Wall clock time and date at job start Sat Apr 11 2020 05:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 109.47028 * 2 1 4 4 N 1.46509 * 109.46763 * 240.00559 * 2 1 3 5 5 C 1.34771 * 120.00181 * 84.99794 * 4 2 1 6 6 O 1.21284 * 119.99970 * 0.02562 * 5 4 2 7 7 C 1.50696 * 120.00020 * 179.97438 * 5 4 2 8 8 C 1.53008 * 109.47290 * 180.02562 * 7 5 4 9 9 C 1.53001 * 109.47501 * 300.00290 * 7 5 4 10 10 C 1.53003 * 109.47064 * 60.00515 * 7 5 4 11 11 C 1.50697 * 109.47327 * 120.00762 * 2 1 3 12 12 O 1.21277 * 120.00497 * 100.39670 * 11 2 1 13 13 N 1.34774 * 119.99674 * 280.39500 * 11 2 1 14 14 C 1.46502 * 120.00503 * 184.65030 * 13 11 2 15 15 C 1.46504 * 120.00071 * 4.65072 * 13 11 2 16 16 H 1.09000 * 109.47442 * 5.37828 * 15 13 11 17 17 C 1.53005 * 109.47151 * 125.37531 * 15 13 11 18 18 N 1.46504 * 109.46782 * 305.00088 * 17 15 13 19 19 C 1.36934 * 119.99473 * 179.97438 * 18 17 15 20 20 H 1.08005 * 120.00647 * 0.02562 * 19 18 17 21 21 C 1.38812 * 119.99836 * 179.97438 * 19 18 17 22 22 N 1.31618 * 120.00192 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00103 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47607 * 89.99874 * 23 21 19 25 25 H 1.48508 * 109.46913 * 210.00293 * 23 21 19 26 26 H 1.48504 * 109.46983 * 329.99902 * 23 21 19 27 27 C 1.53000 * 109.47398 * 245.37578 * 15 13 11 28 28 C 1.53003 * 117.49919 * 248.74771 * 27 15 13 29 29 C 1.52995 * 117.49983 * 180.08486 * 27 15 13 30 30 H 1.08998 * 109.46670 * 305.04346 * 1 2 3 31 31 H 1.09001 * 109.47266 * 65.04443 * 1 2 3 32 32 H 1.08995 * 109.46956 * 185.04198 * 1 2 3 33 33 H 0.97000 * 119.99599 * 264.99694 * 4 2 1 34 34 H 1.08999 * 109.46359 * 60.00195 * 8 7 5 35 35 H 1.08998 * 109.47021 * 180.02562 * 8 7 5 36 36 H 1.08999 * 109.46877 * 300.00862 * 8 7 5 37 37 H 1.08997 * 109.46721 * 59.99660 * 9 7 5 38 38 H 1.08997 * 109.47060 * 179.97438 * 9 7 5 39 39 H 1.09003 * 109.46998 * 299.99755 * 9 7 5 40 40 H 1.08999 * 109.46989 * 59.99207 * 10 7 5 41 41 H 1.08998 * 109.47344 * 180.02562 * 10 7 5 42 42 H 1.09005 * 109.46802 * 299.99862 * 10 7 5 43 43 H 1.09001 * 109.46867 * 275.03051 * 14 13 11 44 44 H 1.09002 * 109.46703 * 35.02156 * 14 13 11 45 45 H 1.08998 * 109.47477 * 155.02470 * 14 13 11 46 46 H 1.08996 * 109.47163 * 65.00143 * 17 15 13 47 47 H 1.08999 * 109.47009 * 185.00053 * 17 15 13 48 48 H 0.96994 * 120.00388 * 359.97438 * 18 17 15 49 49 H 0.97001 * 120.00102 * 179.97438 * 22 21 19 50 50 H 1.09004 * 115.54956 * 34.41490 * 27 15 13 51 51 H 1.09001 * 117.49470 * 359.97438 * 28 27 15 52 52 H 1.09001 * 117.49744 * 145.01859 * 28 27 15 53 53 H 1.08999 * 117.50001 * 214.97916 * 29 27 15 54 54 H 1.08997 * 117.49920 * 0.02562 * 29 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1470 -0.0182 -2.3572 6 8 1.8590 1.1587 -2.4115 7 6 2.6498 -0.7283 -3.5876 8 6 2.7017 0.2550 -4.7587 9 6 4.0525 -1.2784 -3.3216 10 6 1.7061 -1.8825 -3.9317 11 6 2.0324 -0.7105 1.2303 12 8 2.4133 -1.8594 1.1541 13 7 2.0585 -0.0692 2.4154 14 6 2.6407 -0.7234 3.5898 15 6 1.5046 1.2823 2.5292 16 1 1.0349 1.5632 1.5865 17 6 0.4612 1.3134 3.6479 18 7 -0.5526 0.2856 3.3987 19 6 -1.5937 0.1246 4.2735 20 1 -1.6677 0.7555 5.1470 21 6 -2.5546 -0.8488 4.0371 22 7 -2.4648 -1.6174 2.9724 23 14 -3.9753 -1.0680 5.2301 24 1 -5.1081 -0.2021 4.8154 25 1 -4.4103 -2.4879 5.2262 26 1 -3.5367 -0.6885 6.5972 27 6 2.6286 2.2686 2.8527 28 6 2.6281 2.9095 4.2421 29 6 2.2506 3.7423 3.0144 30 1 -0.3632 0.5901 0.8414 31 1 -0.3634 0.4336 -0.9317 32 1 -0.3633 -1.0236 0.0903 33 1 2.2490 -1.6317 -1.1528 34 1 3.3742 1.0769 -4.5133 35 1 3.0649 -0.2588 -5.6487 36 1 1.7025 0.6473 -4.9483 37 1 4.0159 -1.9788 -2.4873 38 1 4.4159 -1.7924 -4.2114 39 1 4.7248 -0.4561 -3.0766 40 1 0.7068 -1.4906 -4.1211 41 1 2.0700 -2.3965 -4.8213 42 1 1.6695 -2.5830 -3.0972 43 1 1.8885 -1.3532 4.0651 44 1 3.4866 -1.3378 3.2814 45 1 2.9800 0.0337 4.2967 46 1 0.9477 1.1197 4.6039 47 1 -0.0141 2.2939 3.6742 48 1 -0.4864 -0.2808 2.6141 49 1 -3.1362 -2.2979 2.8075 50 1 3.5956 2.0436 2.4027 51 1 1.8267 2.6286 4.9255 52 1 3.5947 3.1063 4.7059 53 1 2.9689 4.4868 2.6711 54 1 1.2010 4.0091 2.8908 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755563392.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:09 Heat of formation + Delta-G solvation = -57.590892 kcal Electronic energy + Delta-G solvation = -32151.376626 eV Core-core repulsion = 28123.635701 eV Total energy + Delta-G solvation = -4027.740925 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.94034 -40.86943 -39.25897 -36.73488 -36.46786 -36.17398 -35.64556 -32.99447 -31.99267 -29.66507 -28.25495 -28.17494 -28.02865 -26.17599 -25.55672 -24.09530 -23.34933 -23.07507 -21.38502 -20.80681 -20.03984 -19.07396 -18.42492 -17.94822 -17.34189 -16.94543 -16.68869 -16.35974 -16.20495 -16.09956 -15.52546 -15.31306 -15.06427 -14.91273 -14.79235 -14.68560 -14.53437 -14.08772 -13.94394 -13.50553 -13.36427 -13.26863 -13.09159 -13.07146 -13.01303 -12.91792 -12.86714 -12.75516 -12.74392 -12.62859 -12.36997 -12.21762 -12.00945 -11.90992 -11.86897 -11.76652 -11.32677 -11.06526 -10.93974 -10.81183 -10.74315 -10.27959 -9.72884 -8.98316 -7.93348 -5.21843 1.35950 1.46914 1.47658 1.55223 1.55843 1.67366 2.24849 2.55388 2.89056 3.19736 3.41116 3.54758 3.62986 3.81550 3.84895 3.89573 3.91371 3.99396 4.08036 4.12230 4.23422 4.27647 4.28481 4.42158 4.54124 4.57401 4.64215 4.66246 4.71424 4.71933 4.82472 4.82974 4.91177 4.93663 4.94099 4.95363 5.01232 5.04811 5.07820 5.12598 5.18177 5.23497 5.28415 5.31849 5.35364 5.37947 5.46052 5.52006 6.24069 6.27399 6.42686 6.93849 7.12712 7.35620 8.10318 8.33655 9.29214 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010409 B = 0.003720 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2689.284484 B = 7525.906441 C = 8990.749815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.136 3.864 3 H 0.112 0.888 4 N -0.706 5.706 5 C 0.520 3.480 6 O -0.574 6.574 7 C -0.081 4.081 8 C -0.124 4.124 9 C -0.138 4.138 10 C -0.141 4.141 11 C 0.512 3.488 12 O -0.568 6.568 13 N -0.585 5.585 14 C 0.097 3.903 15 C 0.155 3.845 16 H 0.093 0.907 17 C 0.141 3.859 18 N -0.742 5.742 19 C -0.242 4.242 20 H 0.077 0.923 21 C -0.071 4.071 22 N -0.964 5.964 23 Si 0.968 3.032 24 H -0.288 1.288 25 H -0.300 1.300 26 H -0.269 1.269 27 C -0.172 4.172 28 C -0.174 4.174 29 C -0.162 4.162 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.048 0.952 33 H 0.412 0.588 34 H 0.052 0.948 35 H 0.089 0.911 36 H 0.048 0.952 37 H 0.060 0.940 38 H 0.094 0.906 39 H 0.056 0.944 40 H 0.052 0.948 41 H 0.095 0.905 42 H 0.060 0.940 43 H 0.032 0.968 44 H 0.071 0.929 45 H 0.097 0.903 46 H 0.038 0.962 47 H 0.039 0.961 48 H 0.377 0.623 49 H 0.248 0.752 50 H 0.115 0.885 51 H 0.095 0.905 52 H 0.112 0.888 53 H 0.114 0.886 54 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.852 5.610 -9.910 19.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.027 3.973 3 H 0.130 0.870 4 N -0.359 5.359 5 C 0.308 3.692 6 O -0.453 6.453 7 C -0.084 4.084 8 C -0.181 4.181 9 C -0.196 4.196 10 C -0.199 4.199 11 C 0.299 3.701 12 O -0.448 6.448 13 N -0.315 5.315 14 C -0.045 4.045 15 C 0.051 3.949 16 H 0.110 0.890 17 C 0.014 3.986 18 N -0.386 5.386 19 C -0.374 4.374 20 H 0.095 0.905 21 C -0.263 4.263 22 N -0.615 5.615 23 Si 0.798 3.202 24 H -0.215 1.215 25 H -0.227 1.227 26 H -0.194 1.194 27 C -0.192 4.192 28 C -0.211 4.211 29 C -0.200 4.200 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.068 0.932 33 H 0.250 0.750 34 H 0.071 0.929 35 H 0.108 0.892 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.112 0.888 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.113 0.887 42 H 0.079 0.921 43 H 0.051 0.949 44 H 0.090 0.910 45 H 0.115 0.885 46 H 0.056 0.944 47 H 0.057 0.943 48 H 0.211 0.789 49 H 0.057 0.943 50 H 0.133 0.867 51 H 0.114 0.886 52 H 0.130 0.870 53 H 0.133 0.867 54 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 15.765 5.878 -9.778 19.460 hybrid contribution -1.266 -1.016 0.672 1.757 sum 14.499 4.862 -9.105 17.798 Atomic orbital electron populations 1.22043 0.92654 1.02698 1.03229 1.20645 0.95380 0.97629 0.83663 0.86990 1.45844 1.66796 1.14975 1.08313 1.21345 0.76129 0.86850 0.84832 1.90664 1.51586 1.17539 1.85478 1.20882 0.98304 0.97301 0.91937 1.21659 1.02186 0.97955 0.96306 1.21886 0.92807 1.01161 1.03709 1.21911 0.98316 0.96180 1.03476 1.20714 0.77600 0.86374 0.85365 1.90621 1.50189 1.17865 1.86125 1.47666 1.58375 1.16535 1.08940 1.21544 0.97518 0.98237 0.87244 1.21122 0.93004 0.80476 1.00300 0.88954 1.21308 0.88848 0.92306 0.96121 1.42582 1.26686 1.40529 1.28850 1.19580 1.01073 1.13431 1.03303 0.90478 1.25480 1.01960 0.99107 0.99787 1.69818 1.37368 1.24569 1.29695 0.85219 0.79775 0.76160 0.79049 1.21543 1.22725 1.19429 1.22492 0.99206 0.94429 1.03042 1.23233 1.04078 1.03140 0.90621 1.23067 1.02934 0.92143 1.01818 0.91126 0.90892 0.93235 0.74997 0.92882 0.89215 0.93266 0.92140 0.88752 0.92515 0.92903 0.88667 0.92135 0.94901 0.91048 0.88491 0.94441 0.94295 0.78887 0.94280 0.86667 0.88650 0.86957 0.86730 0.88919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.43 8.78 71.98 0.63 -4.79 16 2 C 0.14 4.43 2.11 44.24 0.09 4.52 16 3 H 0.11 3.54 6.43 -2.39 -0.02 3.52 16 4 N -0.71 -20.35 4.83 -446.09 -2.15 -22.51 16 5 C 0.52 14.46 6.45 87.66 0.56 15.02 16 6 O -0.57 -19.61 15.64 -3.04 -0.05 -19.66 16 7 C -0.08 -1.58 0.87 -52.93 -0.05 -1.63 16 8 C -0.12 -2.23 7.76 71.98 0.56 -1.67 16 9 C -0.14 -2.13 8.37 71.98 0.60 -1.53 16 10 C -0.14 -2.39 8.37 71.98 0.60 -1.78 16 11 C 0.51 18.39 6.92 87.66 0.61 19.00 16 12 O -0.57 -22.95 15.63 -3.02 -0.05 -23.00 16 13 N -0.58 -19.37 2.20 -822.58 -1.81 -21.18 16 14 C 0.10 3.04 9.33 127.77 1.19 4.23 16 15 C 0.15 4.70 1.93 44.99 0.09 4.78 16 16 H 0.09 2.94 4.36 -2.39 -0.01 2.93 16 17 C 0.14 5.15 4.09 86.38 0.35 5.50 16 18 N -0.74 -35.97 5.27 -343.44 -1.81 -37.78 16 19 C -0.24 -13.11 9.99 84.03 0.84 -12.27 16 20 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 21 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 22 N -0.96 -58.69 13.06 21.65 0.28 -58.41 16 23 Si 0.97 45.97 29.55 68.60 2.03 48.00 16 24 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 25 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 26 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 27 C -0.17 -3.92 5.25 -10.79 -0.06 -3.98 16 28 C -0.17 -3.45 9.58 30.62 0.29 -3.16 16 29 C -0.16 -3.16 9.94 30.62 0.30 -2.86 16 30 H 0.07 2.81 4.96 -2.39 -0.01 2.80 16 31 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 32 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.41 11.38 6.57 -92.71 -0.61 10.77 16 34 H 0.05 1.05 8.10 -2.39 -0.02 1.03 16 35 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.05 1.02 8.10 -2.39 -0.02 1.00 16 37 H 0.06 0.98 7.56 -2.39 -0.02 0.96 16 38 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.06 1.06 7.56 -2.38 -0.02 1.04 16 43 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.07 2.13 7.65 -2.39 -0.02 2.11 16 45 H 0.10 2.47 7.34 -2.39 -0.02 2.45 16 46 H 0.04 1.35 6.07 -2.39 -0.01 1.33 16 47 H 0.04 1.40 7.44 -2.39 -0.02 1.38 16 48 H 0.38 19.54 5.56 -92.71 -0.52 19.03 16 49 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 50 H 0.12 2.46 8.14 -2.38 -0.02 2.44 16 51 H 0.10 2.16 5.80 -2.39 -0.01 2.15 16 52 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 53 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 54 H 0.09 1.96 7.65 -2.39 -0.02 1.94 16 Total: -1.00 -70.76 419.60 3.31 -67.44 By element: Atomic # 1 Polarization: 51.45 SS G_CDS: -0.22 Total: 51.23 kcal Atomic # 6 Polarization: 8.77 SS G_CDS: 7.09 Total: 15.86 kcal Atomic # 7 Polarization: -134.39 SS G_CDS: -5.49 Total: -139.88 kcal Atomic # 8 Polarization: -42.56 SS G_CDS: -0.09 Total: -42.66 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -70.76 3.31 -67.44 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755563392.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.853 kcal (2) G-P(sol) polarization free energy of solvation -70.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds