Wall clock time and date at job start Sat Apr 11 2020 05:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46896 * 109.47431 * 2 1 4 4 C 1.47009 * 111.00083 * 66.36040 * 3 2 1 5 5 C 1.53102 * 109.25903 * 182.39139 * 4 3 2 6 6 O 1.43019 * 109.29337 * 303.17776 * 5 4 3 7 7 C 1.43015 * 113.73754 * 58.59663 * 6 5 4 8 8 H 1.08999 * 109.50766 * 61.35875 * 7 6 5 9 9 C 1.50705 * 109.50430 * 181.44121 * 7 6 5 10 10 O 1.21281 * 119.99869 * 4.91613 * 9 7 6 11 11 N 1.34770 * 119.99581 * 184.91401 * 9 7 6 12 12 C 1.46505 * 119.99548 * 180.02562 * 11 9 7 13 13 C 1.53002 * 109.46996 * 180.02562 * 12 11 9 14 14 C 1.52996 * 109.52553 * 60.07836 * 13 12 11 15 15 C 1.53040 * 109.50043 * 180.16053 * 13 12 11 16 16 C 1.53036 * 109.54035 * 181.31568 * 15 13 12 17 17 C 1.53191 * 109.31278 * 298.63307 * 16 15 13 18 18 N 1.46926 * 108.77387 * 54.63492 * 17 16 15 19 19 C 1.36935 * 120.62961 * 126.37416 * 18 17 16 20 20 H 1.08004 * 120.00098 * 331.83527 * 19 18 17 21 21 C 1.38813 * 120.00558 * 151.83993 * 19 18 17 22 22 N 1.31625 * 119.99447 * 343.07479 * 21 19 18 23 23 Si 1.86792 * 120.00223 * 163.06849 * 21 19 18 24 24 H 1.48503 * 109.47209 * 90.00511 * 23 21 19 25 25 H 1.48505 * 109.47294 * 210.00392 * 23 21 19 26 26 H 1.48496 * 109.47511 * 330.00126 * 23 21 19 27 27 C 1.46923 * 118.74123 * 306.38955 * 18 17 16 28 28 C 1.47017 * 111.00026 * 189.99638 * 3 2 1 29 29 H 1.09005 * 109.46868 * 59.99891 * 1 2 3 30 30 H 1.08996 * 109.47699 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47217 * 300.00490 * 1 2 3 32 32 H 1.08994 * 109.47217 * 239.99510 * 2 1 3 33 33 H 1.09005 * 109.46868 * 120.00109 * 2 1 3 34 34 H 1.08999 * 109.50886 * 302.32694 * 4 3 2 35 35 H 1.09004 * 109.50672 * 62.45986 * 4 3 2 36 36 H 1.09005 * 109.50107 * 63.08969 * 5 4 3 37 37 H 1.08996 * 109.50671 * 183.17213 * 5 4 3 38 38 H 0.96994 * 120.00941 * 0.02562 * 11 9 7 39 39 H 1.09000 * 109.47391 * 59.99933 * 12 11 9 40 40 H 1.09001 * 109.47151 * 299.99261 * 12 11 9 41 41 H 1.08999 * 109.47223 * 299.91848 * 14 13 12 42 42 H 1.08995 * 109.47751 * 59.92157 * 14 13 12 43 43 H 1.09005 * 109.47439 * 179.97438 * 14 13 12 44 44 H 1.09004 * 109.45686 * 301.33771 * 15 13 12 45 45 H 1.09005 * 109.45780 * 61.29100 * 15 13 12 46 46 H 1.08995 * 109.50037 * 58.58686 * 16 15 13 47 47 H 1.09008 * 109.49571 * 178.68476 * 16 15 13 48 48 H 1.08998 * 109.59002 * 174.42244 * 17 16 15 49 49 H 1.09008 * 109.58722 * 294.70810 * 17 16 15 50 50 H 0.96997 * 119.99477 * 179.97438 * 22 21 19 51 51 H 1.09001 * 109.58999 * 293.82271 * 27 18 17 52 52 H 1.09001 * 109.59098 * 173.39383 * 27 18 17 53 53 H 1.09000 * 109.50389 * 57.67559 * 28 3 2 54 54 H 1.08998 * 109.54284 * 297.56295 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6765 2.0651 1.2573 5 6 2.1516 3.5190 1.1909 6 8 3.5570 3.5453 0.9271 7 6 3.9268 2.8912 -0.2898 8 1 3.4497 3.3925 -1.1319 9 6 5.4238 2.9444 -0.4549 10 8 6.1150 3.4087 0.4270 11 7 5.9943 2.4761 -1.5825 12 6 7.4497 2.5273 -1.7427 13 6 7.8342 1.9378 -3.1013 14 6 7.1717 2.7489 -4.2166 15 6 9.3547 1.9873 -3.2677 16 6 9.7379 1.4281 -4.6397 17 6 9.2885 -0.0334 -4.7346 18 7 7.8525 -0.1071 -4.4325 19 6 6.9867 -0.7132 -5.3032 20 1 7.2100 -0.7347 -6.3596 21 6 5.8218 -1.2999 -4.8280 22 7 5.6985 -1.5743 -3.5466 23 14 4.4293 -1.7000 -6.0070 24 1 4.6101 -3.0749 -6.5383 25 1 3.1323 -1.6133 -5.2889 26 1 4.4383 -0.7298 -7.1312 27 6 7.3632 0.4821 -3.1787 28 6 3.4697 1.4310 -0.2382 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 0.5963 2.0414 1.4008 35 1 2.1661 1.5599 2.0899 36 1 1.6222 4.0387 0.3922 37 1 1.9498 4.0117 2.1420 38 1 5.4416 2.1051 -2.2879 39 1 7.9233 1.9501 -0.9486 40 1 7.7850 3.5631 -1.6886 41 1 6.0887 2.7109 -4.0994 42 1 7.5071 3.7845 -4.1612 43 1 7.4466 2.3285 -5.1841 44 1 9.6952 3.0198 -3.1884 45 1 9.8251 1.3890 -2.4874 46 1 9.2480 2.0107 -5.4199 47 1 10.8190 1.4852 -4.7669 48 1 9.4695 -0.4067 -5.7426 49 1 9.8465 -0.6346 -4.0167 50 1 4.8844 -1.9839 -3.2145 51 1 7.7623 -0.0766 -2.3321 52 1 6.2739 0.4491 -3.1601 53 1 3.6983 0.9445 -1.1865 54 1 3.9885 0.9155 0.5699 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754734737.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:56 Heat of formation + Delta-G solvation = -77.440410 kcal Electronic energy + Delta-G solvation = -32217.161700 eV Core-core repulsion = 28188.560035 eV Total energy + Delta-G solvation = -4028.601665 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.55897 -40.42489 -39.46701 -37.21756 -36.29525 -34.93327 -33.40399 -32.38551 -31.86736 -31.55253 -28.52521 -27.87877 -27.20912 -26.54464 -25.42697 -23.95692 -23.46479 -22.13240 -21.61553 -21.33065 -19.63472 -18.58392 -18.40534 -17.85875 -17.19538 -16.95054 -16.65551 -16.42405 -16.22055 -15.85967 -15.71164 -15.50860 -15.35291 -15.16019 -14.92528 -14.80610 -14.61074 -14.31644 -13.94318 -13.78787 -13.72016 -13.16982 -13.05023 -13.00736 -12.92475 -12.76402 -12.70038 -12.55224 -12.54585 -12.27236 -12.13047 -11.85265 -11.83252 -11.80746 -11.70456 -11.39250 -11.20940 -10.95605 -10.86305 -10.75375 -10.48721 -10.10703 -9.56076 -8.58830 -7.81280 -5.25782 1.43341 1.47882 1.51715 1.59299 1.80364 2.54753 2.61383 3.00114 3.31532 3.58484 3.61439 3.68633 3.84105 3.91545 3.96016 3.99766 4.05149 4.05915 4.21632 4.25382 4.37779 4.44032 4.46302 4.52846 4.54541 4.56864 4.61992 4.69604 4.74941 4.76003 4.81883 4.86399 4.95140 5.01024 5.03939 5.06346 5.13469 5.19390 5.28383 5.29292 5.33686 5.41669 5.47640 5.52022 5.65684 5.74891 5.76176 5.80243 5.88780 5.96621 6.44588 6.44814 7.10265 7.21351 7.91819 8.44863 9.23860 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.009827 B = 0.004300 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2848.544569 B = 6510.071802 C = 8853.104296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.045 3.955 3 N -0.535 5.535 4 C 0.012 3.988 5 C 0.058 3.942 6 O -0.383 6.383 7 C 0.088 3.912 8 H 0.110 0.890 9 C 0.519 3.481 10 O -0.568 6.568 11 N -0.707 5.707 12 C 0.143 3.857 13 C -0.091 4.091 14 C -0.119 4.119 15 C -0.095 4.095 16 C -0.123 4.123 17 C 0.136 3.864 18 N -0.603 5.603 19 C -0.256 4.256 20 H 0.062 0.938 21 C -0.039 4.039 22 N -0.927 5.927 23 Si 0.953 3.047 24 H -0.293 1.293 25 H -0.290 1.290 26 H -0.272 1.272 27 C 0.198 3.802 28 C 0.037 3.963 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.032 0.968 34 H 0.117 0.883 35 H 0.034 0.966 36 H 0.074 0.926 37 H 0.125 0.875 38 H 0.409 0.591 39 H 0.049 0.951 40 H 0.075 0.925 41 H 0.041 0.959 42 H 0.063 0.937 43 H 0.056 0.944 44 H 0.078 0.922 45 H 0.050 0.950 46 H 0.065 0.935 47 H 0.078 0.922 48 H 0.050 0.950 49 H 0.006 0.994 50 H 0.248 0.752 51 H -0.020 1.020 52 H 0.067 0.933 53 H 0.089 0.911 54 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.296 9.417 5.348 13.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.082 4.082 3 N -0.260 5.260 4 C -0.115 4.115 5 C -0.018 4.018 6 O -0.302 6.302 7 C 0.026 3.974 8 H 0.128 0.872 9 C 0.304 3.696 10 O -0.446 6.446 11 N -0.360 5.360 12 C 0.019 3.981 13 C -0.093 4.093 14 C -0.176 4.176 15 C -0.133 4.133 16 C -0.162 4.162 17 C 0.010 3.990 18 N -0.326 5.326 19 C -0.387 4.387 20 H 0.080 0.920 21 C -0.235 4.235 22 N -0.573 5.573 23 Si 0.782 3.218 24 H -0.220 1.220 25 H -0.216 1.216 26 H -0.197 1.197 27 C 0.072 3.928 28 C -0.092 4.092 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.051 0.949 34 H 0.134 0.866 35 H 0.052 0.948 36 H 0.092 0.908 37 H 0.143 0.857 38 H 0.246 0.754 39 H 0.067 0.933 40 H 0.093 0.907 41 H 0.060 0.940 42 H 0.082 0.918 43 H 0.075 0.925 44 H 0.097 0.903 45 H 0.069 0.931 46 H 0.084 0.916 47 H 0.097 0.903 48 H 0.069 0.931 49 H 0.024 0.976 50 H 0.058 0.942 51 H -0.002 1.002 52 H 0.086 0.914 53 H 0.107 0.893 54 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -7.024 9.989 5.769 13.506 hybrid contribution -0.542 -1.742 -0.169 1.832 sum -7.566 8.247 5.600 12.515 Atomic orbital electron populations 1.21736 0.92557 1.02561 1.02828 1.22175 0.97791 0.87514 1.00731 1.62309 1.11418 1.17361 1.34918 1.22980 1.03331 0.95396 0.89829 1.23023 0.79630 0.95525 1.03630 1.88073 1.25765 1.76641 1.39698 1.21836 0.91320 0.93874 0.90331 0.87244 1.20417 0.89955 0.77418 0.81767 1.90663 1.65122 1.46755 1.42090 1.45969 1.08962 1.61959 1.19064 1.21330 0.79215 1.00750 0.96815 1.21353 0.97222 0.97342 0.93364 1.21644 0.99179 0.98532 0.98276 1.21378 0.93221 1.01257 0.97472 1.21916 1.00615 0.96429 0.97198 1.21097 0.84671 0.95276 0.97920 1.44212 1.02209 1.64725 1.21471 1.19408 1.01156 1.28797 0.89303 0.92041 1.25588 1.02046 0.98725 0.97155 1.70187 1.27032 1.46119 1.13999 0.85501 0.79598 0.77711 0.78968 1.22033 1.21556 1.19731 1.20549 0.98730 0.87846 0.85664 1.22510 0.89420 0.95082 1.02174 0.91956 0.91209 0.91410 0.91581 0.94920 0.86552 0.94761 0.90781 0.85725 0.75447 0.93292 0.90656 0.93973 0.91811 0.92508 0.90307 0.93132 0.91637 0.90306 0.93093 0.97621 0.94229 1.00186 0.91447 0.89305 0.95272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.85 71.98 0.71 -1.65 16 2 C 0.05 1.03 5.68 86.30 0.49 1.52 16 3 N -0.53 -12.79 4.73 -895.24 -4.23 -17.02 16 4 C 0.01 0.24 5.44 86.32 0.47 0.71 16 5 C 0.06 1.15 7.01 72.02 0.50 1.65 16 6 O -0.38 -11.31 10.01 -130.02 -1.30 -12.61 16 7 C 0.09 2.53 3.22 29.88 0.10 2.63 16 8 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 9 C 0.52 17.78 7.18 87.66 0.63 18.41 16 10 O -0.57 -23.59 16.51 15.93 0.26 -23.32 16 11 N -0.71 -22.82 4.96 -463.05 -2.30 -25.12 16 12 C 0.14 4.65 4.57 86.38 0.39 5.04 16 13 C -0.09 -3.05 0.53 -52.10 -0.03 -3.08 16 14 C -0.12 -3.73 7.81 71.98 0.56 -3.17 16 15 C -0.10 -2.86 4.71 30.62 0.14 -2.71 16 16 C -0.12 -3.76 5.74 30.67 0.18 -3.58 16 17 C 0.14 5.38 6.52 86.36 0.56 5.94 16 18 N -0.60 -28.28 2.43 -699.08 -1.70 -29.98 16 19 C -0.26 -13.25 9.58 84.03 0.81 -12.45 16 20 H 0.06 3.15 7.89 -2.91 -0.02 3.13 16 21 C -0.04 -2.05 4.92 84.86 0.42 -1.63 16 22 N -0.93 -50.97 11.20 21.65 0.24 -50.73 16 23 Si 0.95 42.38 29.59 68.60 2.03 44.41 16 24 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 25 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 26 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 27 C 0.20 8.73 3.72 86.37 0.32 9.05 16 28 C 0.04 1.07 4.88 86.31 0.42 1.49 16 29 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 30 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.07 0.94 6.52 -2.39 -0.02 0.93 16 32 H 0.07 1.71 8.04 -2.39 -0.02 1.69 16 33 H 0.03 0.75 8.12 -2.38 -0.02 0.73 16 34 H 0.12 1.65 6.38 -2.39 -0.02 1.64 16 35 H 0.03 0.75 8.14 -2.38 -0.02 0.73 16 36 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 37 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.41 12.97 6.10 -92.71 -0.57 12.41 16 39 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.04 1.32 6.87 -2.39 -0.02 1.31 16 42 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.06 1.98 5.97 -2.38 -0.01 1.97 16 44 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 45 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 46 H 0.07 2.00 6.33 -2.39 -0.02 1.99 16 47 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 48 H 0.05 1.99 7.93 -2.39 -0.02 1.97 16 49 H 0.01 0.24 8.14 -2.38 -0.02 0.22 16 50 H 0.25 13.31 8.31 -92.71 -0.77 12.54 16 51 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 52 H 0.07 3.23 4.96 -2.39 -0.01 3.22 16 53 H 0.09 2.72 7.96 -2.39 -0.02 2.70 16 54 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -65.64 405.59 -0.01 -65.65 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: 0.31 Total: 30.55 kcal Atomic # 6 Polarization: 11.50 SS G_CDS: 6.68 Total: 18.18 kcal Atomic # 7 Polarization: -114.87 SS G_CDS: -7.99 Total: -122.85 kcal Atomic # 8 Polarization: -34.89 SS G_CDS: -1.04 Total: -35.93 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -65.64 -0.01 -65.65 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754734737.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.791 kcal (2) G-P(sol) polarization free energy of solvation -65.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds