Wall clock time and date at job start Sat Apr 11 2020 05:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.47073 * 2 1 4 4 C 1.46505 * 119.99896 * 269.99770 * 3 2 1 5 5 C 1.53001 * 109.47201 * 269.99926 * 4 3 2 6 6 C 1.34779 * 120.00054 * 89.99830 * 3 2 1 7 7 O 1.21273 * 120.00093 * 0.02562 * 6 3 2 8 8 C 1.50706 * 119.99767 * 179.97438 * 6 3 2 9 9 C 1.53000 * 109.46735 * 180.02562 * 8 6 3 10 10 C 1.50703 * 109.46912 * 180.02562 * 9 8 6 11 11 O 1.21278 * 119.99985 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00161 * 180.02562 * 10 9 8 13 13 C 1.46496 * 120.00271 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47194 * 179.97438 * 13 12 10 15 15 H 1.09003 * 110.88685 * 51.11672 * 14 13 12 16 16 C 1.54910 * 111.00439 * 287.19257 * 14 13 12 17 17 N 1.47420 * 104.83311 * 204.91696 * 16 14 13 18 18 C 1.36948 * 125.64844 * 204.08148 * 17 16 14 19 19 H 1.08003 * 119.99636 * 0.03209 * 18 17 16 20 20 C 1.38806 * 119.99858 * 180.02562 * 18 17 16 21 21 N 1.31621 * 120.00098 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99864 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46765 * 60.00373 * 22 20 18 24 24 H 1.48500 * 109.47343 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47335 * 300.00660 * 22 20 18 26 26 C 1.47024 * 108.70560 * 24.13028 * 17 16 14 27 27 C 1.54329 * 107.26674 * 358.94041 * 26 17 16 28 28 H 1.08999 * 110.72041 * 96.17366 * 27 26 17 29 29 C 1.53002 * 110.86861 * 219.37491 * 27 26 17 30 30 H 1.09006 * 109.47070 * 59.99803 * 1 2 3 31 31 H 1.09000 * 109.47105 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47478 * 300.00268 * 1 2 3 33 33 H 1.08998 * 109.46873 * 240.00081 * 2 1 3 34 34 H 1.08997 * 109.46529 * 119.99967 * 2 1 3 35 35 H 1.08996 * 109.47101 * 30.00360 * 4 3 2 36 36 H 1.09003 * 109.46885 * 149.99968 * 4 3 2 37 37 H 1.08996 * 109.47448 * 300.00222 * 5 4 3 38 38 H 1.09001 * 109.46659 * 60.00103 * 5 4 3 39 39 H 1.08992 * 109.47078 * 179.97438 * 5 4 3 40 40 H 1.09001 * 109.46797 * 60.00350 * 8 6 3 41 41 H 1.08992 * 109.47518 * 300.00347 * 8 6 3 42 42 H 1.09002 * 109.47398 * 300.00410 * 9 8 6 43 43 H 1.09001 * 109.47194 * 60.00591 * 9 8 6 44 44 H 0.97005 * 119.99463 * 359.97438 * 12 10 9 45 45 H 1.09002 * 109.47021 * 299.99722 * 13 12 10 46 46 H 1.09001 * 109.47001 * 59.99554 * 13 12 10 47 47 H 1.08997 * 110.37035 * 323.75886 * 16 14 13 48 48 H 1.09003 * 110.36753 * 86.07742 * 16 14 13 49 49 H 0.96999 * 119.99333 * 179.97438 * 21 20 18 50 50 H 1.08998 * 109.87989 * 239.52100 * 26 17 16 51 51 H 1.08999 * 109.87926 * 118.35666 * 26 17 16 52 52 H 1.08997 * 109.46925 * 173.61192 * 29 27 26 53 53 H 1.09002 * 109.47153 * 293.60964 * 29 27 26 54 54 H 1.08998 * 109.47063 * 53.60886 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.7076 1.8314 -1.7104 6 6 2.2429 2.0166 1.1672 7 8 2.0412 1.4447 2.2175 8 6 2.7458 3.4372 1.1671 9 6 2.9162 3.9179 2.6096 10 6 3.4185 5.3388 2.6096 11 8 3.6207 5.9104 1.5593 12 7 3.6440 5.9738 3.7768 13 6 4.1317 7.3552 3.7768 14 6 4.3023 7.8359 5.2193 15 1 4.8926 7.1256 5.7983 16 6 2.9274 8.0902 5.8860 17 7 3.1998 9.0746 6.9490 18 6 2.4441 9.2625 8.0756 19 1 1.5636 8.6596 8.2419 20 6 2.8099 10.2277 9.0037 21 7 3.8828 10.9626 8.8008 22 14 1.7787 10.4844 10.5400 23 1 1.7414 9.2257 11.3271 24 1 2.3774 11.5659 11.3630 25 1 0.3974 10.8661 10.1509 26 6 4.4164 9.8222 6.5989 27 6 4.9360 9.2515 5.2625 28 1 4.5886 9.8553 4.4242 29 6 6.4634 9.1609 5.2656 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8932 -0.5138 0.8900 35 1 1.5817 1.6877 -2.0284 36 1 2.0955 3.1410 -1.1384 37 1 4.3883 2.2155 -0.9508 38 1 3.8745 0.7621 -1.8407 39 1 3.8891 2.3448 -2.6545 40 1 2.0281 4.0766 0.6531 41 1 3.7060 3.4828 0.6535 42 1 1.9561 3.8723 3.1237 43 1 3.6342 3.2784 3.1233 44 1 3.4826 5.5164 4.6169 45 1 5.0915 7.4017 3.2621 46 1 3.4130 7.9943 3.2638 47 1 2.2240 8.4997 5.1610 48 1 2.5371 7.1672 6.3148 49 1 4.1382 11.6373 9.4492 50 1 5.1691 9.6901 7.3761 51 1 4.1811 10.8802 6.4837 52 1 6.7990 8.6524 4.3618 53 1 6.8868 10.1648 5.2961 54 1 6.7923 8.6010 6.1410 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102592702.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:59 Heat of formation + Delta-G solvation = -89.849602 kcal Electronic energy + Delta-G solvation = -29652.665165 eV Core-core repulsion = 25623.525397 eV Total energy + Delta-G solvation = -4029.139768 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.29320 -40.59727 -39.52543 -37.24205 -36.03930 -34.65024 -34.21015 -32.71118 -32.53568 -30.89251 -30.33141 -27.95570 -27.20727 -26.08642 -24.48730 -24.37430 -23.38483 -21.69331 -21.54334 -20.58624 -19.81938 -18.90668 -18.51490 -17.54116 -17.37183 -17.26477 -16.80601 -16.56606 -16.20334 -15.80433 -15.58591 -15.06682 -14.92344 -14.81623 -14.67275 -14.49861 -14.24673 -14.06676 -14.04665 -13.53662 -13.47303 -13.42614 -13.19035 -13.10766 -13.09036 -12.84367 -12.79881 -12.64558 -12.53343 -12.42054 -12.27953 -11.96538 -11.90704 -11.86217 -11.82864 -11.55336 -11.40514 -11.35297 -10.83885 -10.81660 -10.68849 -10.02791 -9.71399 -8.88627 -7.84097 -5.19650 1.45305 1.48529 1.54744 1.59642 1.66697 1.91797 2.34071 2.49644 3.33394 3.46606 3.62717 3.77393 3.83666 3.95267 3.96676 4.04443 4.07805 4.12568 4.22014 4.24867 4.39836 4.46884 4.51287 4.51919 4.60221 4.61639 4.63386 4.75439 4.77120 4.83959 4.84637 4.89099 4.94510 4.96357 4.98324 5.01907 5.04871 5.10240 5.17584 5.28178 5.35838 5.38471 5.41544 5.47464 5.52487 5.63504 5.72864 5.82645 6.21158 6.36288 6.57506 7.11326 7.14758 7.25715 7.79114 8.43560 9.25780 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.017784 B = 0.001883 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.036433 B =14870.121328 C =16114.372102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.107 3.893 3 N -0.611 5.611 4 C 0.097 3.903 5 C -0.170 4.170 6 C 0.512 3.488 7 O -0.580 6.580 8 C -0.117 4.117 9 C -0.120 4.120 10 C 0.516 3.484 11 O -0.579 6.579 12 N -0.720 5.720 13 C 0.145 3.855 14 C -0.091 4.091 15 H 0.088 0.912 16 C 0.137 3.863 17 N -0.630 5.630 18 C -0.243 4.243 19 H 0.082 0.918 20 C -0.069 4.069 21 N -0.950 5.950 22 Si 0.978 3.022 23 H -0.276 1.276 24 H -0.295 1.295 25 H -0.279 1.279 26 C 0.192 3.808 27 C -0.102 4.102 28 H 0.074 0.926 29 C -0.127 4.127 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.034 0.966 33 H 0.102 0.898 34 H 0.063 0.937 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.047 0.953 38 H 0.059 0.941 39 H 0.082 0.918 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.104 0.896 43 H 0.108 0.892 44 H 0.412 0.588 45 H 0.076 0.924 46 H 0.058 0.942 47 H 0.017 0.983 48 H 0.047 0.953 49 H 0.246 0.754 50 H 0.016 0.984 51 H -0.001 1.001 52 H 0.076 0.924 53 H 0.053 0.947 54 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.392 -21.268 -23.471 31.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.016 4.016 3 N -0.344 5.344 4 C -0.025 4.025 5 C -0.228 4.228 6 C 0.301 3.699 7 O -0.460 6.460 8 C -0.157 4.157 9 C -0.160 4.160 10 C 0.303 3.697 11 O -0.460 6.460 12 N -0.371 5.371 13 C 0.021 3.979 14 C -0.110 4.110 15 H 0.106 0.894 16 C 0.012 3.988 17 N -0.356 5.356 18 C -0.372 4.372 19 H 0.100 0.900 20 C -0.261 4.261 21 N -0.599 5.599 22 Si 0.807 3.193 23 H -0.202 1.202 24 H -0.221 1.221 25 H -0.205 1.205 26 C 0.067 3.933 27 C -0.121 4.121 28 H 0.093 0.907 29 C -0.184 4.184 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.053 0.947 33 H 0.120 0.880 34 H 0.082 0.918 35 H 0.118 0.882 36 H 0.105 0.895 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.101 0.899 40 H 0.124 0.876 41 H 0.126 0.874 42 H 0.122 0.878 43 H 0.126 0.874 44 H 0.248 0.752 45 H 0.094 0.906 46 H 0.076 0.924 47 H 0.035 0.965 48 H 0.065 0.935 49 H 0.055 0.945 50 H 0.034 0.966 51 H 0.017 0.983 52 H 0.095 0.905 53 H 0.072 0.928 54 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.365 -21.036 -23.498 31.541 hybrid contribution -0.619 0.541 1.682 1.872 sum -0.984 -20.496 -21.816 29.950 Atomic orbital electron populations 1.22080 0.95471 1.02904 1.01582 1.21514 0.94705 0.81943 1.03394 1.48185 1.65087 1.14682 1.06450 1.21841 0.97852 0.98280 0.84480 1.22185 0.95841 1.02550 1.02194 1.20943 0.76626 0.88982 0.83312 1.90685 1.53918 1.68998 1.32414 1.21379 1.04537 0.92051 0.97741 1.21342 1.04552 0.91575 0.98515 1.20923 0.76611 0.88961 0.83158 1.90672 1.53811 1.69217 1.32259 1.46026 1.67090 1.14732 1.09262 1.21138 0.99646 0.81917 0.95199 1.22474 0.96682 0.96991 0.94883 0.89371 1.21771 0.95191 0.92076 0.89795 1.44799 1.28621 1.40939 1.21219 1.19423 1.05588 1.15560 0.96586 0.90032 1.25666 0.99489 0.98820 1.02172 1.70188 1.27264 1.25556 1.36933 0.85156 0.77867 0.77231 0.79095 1.20160 1.22110 1.20478 1.20978 0.87426 0.92845 0.92042 1.22320 0.96810 0.95396 0.97616 0.90714 1.21635 0.92995 1.01855 1.01954 0.91490 0.90300 0.94719 0.88027 0.91824 0.88163 0.89486 0.93387 0.92175 0.89868 0.87583 0.87437 0.87811 0.87405 0.75169 0.90600 0.92388 0.96485 0.93511 0.94472 0.96614 0.98276 0.90490 0.92751 0.93382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 10.24 71.98 0.74 -1.08 16 2 C 0.11 1.27 6.13 86.38 0.53 1.80 16 3 N -0.61 -8.27 2.47 -821.81 -2.03 -10.30 16 4 C 0.10 0.75 5.93 86.38 0.51 1.27 16 5 C -0.17 -1.21 10.24 71.98 0.74 -0.48 16 6 C 0.51 9.77 7.67 87.66 0.67 10.44 16 7 O -0.58 -15.37 15.56 -3.01 -0.05 -15.41 16 8 C -0.12 -1.95 3.54 29.85 0.11 -1.84 16 9 C -0.12 -2.20 4.99 29.85 0.15 -2.05 16 10 C 0.52 11.98 7.83 87.66 0.69 12.67 16 11 O -0.58 -16.95 15.98 -3.02 -0.05 -17.00 16 12 N -0.72 -16.31 5.50 -463.07 -2.55 -18.86 16 13 C 0.15 3.81 5.13 86.38 0.44 4.25 16 14 C -0.09 -2.84 2.49 -9.40 -0.02 -2.86 16 15 H 0.09 2.68 8.05 -2.39 -0.02 2.66 16 16 C 0.14 5.39 6.65 86.86 0.58 5.97 16 17 N -0.63 -32.43 3.39 -691.98 -2.35 -34.78 16 18 C -0.24 -13.72 10.28 84.03 0.86 -12.85 16 19 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 20 C -0.07 -3.95 5.49 84.86 0.47 -3.49 16 21 N -0.95 -57.85 10.31 21.65 0.22 -57.63 16 22 Si 0.98 46.28 29.55 68.60 2.03 48.31 16 23 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 24 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 25 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 26 C 0.19 9.50 4.97 86.73 0.43 9.93 16 27 C -0.10 -3.60 3.01 -9.60 -0.03 -3.63 16 28 H 0.07 2.55 8.04 -2.39 -0.02 2.53 16 29 C -0.13 -3.73 9.17 71.98 0.66 -3.07 16 30 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.10 0.66 8.07 -2.39 -0.02 0.64 16 34 H 0.06 1.03 7.42 -2.39 -0.02 1.01 16 35 H 0.10 0.40 8.07 -2.39 -0.02 0.38 16 36 H 0.09 0.66 6.44 -2.39 -0.02 0.65 16 37 H 0.05 0.48 7.22 -2.39 -0.02 0.46 16 38 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 39 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.11 1.66 7.36 -2.39 -0.02 1.64 16 41 H 0.11 1.65 7.14 -2.39 -0.02 1.64 16 42 H 0.10 1.89 8.10 -2.39 -0.02 1.87 16 43 H 0.11 1.85 8.10 -2.39 -0.02 1.83 16 44 H 0.41 8.00 8.47 -92.70 -0.79 7.21 16 45 H 0.08 1.90 8.09 -2.39 -0.02 1.88 16 46 H 0.06 1.68 7.96 -2.39 -0.02 1.66 16 47 H 0.02 0.69 7.91 -2.39 -0.02 0.67 16 48 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 49 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 50 H 0.02 0.87 7.02 -2.39 -0.02 0.85 16 51 H 0.00 -0.06 7.50 -2.39 -0.02 -0.08 16 52 H 0.08 1.80 8.09 -2.39 -0.02 1.78 16 53 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 54 H 0.05 1.47 8.07 -2.39 -0.02 1.46 16 Total: -1.00 -75.95 428.10 2.82 -73.13 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: 0.07 Total: 17.60 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: 7.52 Total: 14.96 kcal Atomic # 7 Polarization: -114.87 SS G_CDS: -6.71 Total: -121.58 kcal Atomic # 8 Polarization: -32.32 SS G_CDS: -0.10 Total: -32.41 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -75.95 2.82 -73.13 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102592702.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.724 kcal (2) G-P(sol) polarization free energy of solvation -75.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds