53005 * 109.47061 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.44815 * 60.03211 * 13 12 11 15 15 C 1.53037 * 109.45865 * 180.02562 * 13 12 11 16 16 C 1.53194 * 109.33812 * 181.39984 * 15 13 12 17 17 N 1.46918 * 108.77474 * 305.34753 * 16 15 13 18 18 C 1.36938 * 120.63123 * 233.58478 * 17 16 15 19 19 H 1.08003 * 120.00368 * 152.62914 * 18 17 16 20 20 C 1.38810 * 119.99962 * 332.63443 * 18 17 16 21 21 N 1.31615 * 120.00392 * 159.34288 * 20 18 17 22 22 Si 1.86808 * 120.00049 * 339.33913 * 20 18 17 23 23 H 1.48497 * 109.46971 * 92.94029 * 22 20 18 24 24 H 1.48500 * 109.47031 * 212.94548 * 22 20 18 25 25 H 1.48504 * 109.46985 * 332.94376 * 22 20 18 26 26 C 1.46928 * 118.73977 * 53.60950 * 17 16 15 27 27 C 1.53106 * 109.50089 * 300.05315 * 13 12 11 28 28 C 1.47017 * 110.99856 * 189.99914 * 3 2 1 29 29 H 1.08998 * 109.46861 * 299.99550 * 1 2 3 30 30 H 1.08995 * 109.47053 * 59.99625 * 1 2 3 31 31 H 1.09006 * 109.47041 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46861 * 240.00450 * 2 1 3 33 33 H 1.08995 * 109.47053 * 120.00375 * 2 1 3 34 34 H 1.09009 * 109.50267 * 297.53695 * 4 3 2 35 35 H 1.08992 * 109.50596 * 57.66889 * 4 3 2 36 36 H 1.09000 * 109.50189 * 176.78021 * 5 4 3 37 37 H 1.08999 * 109.49971 * 296.86426 * 5 4 3 38 38 H 0.96996 * 120.00086 * 0.02562 * 11 9 7 39 39 H 1.08994 * 109.47190 * 60.00488 * 12 11 9 40 40 H 1.09001 * 109.47310 * 300.00139 * 12 11 9 41 41 H 1.09003 * 109.47049 * 179.97438 * 14 13 12 42 42 H 1.08999 * 109.47293 * 299.96886 * 14 13 12 43 43 H 1.09004 * 109.47265 * 59.97250 * 14 13 12 44 44 H 1.08997 * 109.50210 * 61.42895 * 15 13 12 45 45 H 1.09007 * 109.49694 * 301.36400 * 15 13 12 46 46 H 1.09007 * 109.58376 * 65.13286 * 16 15 13 47 47 H 1.08996 * 109.58715 * 185.41426 * 16 15 13 48 48 H 0.97003 * 120.00435 * 179.97438 * 21 20 18 49 49 H 1.08991 * 109.58687 * 66.17766 * 26 17 16 50 50 H 1.09000 * 109.58305 * 186.60833 * 26 17 16 51 51 H 1.09001 * 109.49324 * 58.67472 * 27 13 12 52 52 H 1.09005 * 109.51264 * 298.60211 * 27 13 12 53 53 H 1.08997 * 109.50423 * 62.45872 * 28 3 2 54 54 H 1.09002 * 109.54286 * 302.35192 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.3023 2.1975 -0.9932 5 6 1.8009 3.6431 -0.9182 6 8 3.2163 3.6650 -1.1211 7 6 3.9464 2.8844 -0.1709 8 1 3.7759 3.2773 0.8315 9 6 5.4174 2.9469 -0.4922 10 8 5.7961 3.5231 -1.4900 11 7 6.3121 2.3625 0.3290 12 6 7.7420 2.4228 0.0162 13 6 8.5326 1.6867 1.0999 14 6 8.0838 0.2250 1.1537 15 6 10.0263 1.7504 0.7732 16 6 10.8123 0.9830 1.8410 17 7 10.4611 1.5188 3.1631 18 6 11.4362 1.9458 4.0244 19 1 11.2143 2.7083 4.7564 20 6 12.7101 1.3986 3.9568 21 7 13.7341 2.0499 4.4661 22 14 12.9712 -0.2625 3.1428 23 1 13.3180 -0.0638 1.7127 24 1 14.0777 -0.9798 3.8256 25 1 11.7252 -1.0642 3.2432 26 6 9.0436 1.5875 3.5437 27 6 8.2779 2.3485 2.4568 28 6 3.4697 1.4312 -0.2383 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.4878 1.7999 -1.9911 35 1 0.2333 2.1697 -0.7825 36 1 1.3131 4.2368 -1.6912 37 1 1.5665 4.0584 0.0620 38 1 6.0092 1.9014 1.1268 39 1 8.0618 3.4640 -0.0232 40 1 7.9230 1.9503 -0.9492 41 1 8.6472 -0.2998 1.9253 42 1 7.0200 0.1799 1.3865 43 1 8.2647 -0.2464 0.1876 44 1 10.3518 2.7906 0.7593 45 1 10.2046 1.3003 -0.2035 46 1 10.5538 -0.0750 1.7950 47 1 11.8812 1.1058 1.6667 48 1 14.6243 1.6673 4.4192 49 1 8.6410 0.5789 3.6367 50 1 8.9456 2.1114 4.4945 51 1 7.2111 2.3240 2.6789 52 1 8.6197 3.3832 2.4272 53 1 3.6897 1.0213 -1.2240 54 1 3.9832 0.8439 0.5230 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754721850.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:49 Heat of formation + Delta-G solvation = -73.174177 kcal Electronic energy + Delta-G solvation = -31234.990408 eV Core-core repulsion = 27206.573741 eV Total energy + Delta-G solvation = -4028.416667 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.59207 -40.59414 -39.57852 -37.26238 -36.68290 -34.76460 -33.39235 -32.55991 -31.90510 -31.66677 -29.12297 -28.44161 -27.42472 -25.64466 -25.29771 -24.39684 -23.50957 -22.60474 -21.53390 -21.28649 -19.73897 -18.81564 -18.18674 -17.85600 -17.32720 -17.07311 -16.77718 -16.40535 -16.22773 -15.96049 -15.87692 -15.72139 -15.43961 -15.18765 -15.04307 -14.91354 -14.63626 -14.41095 -14.13173 -13.92052 -13.89852 -13.57324 -13.23096 -13.10117 -12.85621 -12.82590 -12.69844 -12.40687 -12.34989 -12.24548 -12.17577 -12.09953 -11.83067 -11.80211 -11.65524 -11.53491 -11.19734 -11.10645 -10.87743 -10.74754 -10.63157 -10.13805 -9.47164 -8.86730 -8.14661 -5.45138 1.31257 1.41634 1.46466 1.50961 1.77898 2.43409 2.66720 3.02198 3.08023 3.39918 3.61532 3.69048 3.74670 3.80035 3.86235 3.90070 3.97732 4.06787 4.22940 4.30212 4.31206 4.38935 4.45520 4.49533 4.51970 4.57523 4.59606 4.64398 4.72739 4.74157 4.75187 4.76654 4.85628 4.88759 4.94743 5.00286 5.05652 5.06701 5.11503 5.20223 5.26178 5.30188 5.30250 5.37312 5.42037 5.63944 5.83266 5.89852 5.92364 6.00180 6.15095 6.48935 6.95938 7.15378 7.66821 8.06792 9.05469 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.021814 B = 0.002350 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.255504 B =11912.504801 C =12427.205426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.047 3.953 3 N -0.537 5.537 4 C 0.011 3.989 5 C 0.057 3.943 6 O -0.390 6.390 7 C 0.082 3.918 8 H 0.112 0.888 9 C 0.518 3.482 10 O -0.572 6.572 11 N -0.703 5.703 12 C 0.142 3.858 13 C -0.054 4.054 14 C -0.142 4.142 15 C -0.118 4.118 16 C 0.123 3.877 17 N -0.619 5.619 18 C -0.244 4.244 19 H 0.049 0.951 20 C -0.040 4.040 21 N -0.960 5.960 22 Si 0.948 3.052 23 H -0.278 1.278 24 H -0.315 1.315 25 H -0.255 1.255 26 C 0.143 3.857 27 C -0.114 4.114 28 C 0.035 3.965 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.031 0.969 33 H 0.088 0.912 34 H 0.034 0.966 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.072 0.928 38 H 0.415 0.585 39 H 0.052 0.948 40 H 0.067 0.933 41 H 0.053 0.947 42 H 0.077 0.923 43 H 0.062 0.938 44 H 0.049 0.951 45 H 0.079 0.921 46 H 0.041 0.959 47 H 0.042 0.958 48 H 0.260 0.740 49 H 0.046 0.954 50 H 0.050 0.950 51 H 0.090 0.910 52 H 0.045 0.955 53 H 0.034 0.966 54 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.681 -5.524 -10.535 32.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.080 4.080 3 N -0.262 5.262 4 C -0.117 4.117 5 C -0.020 4.020 6 O -0.309 6.309 7 C 0.021 3.979 8 H 0.129 0.871 9 C 0.304 3.696 10 O -0.450 6.450 11 N -0.358 5.358 12 C 0.018 3.982 13 C -0.055 4.055 14 C -0.199 4.199 15 C -0.157 4.157 16 C -0.002 4.002 17 N -0.344 5.344 18 C -0.374 4.374 19 H 0.067 0.933 20 C -0.234 4.234 21 N -0.607 5.607 22 Si 0.777 3.223 23 H -0.205 1.205 24 H -0.244 1.244 25 H -0.179 1.179 26 C 0.018 3.982 27 C -0.153 4.153 28 C -0.093 4.093 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.050 0.950 33 H 0.106 0.894 34 H 0.052 0.948 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.090 0.910 38 H 0.254 0.746 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.096 0.904 43 H 0.081 0.919 44 H 0.068 0.932 45 H 0.097 0.903 46 H 0.059 0.941 47 H 0.060 0.940 48 H 0.069 0.931 49 H 0.064 0.936 50 H 0.068 0.932 51 H 0.109 0.891 52 H 0.064 0.936 53 H 0.052 0.948 54 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -30.294 -4.823 -10.884 32.550 hybrid contribution 1.119 -0.956 -0.381 1.520 sum -29.175 -5.779 -11.265 31.804 Atomic orbital electron populations 1.21910 0.93637 1.02888 1.02621 1.22216 0.96900 0.87465 1.01428 1.62357 1.02531 1.12520 1.48840 1.22971 1.01023 0.93957 0.93700 1.22996 0.79172 0.96231 1.03560 1.88090 1.19691 1.69680 1.53419 1.21953 0.88061 0.93005 0.94902 0.87073 1.20526 0.88240 0.78071 0.82787 1.90714 1.81391 1.44182 1.28716 1.45806 1.06307 1.56182 1.27458 1.21284 0.79019 1.00035 0.97884 1.20574 0.93942 0.96677 0.94263 1.21948 1.01882 0.93710 1.02364 1.21921 0.94690 1.00585 0.98549 1.21380 0.97528 0.96130 0.85153 1.44466 1.02674 1.74641 1.12629 1.18867 0.90575 1.14685 1.13298 0.93336 1.25938 0.95573 1.01576 1.00360 1.69981 0.99310 1.39302 1.52110 0.85881 0.77031 0.82063 0.77280 1.20452 1.24402 1.17884 1.21159 0.82387 0.98283 0.96332 1.21979 1.00401 0.98752 0.94196 1.22619 0.90242 0.94762 1.01710 0.91554 0.92163 0.91027 0.95041 0.89411 0.94789 0.86720 0.86615 0.90976 0.74604 0.92941 0.91486 0.92761 0.90367 0.91922 0.93178 0.90279 0.94081 0.93987 0.93128 0.93571 0.93175 0.89118 0.93643 0.94764 0.86874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.18 71.98 0.66 -0.37 16 2 C 0.05 0.44 6.00 86.31 0.52 0.96 16 3 N -0.54 -6.53 4.88 -895.23 -4.36 -10.89 16 4 C 0.01 0.13 4.94 86.32 0.43 0.56 16 5 C 0.06 0.78 7.01 72.02 0.50 1.28 16 6 O -0.39 -8.83 10.01 -130.02 -1.30 -10.13 16 7 C 0.08 1.51 3.22 29.88 0.10 1.60 16 8 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 9 C 0.52 12.46 7.18 87.66 0.63 13.09 16 10 O -0.57 -19.77 16.51 15.93 0.26 -19.50 16 11 N -0.70 -13.38 4.91 -463.06 -2.27 -15.65 16 12 C 0.14 3.33 4.57 86.38 0.39 3.72 16 13 C -0.05 -1.34 0.53 -52.13 -0.03 -1.36 16 14 C -0.14 -2.91 7.54 71.98 0.54 -2.36 16 15 C -0.12 -3.74 4.90 30.67 0.15 -3.59 16 16 C 0.12 4.94 3.73 86.36 0.32 5.26 16 17 N -0.62 -27.85 2.77 -699.11 -1.94 -29.78 16 18 C -0.24 -13.74 10.04 84.03 0.84 -12.90 16 19 H 0.05 3.00 8.06 -2.91 -0.02 2.98 16 20 C -0.04 -2.35 5.23 84.86 0.44 -1.91 16 21 N -0.96 -60.91 13.97 21.65 0.30 -60.61 16 22 Si 0.95 46.29 24.35 68.60 1.67 47.96 16 23 H -0.28 -12.90 6.62 99.48 0.66 -12.24 16 24 H -0.31 -15.77 7.11 99.48 0.71 -15.07 16 25 H -0.25 -11.58 6.64 99.48 0.66 -10.92 16 26 C 0.14 4.95 6.05 86.36 0.52 5.47 16 27 C -0.11 -3.06 4.75 30.69 0.15 -2.92 16 28 C 0.04 0.50 4.86 86.31 0.42 0.92 16 29 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.06 0.38 6.28 -2.39 -0.01 0.37 16 31 H 0.07 0.38 8.14 -2.38 -0.02 0.36 16 32 H 0.03 0.33 8.08 -2.39 -0.02 0.31 16 33 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.03 0.47 8.14 -2.38 -0.02 0.45 16 35 H 0.11 0.86 6.05 -2.39 -0.01 0.84 16 36 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.42 5.39 6.02 -92.71 -0.56 4.83 16 39 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.05 1.34 4.98 -2.39 -0.01 1.33 16 42 H 0.08 1.12 6.86 -2.39 -0.02 1.10 16 43 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 44 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 46 H 0.04 1.56 5.63 -2.38 -0.01 1.54 16 47 H 0.04 1.94 4.50 -2.39 -0.01 1.93 16 48 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 49 H 0.05 1.44 6.69 -2.39 -0.02 1.42 16 50 H 0.05 1.83 7.93 -2.39 -0.02 1.81 16 51 H 0.09 1.73 6.83 -2.39 -0.02 1.72 16 52 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 53 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 54 H 0.11 1.08 8.01 -2.39 -0.02 1.06 16 Total: -1.00 -76.73 395.68 -0.82 -77.55 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 0.23 Total: 13.61 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: 6.59 Total: 7.46 kcal Atomic # 7 Polarization: -108.67 SS G_CDS: -8.27 Total: -116.94 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -1.04 Total: -29.63 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 1.67 Total: 47.96 kcal Total: -76.73 -0.82 -77.55 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754721850.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.373 kcal (2) G-P(sol) polarization free energy of solvation -76.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds