Wall clock time and date at job start Sat Apr 11 2020 05:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47231 * 2 1 4 4 C 1.46502 * 119.99568 * 269.99569 * 3 2 1 5 5 C 1.50702 * 109.47238 * 270.00035 * 4 3 2 6 6 H 1.07994 * 120.00027 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99927 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00169 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99738 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47254 * 89.99570 * 9 7 5 11 11 H 1.48500 * 109.46798 * 209.99821 * 9 7 5 12 12 H 1.48496 * 109.47254 * 329.99218 * 9 7 5 13 13 C 1.34775 * 120.00132 * 89.99695 * 3 2 1 14 14 O 1.21287 * 119.99785 * 179.97438 * 13 3 2 15 15 C 1.50694 * 120.00160 * 0.02562 * 13 3 2 16 16 N 1.46896 * 109.47316 * 186.04151 * 15 13 3 17 17 C 1.48560 * 111.00147 * 176.49276 * 16 15 13 18 18 C 1.54383 * 104.59525 * 200.96153 * 17 16 15 19 19 H 1.08993 * 110.41478 * 142.79481 * 18 17 16 20 20 C 1.53001 * 110.31939 * 264.95579 * 18 17 16 21 21 C 1.54257 * 105.05984 * 23.84697 * 18 17 16 22 22 H 1.08999 * 110.33026 * 241.00236 * 21 18 17 23 23 C 1.53003 * 110.32274 * 118.89895 * 21 18 17 24 24 C 1.52995 * 109.47518 * 175.00040 * 23 21 18 25 25 N 1.46494 * 109.47539 * 180.02562 * 24 23 21 26 26 C 1.34777 * 120.00282 * 180.02562 * 25 24 23 27 27 C 1.50701 * 120.00172 * 179.97438 * 26 25 24 28 28 O 1.21280 * 119.99995 * 359.97438 * 26 25 24 29 29 C 1.48561 * 111.00211 * 61.07378 * 16 15 13 30 30 H 1.08994 * 109.47206 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47346 * 300.00481 * 1 2 3 32 32 H 1.08997 * 109.46805 * 60.00396 * 1 2 3 33 33 H 1.08998 * 109.47346 * 239.99519 * 2 1 3 34 34 H 1.09002 * 109.47224 * 119.99846 * 2 1 3 35 35 H 1.08996 * 109.47249 * 30.00053 * 4 3 2 36 36 H 1.09002 * 109.46781 * 149.99798 * 4 3 2 37 37 H 0.96994 * 120.00116 * 180.02562 * 8 7 5 38 38 H 1.08998 * 109.47171 * 66.03969 * 15 13 3 39 39 H 1.09005 * 109.46928 * 306.04165 * 15 13 3 40 40 H 1.08999 * 110.41228 * 82.17990 * 17 16 15 41 41 H 1.09003 * 110.40929 * 319.73353 * 17 16 15 42 42 H 1.09004 * 109.47003 * 175.63662 * 20 18 17 43 43 H 1.08999 * 109.47405 * 295.63357 * 20 18 17 44 44 H 1.08998 * 109.47256 * 55.63660 * 20 18 17 45 45 H 1.09003 * 109.46859 * 54.99814 * 23 21 18 46 46 H 1.08996 * 109.47096 * 295.00657 * 23 21 18 47 47 H 1.09003 * 109.47240 * 60.00007 * 24 23 21 48 48 H 1.09001 * 109.47100 * 300.00052 * 24 23 21 49 49 H 0.97000 * 120.00215 * 359.97438 * 25 24 23 50 50 H 1.09003 * 109.46896 * 59.99705 * 27 26 25 51 51 H 1.08996 * 109.47145 * 179.97438 * 27 26 25 52 52 H 1.08996 * 109.47149 * 300.00494 * 27 26 25 53 53 H 1.09000 * 110.41194 * 40.25805 * 29 16 15 54 54 H 1.09003 * 110.40966 * 277.82425 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6859 1.8348 -1.7038 6 1 4.3429 1.2308 -1.0958 7 6 4.1496 2.3902 -2.8775 8 7 3.3496 3.1262 -3.6177 9 14 5.9136 2.0960 -3.4170 10 1 5.9762 0.8754 -4.2604 11 1 6.3931 3.2635 -4.1994 12 1 6.7737 1.9153 -2.2201 13 6 2.2429 2.0166 1.1672 14 8 2.6477 3.1599 1.1671 15 6 1.9923 1.3061 2.4723 16 7 2.1707 2.2484 3.5849 17 6 1.8495 1.6045 4.8847 18 6 1.5534 2.7812 5.8391 19 1 0.7427 2.5233 6.5205 20 6 2.8103 3.1551 6.6275 21 6 1.1311 3.9461 4.9203 22 1 1.8180 4.7849 5.0323 23 6 -0.2989 4.3850 5.2419 24 6 -0.6536 5.6181 4.4086 25 7 -2.0225 6.0387 4.7170 26 6 -2.5538 7.1112 4.0973 27 6 -3.9623 7.5436 4.4141 28 8 -1.8983 7.7284 3.2847 29 6 1.2074 3.3752 3.4880 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 1.5819 1.6876 -2.0284 36 1 2.0956 3.1409 -1.1385 37 1 3.6757 3.5166 -4.4436 38 1 2.6970 0.4813 2.5781 39 1 0.9738 0.9177 2.4847 40 1 2.7020 1.0284 5.2444 41 1 0.9721 0.9654 4.7857 42 1 2.6076 4.0346 7.2387 43 1 3.0962 2.3233 7.2714 44 1 3.6224 3.3737 5.9342 45 1 -0.3745 4.6286 6.3017 46 1 -0.9893 3.5755 5.0051 47 1 -0.5780 5.3746 3.3489 48 1 0.0369 6.4276 4.6456 49 1 -2.5470 5.5449 5.3666 50 1 -4.0378 7.7875 5.4738 51 1 -4.2149 8.4221 3.8205 52 1 -4.6527 6.7340 4.1777 53 1 0.2295 3.0132 3.1704 54 1 1.5764 4.1324 2.7961 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102627433.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:03 Heat of formation + Delta-G solvation = -108.817978 kcal Electronic energy + Delta-G solvation = -30660.071030 eV Core-core repulsion = 26630.108732 eV Total energy + Delta-G solvation = -4029.962298 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.22358 -40.62800 -39.79300 -36.97594 -36.50774 -35.02349 -34.49754 -32.81447 -31.64285 -30.76742 -29.96209 -28.42010 -27.74042 -26.09596 -24.85791 -24.19742 -23.17761 -21.88662 -21.65268 -20.65347 -19.86329 -18.63459 -17.96585 -17.85299 -17.32676 -17.09081 -16.82547 -16.56232 -16.49519 -16.18595 -15.60051 -15.47811 -14.79340 -14.71074 -14.63352 -14.50616 -14.18898 -14.15068 -14.04057 -13.79080 -13.48017 -13.44750 -13.27695 -13.16907 -13.10428 -13.00670 -12.77543 -12.69653 -12.55979 -12.50982 -12.33440 -12.17640 -12.01580 -11.84025 -11.73158 -11.59864 -11.47747 -11.38287 -10.96749 -10.66543 -10.47717 -10.16827 -9.48237 -9.31166 -8.24294 -6.39527 1.33104 1.37166 1.47439 1.61694 1.85914 2.22954 2.26740 2.40282 3.04692 3.09963 3.53655 3.62503 3.73947 3.88102 3.96881 4.08481 4.10109 4.18445 4.23998 4.33172 4.36793 4.41303 4.49344 4.50750 4.53794 4.60858 4.66134 4.69750 4.72121 4.77636 4.89835 4.91017 4.95190 4.98742 5.00958 5.02169 5.09921 5.13993 5.18895 5.25936 5.29448 5.32895 5.34768 5.42729 5.52938 5.56340 5.83459 5.92781 6.03586 6.05243 6.56923 6.69073 6.82494 7.27198 7.27673 7.53623 8.82762 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.009340 B = 0.002842 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2997.020141 B = 9851.547225 C =11168.184868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.100 3.900 3 N -0.607 5.607 4 C 0.266 3.734 5 C -0.541 4.541 6 H 0.053 0.947 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.969 3.031 10 H -0.260 1.260 11 H -0.282 1.282 12 H -0.273 1.273 13 C 0.493 3.507 14 O -0.582 6.582 15 C 0.042 3.958 16 N -0.517 5.517 17 C 0.034 3.966 18 C -0.079 4.079 19 H 0.110 0.890 20 C -0.139 4.139 21 C -0.082 4.082 22 H 0.067 0.933 23 C -0.102 4.102 24 C 0.115 3.885 25 N -0.715 5.715 26 C 0.494 3.506 27 C -0.162 4.162 28 O -0.612 6.612 29 C 0.042 3.958 30 H 0.098 0.902 31 H 0.056 0.944 32 H 0.035 0.965 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.020 0.980 36 H -0.010 1.010 37 H 0.267 0.733 38 H 0.119 0.881 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.069 0.931 44 H 0.035 0.965 45 H 0.103 0.897 46 H 0.086 0.914 47 H 0.033 0.967 48 H 0.049 0.951 49 H 0.421 0.579 50 H 0.118 0.882 51 H 0.082 0.918 52 H 0.113 0.887 53 H 0.039 0.961 54 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.269 -6.363 26.628 31.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.022 4.022 3 N -0.339 5.339 4 C 0.144 3.856 5 C -0.579 4.579 6 H 0.071 0.929 7 C -0.194 4.194 8 N -0.570 5.570 9 Si 0.793 3.207 10 H -0.185 1.185 11 H -0.207 1.207 12 H -0.198 1.198 13 C 0.281 3.719 14 O -0.462 6.462 15 C -0.089 4.089 16 N -0.242 5.242 17 C -0.093 4.093 18 C -0.098 4.098 19 H 0.128 0.872 20 C -0.196 4.196 21 C -0.102 4.102 22 H 0.086 0.914 23 C -0.140 4.140 24 C -0.009 4.009 25 N -0.368 5.368 26 C 0.283 3.717 27 C -0.221 4.221 28 O -0.494 6.494 29 C -0.086 4.086 30 H 0.117 0.883 31 H 0.075 0.925 32 H 0.054 0.946 33 H 0.090 0.910 34 H 0.119 0.881 35 H 0.038 0.962 36 H 0.008 0.992 37 H 0.076 0.924 38 H 0.137 0.863 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.088 0.912 44 H 0.055 0.945 45 H 0.122 0.878 46 H 0.104 0.896 47 H 0.051 0.949 48 H 0.068 0.932 49 H 0.259 0.741 50 H 0.136 0.864 51 H 0.101 0.899 52 H 0.131 0.869 53 H 0.057 0.943 54 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -14.059 -5.093 25.852 29.865 hybrid contribution 0.224 0.052 -1.276 1.296 sum -13.835 -5.041 24.576 28.650 Atomic orbital electron populations 1.22144 0.94690 1.03531 1.01365 1.21741 0.95201 0.81343 1.03962 1.48305 1.64275 1.15184 1.06142 1.18626 0.95262 0.91192 0.80521 1.21701 0.97846 1.31936 1.06446 0.92914 1.25903 1.02555 0.94433 0.96476 1.70062 1.37879 1.34257 1.14800 0.85392 0.78813 0.78273 0.78196 1.18466 1.20699 1.19828 1.21261 0.77467 0.86712 0.86428 1.90638 1.47082 1.20626 1.87808 1.22184 1.03125 0.95642 0.87910 1.65121 1.49352 1.07982 1.01746 1.23373 1.01098 0.96724 0.88078 1.21925 0.99248 0.92742 0.95851 0.87237 1.21800 0.96609 1.01935 0.99282 1.21914 0.96868 0.98445 0.92955 0.91436 1.21787 0.95447 0.95832 1.00942 1.21294 0.83273 0.97432 0.98941 1.45934 1.15520 1.30684 1.44679 1.21846 0.90883 0.79528 0.79467 1.21918 0.90006 1.04350 1.05864 1.90750 1.65131 1.56568 1.36928 1.23128 0.93159 0.94281 0.98023 0.88318 0.92477 0.94570 0.90977 0.88077 0.96238 0.99210 0.92440 0.86270 0.89619 0.89213 0.91828 0.91904 0.91190 0.94527 0.87812 0.89578 0.94876 0.93240 0.74073 0.86352 0.89914 0.86855 0.94265 0.93620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.98 10.18 71.98 0.73 -3.25 16 2 C 0.10 3.09 5.85 86.38 0.51 3.60 16 3 N -0.61 -26.83 2.46 -826.15 -2.03 -28.86 16 4 C 0.27 15.10 5.16 85.63 0.44 15.54 16 5 C -0.54 -32.60 9.39 25.60 0.24 -32.36 16 6 H 0.05 3.14 7.81 -2.91 -0.02 3.12 16 7 C 0.01 0.30 5.46 84.66 0.46 0.76 16 8 N -0.93 -58.76 13.29 21.45 0.28 -58.47 16 9 Si 0.97 46.81 29.54 68.60 2.03 48.84 16 10 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 11 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 12 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 13 C 0.49 21.58 7.32 87.66 0.64 22.23 16 14 O -0.58 -32.17 14.01 -3.05 -0.04 -32.22 16 15 C 0.04 1.24 3.85 85.56 0.33 1.57 16 16 N -0.52 -14.95 5.18 -886.06 -4.59 -19.54 16 17 C 0.03 0.61 6.04 86.45 0.52 1.14 16 18 C -0.08 -1.17 3.30 -9.90 -0.03 -1.21 16 19 H 0.11 0.95 7.71 -2.39 -0.02 0.94 16 20 C -0.14 -2.13 8.90 71.98 0.64 -1.49 16 21 C -0.08 -1.67 2.71 -9.90 -0.03 -1.69 16 22 H 0.07 1.62 7.71 -2.39 -0.02 1.60 16 23 C -0.10 -1.41 4.51 30.59 0.14 -1.28 16 24 C 0.12 2.50 5.54 86.38 0.48 2.98 16 25 N -0.71 -11.57 5.56 -463.08 -2.57 -14.14 16 26 C 0.49 10.83 7.94 87.66 0.70 11.52 16 27 C -0.16 -1.67 10.32 71.24 0.74 -0.94 16 28 O -0.61 -21.88 17.09 -3.03 -0.05 -21.93 16 29 C 0.04 1.25 4.39 86.45 0.38 1.63 16 30 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.06 1.32 7.12 -2.39 -0.02 1.31 16 32 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.07 2.38 8.07 -2.39 -0.02 2.37 16 34 H 0.10 2.36 6.61 -2.39 -0.02 2.34 16 35 H 0.02 1.13 8.07 -2.39 -0.02 1.11 16 36 H -0.01 -0.68 7.42 -2.39 -0.02 -0.70 16 37 H 0.27 15.78 8.31 -92.71 -0.77 15.00 16 38 H 0.12 3.00 7.71 -2.39 -0.02 2.98 16 39 H 0.09 1.98 6.70 -2.38 -0.02 1.96 16 40 H 0.09 1.49 7.86 -2.39 -0.02 1.47 16 41 H 0.06 0.88 7.92 -2.39 -0.02 0.86 16 42 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 43 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.09 0.95 7.98 -2.39 -0.02 0.93 16 47 H 0.03 0.98 7.58 -2.39 -0.02 0.96 16 48 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 49 H 0.42 2.88 8.47 -92.71 -0.79 2.09 16 50 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 51 H 0.08 1.06 8.12 -2.39 -0.02 1.04 16 52 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 53 H 0.04 1.10 7.56 -2.39 -0.02 1.09 16 54 H 0.05 1.88 6.54 -2.39 -0.02 1.87 16 Total: -1.00 -92.86 427.85 -0.02 -92.88 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 0.08 Total: 14.68 kcal Atomic # 6 Polarization: 11.87 SS G_CDS: 6.88 Total: 18.76 kcal Atomic # 7 Polarization: -112.10 SS G_CDS: -8.91 Total: -121.01 kcal Atomic # 8 Polarization: -54.05 SS G_CDS: -0.09 Total: -54.15 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Total: -92.86 -0.02 -92.88 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102627433.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.938 kcal (2) G-P(sol) polarization free energy of solvation -92.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds