Wall clock time and date at job start Sat Apr 11 2020 05:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47691 * 2 1 4 4 N 1.46500 * 109.47288 * 120.00432 * 2 1 3 5 5 C 1.34771 * 119.99979 * 275.00148 * 4 2 1 6 6 O 1.21283 * 120.00067 * 359.97438 * 5 4 2 7 7 C 1.50700 * 120.00245 * 179.97438 * 5 4 2 8 8 C 1.53005 * 109.47303 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.47335 * 300.00046 * 7 5 4 10 10 C 1.53005 * 109.46708 * 60.00146 * 7 5 4 11 11 C 1.50703 * 109.47262 * 239.99972 * 2 1 3 12 12 O 1.21284 * 120.00380 * 256.62284 * 11 2 1 13 13 N 1.34783 * 119.99836 * 76.61954 * 11 2 1 14 14 C 1.46499 * 120.00211 * 184.01729 * 13 11 2 15 15 C 1.46502 * 119.99637 * 4.01154 * 13 11 2 16 16 H 1.08997 * 109.47348 * 354.57031 * 15 13 11 17 17 C 1.53001 * 109.46437 * 114.56894 * 15 13 11 18 18 N 1.46498 * 109.47213 * 304.99614 * 17 15 13 19 19 C 1.36933 * 120.00086 * 180.02562 * 18 17 15 20 20 H 1.08007 * 120.00255 * 0.02562 * 19 18 17 21 21 C 1.38811 * 120.00366 * 180.02562 * 19 18 17 22 22 N 1.31620 * 119.99761 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00323 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47439 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47396 * 119.99887 * 23 21 19 26 26 H 1.48507 * 109.46837 * 239.99700 * 23 21 19 27 27 C 1.53002 * 109.47162 * 234.56117 * 15 13 11 28 28 C 1.52996 * 117.50321 * 248.75290 * 27 15 13 29 29 C 1.52995 * 117.49981 * 180.08731 * 27 15 13 30 30 H 1.09002 * 109.47579 * 175.06685 * 1 2 3 31 31 H 1.08992 * 109.46994 * 295.07204 * 1 2 3 32 32 H 1.09005 * 109.46826 * 55.06755 * 1 2 3 33 33 H 0.96999 * 120.00131 * 94.99199 * 4 2 1 34 34 H 1.09002 * 109.46658 * 59.99888 * 8 7 5 35 35 H 1.08995 * 109.47131 * 180.02562 * 8 7 5 36 36 H 1.09000 * 109.47347 * 300.00202 * 8 7 5 37 37 H 1.08998 * 109.46953 * 59.99961 * 9 7 5 38 38 H 1.08998 * 109.46846 * 180.02562 * 9 7 5 39 39 H 1.09001 * 109.46497 * 299.99846 * 9 7 5 40 40 H 1.09000 * 109.47436 * 60.00108 * 10 7 5 41 41 H 1.09004 * 109.46722 * 180.02562 * 10 7 5 42 42 H 1.09006 * 109.47067 * 299.99744 * 10 7 5 43 43 H 1.09007 * 109.47155 * 94.17370 * 14 13 11 44 44 H 1.08992 * 109.47302 * 214.17629 * 14 13 11 45 45 H 1.09005 * 109.46751 * 334.17907 * 14 13 11 46 46 H 1.08994 * 109.47410 * 65.00087 * 17 15 13 47 47 H 1.09004 * 109.46988 * 184.99565 * 17 15 13 48 48 H 0.96996 * 119.99766 * 0.02562 * 18 17 15 49 49 H 0.97005 * 120.00346 * 180.02562 * 22 21 19 50 50 H 1.09006 * 115.54840 * 34.42392 * 27 15 13 51 51 H 1.09005 * 117.49855 * 359.97438 * 28 27 15 52 52 H 1.08995 * 117.50218 * 145.02318 * 28 27 15 53 53 H 1.09000 * 117.50370 * 214.98326 * 29 27 15 54 54 H 1.09000 * 117.49714 * 359.97438 * 29 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1471 -0.0185 2.3571 6 8 1.8590 1.1584 2.4115 7 6 2.6489 -0.7290 3.5877 8 6 2.7010 0.2542 4.7588 9 6 1.7044 -1.8826 3.9313 10 6 4.0514 -1.2799 3.3221 11 6 2.0324 -0.7104 -1.2305 12 8 2.4636 -1.8407 -1.1446 13 7 2.0023 -0.0897 -2.4265 14 6 2.4079 -0.8099 -3.6360 15 6 1.5640 1.3053 -2.5168 16 1 1.2132 1.6399 -1.5406 17 6 2.7365 2.1802 -2.9649 18 7 3.8689 1.9814 -2.0570 19 6 5.0378 2.6650 -2.2605 20 1 5.1248 3.3511 -3.0902 21 6 6.1111 2.4763 -1.4007 22 7 6.0050 1.6406 -0.3893 23 14 7.7054 3.4094 -1.6779 24 1 7.5681 4.2798 -2.8732 25 1 8.0029 4.2458 -0.4875 26 1 8.8129 2.4438 -1.8938 27 6 0.4263 1.4175 -3.5337 28 6 0.7170 2.1585 -4.8403 29 6 -0.1716 2.8051 -3.7747 30 1 -0.3634 -1.0238 -0.0884 31 1 -0.3633 0.4354 0.9308 32 1 -0.3633 0.5885 -0.8426 33 1 2.2490 -1.6319 1.1525 34 1 1.7021 0.6471 4.9480 35 1 3.0644 -0.2596 5.6487 36 1 3.3742 1.0758 4.5138 37 1 1.6677 -2.5830 3.0969 38 1 2.0672 -2.3962 4.8216 39 1 0.7053 -1.4900 4.1205 40 1 4.7243 -0.4581 3.0773 41 1 4.4142 -1.7943 4.2120 42 1 4.0146 -1.9803 2.4876 43 1 1.5282 -1.2401 -4.1149 44 1 2.8950 -0.1191 -4.3241 45 1 3.1022 -1.6066 -3.3688 46 1 3.0298 1.9039 -3.9776 47 1 2.4358 3.2278 -2.9468 48 1 3.7907 1.3655 -1.3117 49 1 6.7548 1.5090 0.2118 50 1 -0.2496 0.5635 -3.5791 51 1 1.7188 2.5665 -4.9754 52 1 0.2322 1.7924 -5.7452 53 1 -1.2406 2.8640 -3.9790 54 1 0.2453 3.6379 -3.2084 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755563395.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:18 Heat of formation + Delta-G solvation = -59.001228 kcal Electronic energy + Delta-G solvation = -32535.999422 eV Core-core repulsion = 28508.197340 eV Total energy + Delta-G solvation = -4027.802082 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.90207 -40.83514 -39.23668 -36.72271 -36.44189 -36.13062 -35.67155 -33.03531 -31.94095 -29.66567 -28.24978 -28.12099 -28.04511 -26.34987 -25.40065 -24.14925 -23.30790 -23.04759 -21.50416 -20.71127 -19.91346 -19.14186 -18.41590 -17.94230 -17.32726 -16.93258 -16.76005 -16.36847 -16.18627 -16.03403 -15.54459 -15.38645 -15.07050 -14.83423 -14.74406 -14.73286 -14.46882 -14.27258 -13.68483 -13.56927 -13.38030 -13.24665 -13.10335 -13.08224 -13.01332 -12.96264 -12.88401 -12.77312 -12.69622 -12.64823 -12.36795 -12.21177 -12.00676 -11.92169 -11.88062 -11.80864 -11.29279 -11.03894 -10.96656 -10.81357 -10.72646 -10.21199 -9.69127 -9.02924 -7.96539 -5.26251 1.35672 1.41862 1.43018 1.52678 1.63069 1.78477 2.26120 2.51464 2.91249 3.22213 3.37364 3.57466 3.62408 3.81305 3.87508 3.90612 3.96717 4.03357 4.12363 4.15444 4.22184 4.26841 4.30542 4.41086 4.54453 4.59561 4.68296 4.70085 4.72961 4.74034 4.81324 4.82376 4.86824 4.91778 4.93208 4.95491 5.00744 5.02688 5.06928 5.11555 5.18088 5.26043 5.31131 5.33545 5.37523 5.37829 5.44818 5.51088 6.22329 6.25456 6.46848 6.97252 7.19842 7.29491 8.04447 8.26037 9.25687 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.007587 B = 0.005248 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3689.603555 B = 5333.580029 C = 7755.447503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.125 3.875 3 H 0.081 0.919 4 N -0.705 5.705 5 C 0.519 3.481 6 O -0.579 6.579 7 C -0.081 4.081 8 C -0.124 4.124 9 C -0.132 4.132 10 C -0.138 4.138 11 C 0.516 3.484 12 O -0.570 6.570 13 N -0.585 5.585 14 C 0.092 3.908 15 C 0.158 3.842 16 H 0.090 0.910 17 C 0.137 3.863 18 N -0.742 5.742 19 C -0.243 4.243 20 H 0.078 0.922 21 C -0.074 4.074 22 N -0.962 5.962 23 Si 0.970 3.030 24 H -0.263 1.263 25 H -0.297 1.297 26 H -0.295 1.295 27 C -0.164 4.164 28 C -0.177 4.177 29 C -0.162 4.162 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.411 0.589 34 H 0.058 0.942 35 H 0.092 0.908 36 H 0.034 0.966 37 H 0.065 0.935 38 H 0.094 0.906 39 H 0.063 0.937 40 H 0.032 0.968 41 H 0.098 0.902 42 H 0.058 0.942 43 H 0.083 0.917 44 H 0.071 0.929 45 H 0.053 0.947 46 H 0.037 0.963 47 H 0.035 0.965 48 H 0.369 0.631 49 H 0.247 0.753 50 H 0.126 0.874 51 H 0.089 0.911 52 H 0.114 0.886 53 H 0.119 0.881 54 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.983 -6.815 0.392 17.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.016 3.984 3 H 0.099 0.901 4 N -0.358 5.358 5 C 0.307 3.693 6 O -0.458 6.458 7 C -0.084 4.084 8 C -0.181 4.181 9 C -0.190 4.190 10 C -0.196 4.196 11 C 0.304 3.696 12 O -0.450 6.450 13 N -0.315 5.315 14 C -0.050 4.050 15 C 0.054 3.946 16 H 0.108 0.892 17 C 0.011 3.989 18 N -0.385 5.385 19 C -0.375 4.375 20 H 0.096 0.904 21 C -0.267 4.267 22 N -0.612 5.612 23 Si 0.800 3.200 24 H -0.187 1.187 25 H -0.224 1.224 26 H -0.223 1.223 27 C -0.183 4.183 28 C -0.214 4.214 29 C -0.199 4.199 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.249 0.751 34 H 0.077 0.923 35 H 0.111 0.889 36 H 0.053 0.947 37 H 0.084 0.916 38 H 0.112 0.888 39 H 0.082 0.918 40 H 0.051 0.949 41 H 0.116 0.884 42 H 0.077 0.923 43 H 0.101 0.899 44 H 0.090 0.910 45 H 0.072 0.928 46 H 0.055 0.945 47 H 0.053 0.947 48 H 0.201 0.799 49 H 0.056 0.944 50 H 0.144 0.856 51 H 0.108 0.892 52 H 0.132 0.868 53 H 0.137 0.863 54 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.849 -6.444 0.315 17.112 hybrid contribution 1.694 0.180 0.097 1.706 sum -14.155 -6.264 0.412 15.485 Atomic orbital electron populations 1.22063 0.90090 1.03948 1.04157 1.20752 0.97440 0.96619 0.83605 0.90129 1.45729 1.67160 1.14708 1.08210 1.21304 0.75946 0.86717 0.85312 1.90659 1.51752 1.17588 1.85790 1.20864 0.97774 0.97768 0.91980 1.21654 1.02199 0.97749 0.96512 1.21855 0.98116 0.95468 1.03533 1.21862 0.93692 1.00566 1.03461 1.20666 0.77561 0.86189 0.85233 1.90608 1.48113 1.20396 1.85930 1.47631 1.64219 1.12708 1.06992 1.21597 1.00685 0.96771 0.85925 1.21065 0.93398 0.79764 1.00359 0.89187 1.21369 0.87129 0.96823 0.93621 1.42498 1.11247 1.51868 1.32888 1.19608 0.90962 1.17813 1.09097 0.90382 1.25566 1.01761 1.01334 0.98036 1.69862 1.31760 1.41003 1.18613 0.85119 0.79818 0.77730 0.77362 1.18673 1.22406 1.22252 1.22413 0.99601 0.98066 0.98209 1.23211 1.01466 1.03553 0.93139 1.23070 1.00403 0.94181 1.02267 0.90466 0.91141 0.89209 0.75122 0.92274 0.88946 0.94676 0.91604 0.88762 0.91810 0.94884 0.88354 0.92308 0.89868 0.91037 0.92839 0.94517 0.94683 0.79872 0.94430 0.85604 0.89248 0.86772 0.86256 0.89413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.70 9.21 71.98 0.66 -3.04 16 2 C 0.12 4.32 2.11 44.25 0.09 4.42 16 3 H 0.08 3.41 5.92 -2.39 -0.01 3.39 16 4 N -0.70 -24.00 4.82 -446.11 -2.15 -26.15 16 5 C 0.52 18.51 6.45 87.66 0.56 19.08 16 6 O -0.58 -25.20 15.64 -3.04 -0.05 -25.25 16 7 C -0.08 -2.17 0.87 -52.92 -0.05 -2.21 16 8 C -0.12 -3.21 7.76 71.98 0.56 -2.65 16 9 C -0.13 -2.46 8.37 71.98 0.60 -1.86 16 10 C -0.14 -3.78 8.37 71.98 0.60 -3.17 16 11 C 0.52 18.97 6.30 87.66 0.55 19.52 16 12 O -0.57 -23.50 15.38 -3.04 -0.05 -23.55 16 13 N -0.59 -19.20 2.33 -822.57 -1.91 -21.11 16 14 C 0.09 2.75 9.76 127.77 1.25 3.99 16 15 C 0.16 4.79 1.88 44.99 0.08 4.87 16 16 H 0.09 2.90 4.64 -2.39 -0.01 2.88 16 17 C 0.14 5.24 4.24 86.38 0.37 5.61 16 18 N -0.74 -38.14 5.43 -343.45 -1.87 -40.00 16 19 C -0.24 -13.78 9.99 84.03 0.84 -12.94 16 20 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 21 C -0.07 -4.40 5.50 84.86 0.47 -3.94 16 22 N -0.96 -61.31 13.06 21.65 0.28 -61.03 16 23 Si 0.97 47.71 29.55 68.60 2.03 49.74 16 24 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 25 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 26 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 27 C -0.16 -3.46 5.32 -10.80 -0.06 -3.52 16 28 C -0.18 -3.41 9.59 30.62 0.29 -3.12 16 29 C -0.16 -2.96 9.94 30.62 0.30 -2.65 16 30 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.09 1.97 6.79 -2.38 -0.02 1.96 16 33 H 0.41 13.06 6.56 -92.71 -0.61 12.46 16 34 H 0.06 1.53 8.10 -2.39 -0.02 1.51 16 35 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.03 1.10 8.10 -2.39 -0.02 1.08 16 37 H 0.06 1.16 7.56 -2.39 -0.02 1.15 16 38 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 42 H 0.06 1.62 7.56 -2.38 -0.02 1.60 16 43 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 44 H 0.07 2.12 6.83 -2.39 -0.02 2.11 16 45 H 0.05 1.84 7.25 -2.38 -0.02 1.82 16 46 H 0.04 1.37 5.54 -2.39 -0.01 1.36 16 47 H 0.04 1.33 7.44 -2.38 -0.02 1.31 16 48 H 0.37 20.77 6.51 -92.71 -0.60 20.16 16 49 H 0.25 15.39 8.31 -92.70 -0.77 14.62 16 50 H 0.13 2.26 8.14 -2.38 -0.02 2.24 16 51 H 0.09 2.08 5.80 -2.38 -0.01 2.06 16 52 H 0.11 1.70 8.14 -2.39 -0.02 1.69 16 53 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 54 H 0.09 1.84 7.66 -2.39 -0.02 1.82 16 Total: -1.00 -77.57 421.17 3.11 -74.45 By element: Atomic # 1 Polarization: 54.81 SS G_CDS: -0.31 Total: 54.50 kcal Atomic # 6 Polarization: 11.26 SS G_CDS: 7.14 Total: 18.39 kcal Atomic # 7 Polarization: -142.64 SS G_CDS: -5.65 Total: -148.29 kcal Atomic # 8 Polarization: -48.71 SS G_CDS: -0.09 Total: -48.80 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 2.03 Total: 49.74 kcal Total: -77.57 3.11 -74.45 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755563395.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.450 kcal (2) G-P(sol) polarization free energy of solvation -77.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds