Wall clock time and date at job start Sat Apr 11 2020 05:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46495 * 109.46948 * 2 1 4 4 C 1.34779 * 119.99966 * 180.02562 * 3 2 1 5 5 O 1.21279 * 120.00028 * 359.97438 * 4 3 2 6 6 C 1.50703 * 120.00134 * 180.02562 * 4 3 2 7 7 C 1.52998 * 109.47487 * 179.97438 * 6 4 3 8 8 C 1.52999 * 109.47364 * 179.97438 * 7 6 4 9 9 C 1.50701 * 109.47032 * 179.97438 * 8 7 6 10 10 O 1.21281 * 120.00382 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00149 * 180.02562 * 9 8 7 12 12 C 1.47431 * 125.64341 * 0.03974 * 11 9 8 13 13 C 1.54912 * 104.82949 * 204.09147 * 12 11 9 14 14 H 1.09000 * 111.00254 * 81.07017 * 13 12 11 15 15 C 1.53004 * 111.00695 * 204.91801 * 13 12 11 16 16 C 1.55156 * 101.58604 * 322.99608 * 13 12 11 17 17 H 1.09000 * 110.86864 * 277.06858 * 16 13 12 18 18 C 1.52992 * 110.72497 * 153.86469 * 16 13 12 19 19 C 1.52997 * 109.47482 * 180.02562 * 18 16 13 20 20 N 1.46505 * 109.47212 * 179.97438 * 19 18 16 21 21 C 1.36936 * 119.99992 * 179.97438 * 20 19 18 22 22 H 1.08006 * 119.99834 * 0.02562 * 21 20 19 23 23 C 1.38801 * 120.00093 * 180.02562 * 21 20 19 24 24 N 1.31619 * 120.00176 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00265 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.46725 * 59.99976 * 25 23 21 27 27 H 1.48498 * 109.47172 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.46920 * 300.00189 * 25 23 21 29 29 C 1.47023 * 125.65069 * 180.02562 * 11 9 8 30 30 H 1.08998 * 109.47099 * 299.99636 * 1 2 3 31 31 H 1.09001 * 109.47487 * 60.00161 * 1 2 3 32 32 H 1.09002 * 109.47062 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.47419 * 239.99832 * 2 1 3 34 34 H 1.09001 * 109.47487 * 119.99839 * 2 1 3 35 35 H 0.96998 * 120.00600 * 0.02562 * 3 2 1 36 36 H 1.09002 * 109.47508 * 59.99801 * 6 4 3 37 37 H 1.09006 * 109.47073 * 300.00052 * 6 4 3 38 38 H 1.09002 * 109.46799 * 59.99502 * 7 6 4 39 39 H 1.09006 * 109.47117 * 300.00160 * 7 6 4 40 40 H 1.08998 * 109.46760 * 60.00299 * 8 7 6 41 41 H 1.08998 * 109.47181 * 299.99771 * 8 7 6 42 42 H 1.08992 * 110.37314 * 322.93281 * 12 11 9 43 43 H 1.09008 * 110.36286 * 85.14824 * 12 11 9 44 44 H 1.08997 * 109.47132 * 172.19914 * 15 13 12 45 45 H 1.09005 * 109.47105 * 292.20409 * 15 13 12 46 46 H 1.09001 * 109.46710 * 52.19730 * 15 13 12 47 47 H 1.09002 * 109.47103 * 60.02094 * 18 16 13 48 48 H 1.08998 * 109.46862 * 300.02906 * 18 16 13 49 49 H 1.09002 * 109.47153 * 59.99783 * 19 18 16 50 50 H 1.09001 * 109.46832 * 299.99974 * 19 18 16 51 51 H 0.96996 * 119.99606 * 0.02562 * 20 19 18 52 52 H 0.97001 * 120.00803 * 179.97438 * 24 23 21 53 53 H 1.08996 * 109.87920 * 59.56468 * 29 11 9 54 54 H 1.08996 * 109.88311 * 298.39002 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 3.3433 1.6275 -0.0005 5 8 4.1315 0.7057 -0.0005 6 6 3.8457 3.0483 0.0001 7 6 5.3756 3.0484 -0.0001 8 6 5.8856 4.4909 -0.0001 9 6 7.3926 4.4909 0.0004 10 8 7.9991 3.4407 0.0003 11 7 8.0665 5.6581 0.0010 12 6 7.4585 7.0012 0.0020 13 6 8.5403 7.9266 -0.6090 14 1 8.5356 7.8674 -1.6974 15 6 8.3551 9.3711 -0.1398 16 6 9.8405 7.3143 -0.0244 17 1 10.0264 7.6870 0.9829 18 6 11.0339 7.6059 -0.9362 19 6 12.2984 6.9899 -0.3341 20 7 13.4410 7.2687 -1.2077 21 6 14.6876 6.8132 -0.8707 22 1 14.8284 6.2481 0.0389 23 6 15.7703 7.0778 -1.6980 24 7 15.5988 7.7669 -2.8061 25 14 17.4708 6.4559 -1.2386 26 1 17.4466 4.9742 -1.1423 27 1 18.4464 6.8678 -2.2796 28 1 17.8710 7.0306 0.0709 29 6 9.5296 5.8028 0.0010 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.3880 2.1185 0.0004 36 1 3.4828 3.5617 0.8905 37 1 3.4819 3.5627 -0.8895 38 1 5.7389 2.5349 -0.8903 39 1 5.7391 2.5342 0.8897 40 1 5.5224 5.0047 0.8899 41 1 5.5222 5.0047 -0.8901 42 1 6.5591 7.0110 -0.6136 43 1 7.2236 7.3105 1.0205 44 1 9.2030 9.9716 -0.4691 45 1 7.4363 9.7760 -0.5641 46 1 8.2939 9.3945 0.9483 47 1 11.1642 8.6840 -1.0304 48 1 10.8528 7.1745 -1.9207 49 1 12.1680 5.9118 -0.2400 50 1 12.4794 7.4214 0.6503 51 1 13.3145 7.7766 -2.0243 52 1 16.3554 7.9522 -3.3842 53 1 9.9495 5.3231 -0.8831 54 1 9.9465 5.3539 0.9024 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104917704.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:14 Heat of formation + Delta-G solvation = -118.824109 kcal Electronic energy + Delta-G solvation = -28750.979120 eV Core-core repulsion = 24720.582924 eV Total energy + Delta-G solvation = -4030.396197 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.29723 -40.70798 -39.22185 -36.88031 -36.37809 -35.26100 -34.61915 -33.43644 -31.94959 -31.65102 -29.76875 -28.15798 -27.20342 -25.96530 -24.46760 -23.83864 -22.86427 -21.93007 -21.31598 -21.01105 -20.18713 -19.17679 -18.20644 -17.79722 -17.45161 -17.07359 -16.86111 -16.66970 -16.47139 -15.85929 -15.63230 -15.42964 -15.33803 -15.03906 -14.75692 -14.58473 -14.32830 -14.16913 -13.85840 -13.56557 -13.47921 -13.28162 -13.08406 -12.88072 -12.83884 -12.81994 -12.69505 -12.63698 -12.48161 -12.39357 -12.35928 -12.28031 -12.15509 -11.91238 -11.73378 -11.62865 -11.53053 -11.17318 -11.02443 -10.94440 -10.79759 -10.09807 -9.66940 -9.03264 -7.98132 -5.27429 1.44498 1.48234 1.54327 1.63844 1.66967 1.95413 2.31920 2.53751 3.34967 3.39912 3.55869 3.67165 3.71993 3.83561 4.05686 4.06313 4.13803 4.14154 4.20326 4.25083 4.34733 4.43759 4.50051 4.50846 4.55978 4.60874 4.62567 4.67710 4.70077 4.74111 4.78007 4.79866 4.91513 4.96359 4.97518 5.04574 5.05430 5.15971 5.20950 5.25871 5.26646 5.29634 5.34823 5.39396 5.43492 5.46576 5.51568 5.58095 6.24572 6.56651 6.59893 7.17736 7.30499 7.31775 8.06320 8.30243 9.25176 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.017023 B = 0.001591 C = 0.001479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.431440 B =17596.264717 C =18925.137862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.107 3.893 3 N -0.719 5.719 4 C 0.499 3.501 5 O -0.598 6.598 6 C -0.126 4.126 7 C -0.089 4.089 8 C -0.119 4.119 9 C 0.509 3.491 10 O -0.601 6.601 11 N -0.620 5.620 12 C 0.103 3.897 13 C -0.095 4.095 14 H 0.082 0.918 15 C -0.136 4.136 16 C -0.079 4.079 17 H 0.097 0.903 18 C -0.100 4.100 19 C 0.149 3.851 20 N -0.747 5.747 21 C -0.253 4.253 22 H 0.071 0.929 23 C -0.073 4.073 24 N -0.968 5.968 25 Si 0.974 3.026 26 H -0.281 1.281 27 H -0.291 1.291 28 H -0.275 1.275 29 C 0.109 3.891 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.420 0.580 36 H 0.133 0.867 37 H 0.131 0.869 38 H 0.040 0.960 39 H 0.042 0.958 40 H 0.132 0.868 41 H 0.130 0.870 42 H 0.111 0.889 43 H 0.094 0.906 44 H 0.052 0.948 45 H 0.079 0.921 46 H 0.067 0.933 47 H 0.075 0.925 48 H 0.053 0.947 49 H 0.008 0.992 50 H 0.022 0.978 51 H 0.374 0.626 52 H 0.253 0.747 53 H 0.040 0.960 54 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -39.874 -0.442 7.670 40.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.017 4.017 3 N -0.373 5.373 4 C 0.287 3.713 5 O -0.479 6.479 6 C -0.165 4.165 7 C -0.128 4.128 8 C -0.158 4.158 9 C 0.301 3.699 10 O -0.483 6.483 11 N -0.353 5.353 12 C -0.018 4.018 13 C -0.114 4.114 14 H 0.100 0.900 15 C -0.193 4.193 16 C -0.099 4.099 17 H 0.115 0.885 18 C -0.138 4.138 19 C 0.022 3.978 20 N -0.390 5.390 21 C -0.385 4.385 22 H 0.089 0.911 23 C -0.265 4.265 24 N -0.618 5.618 25 Si 0.803 3.197 26 H -0.208 1.208 27 H -0.216 1.216 28 H -0.201 1.201 29 C -0.014 4.014 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.257 0.743 36 H 0.151 0.849 37 H 0.149 0.851 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.150 0.850 41 H 0.148 0.852 42 H 0.129 0.871 43 H 0.112 0.888 44 H 0.071 0.929 45 H 0.098 0.902 46 H 0.086 0.914 47 H 0.093 0.907 48 H 0.072 0.928 49 H 0.026 0.974 50 H 0.040 0.960 51 H 0.206 0.794 52 H 0.061 0.939 53 H 0.058 0.942 54 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -38.968 -1.817 7.790 39.780 hybrid contribution 1.658 -0.545 -0.350 1.780 sum -37.310 -2.362 7.440 38.117 Atomic orbital electron populations 1.21939 0.91611 1.04051 1.03537 1.21332 0.96403 0.83079 1.00897 1.46011 1.06782 1.09601 1.74932 1.21500 0.82417 0.92799 0.74575 1.90742 1.56950 1.48713 1.51518 1.21682 0.94930 0.92002 1.07897 1.20974 0.94672 0.95290 1.01868 1.21690 0.87627 0.98808 1.07652 1.21436 0.92126 0.81442 0.74940 1.90734 1.72074 1.32997 1.52454 1.48718 1.06831 1.07238 1.72494 1.22753 0.97070 0.78998 1.02998 1.22423 0.92300 0.96108 1.00605 0.89989 1.21678 1.02723 0.92917 1.02001 1.22179 0.94891 0.92273 1.00534 0.88505 1.21560 0.92710 1.01217 0.98289 1.20862 0.87068 0.96490 0.93356 1.42575 1.04260 1.65967 1.26199 1.19607 0.86617 1.27354 1.04905 0.91072 1.25572 1.01887 1.01741 0.97319 1.69801 1.31216 1.46010 1.14818 0.85208 0.79433 0.77922 0.77187 1.20780 1.21647 1.20079 1.21927 0.81488 0.97674 1.00311 0.90808 0.90862 0.90301 0.93292 0.93210 0.74254 0.84936 0.85089 0.94144 0.93908 0.85017 0.85248 0.87101 0.88761 0.92915 0.90190 0.91365 0.90664 0.92847 0.97428 0.95987 0.79371 0.93857 0.94163 0.93245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.54 10.03 71.98 0.72 0.18 16 2 C 0.11 1.18 6.39 86.38 0.55 1.73 16 3 N -0.72 -6.80 5.56 -463.06 -2.57 -9.37 16 4 C 0.50 8.41 7.83 87.66 0.69 9.10 16 5 O -0.60 -17.87 15.98 -3.03 -0.05 -17.92 16 6 C -0.13 -1.05 5.70 29.85 0.17 -0.88 16 7 C -0.09 -1.64 3.79 30.59 0.12 -1.53 16 8 C -0.12 -1.49 4.71 29.85 0.14 -1.35 16 9 C 0.51 13.04 7.85 87.66 0.69 13.73 16 10 O -0.60 -23.13 16.31 -3.03 -0.05 -23.18 16 11 N -0.62 -13.92 3.33 -811.78 -2.70 -16.62 16 12 C 0.10 1.23 6.16 86.86 0.53 1.76 16 13 C -0.10 -1.48 3.09 -9.40 -0.03 -1.51 16 14 H 0.08 1.40 8.05 -2.39 -0.02 1.38 16 15 C -0.14 -1.54 9.31 71.98 0.67 -0.87 16 16 C -0.08 -1.86 2.45 -9.61 -0.02 -1.88 16 17 H 0.10 2.10 8.04 -2.39 -0.02 2.08 16 18 C -0.10 -3.14 4.71 30.59 0.14 -2.99 16 19 C 0.15 6.25 6.11 86.38 0.53 6.78 16 20 N -0.75 -40.12 5.60 -343.45 -1.92 -42.05 16 21 C -0.25 -14.94 9.99 84.03 0.84 -14.10 16 22 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 23 C -0.07 -4.34 5.50 84.86 0.47 -3.88 16 24 N -0.97 -60.83 13.06 21.65 0.28 -60.55 16 25 Si 0.97 47.81 29.55 68.60 2.03 49.83 16 26 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 27 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 28 H -0.27 -12.89 7.11 99.48 0.71 -12.19 16 29 C 0.11 3.14 5.61 86.73 0.49 3.62 16 30 H 0.07 0.12 8.14 -2.39 -0.02 0.10 16 31 H 0.07 0.13 8.14 -2.39 -0.02 0.11 16 32 H 0.08 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 34 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.42 0.51 8.47 -92.71 -0.79 -0.28 16 36 H 0.13 0.17 8.14 -2.39 -0.02 0.15 16 37 H 0.13 0.22 8.14 -2.38 -0.02 0.20 16 38 H 0.04 1.04 8.06 -2.39 -0.02 1.02 16 39 H 0.04 1.08 8.06 -2.38 -0.02 1.06 16 40 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.13 0.75 7.85 -2.39 -0.02 0.73 16 42 H 0.11 0.60 7.48 -2.39 -0.02 0.58 16 43 H 0.09 0.76 7.99 -2.38 -0.02 0.74 16 44 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 46 H 0.07 0.66 8.08 -2.39 -0.02 0.64 16 47 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 48 H 0.05 1.79 8.06 -2.39 -0.02 1.77 16 49 H 0.01 0.34 7.49 -2.39 -0.02 0.33 16 50 H 0.02 0.91 8.14 -2.39 -0.02 0.90 16 51 H 0.37 21.01 7.67 -92.71 -0.71 20.30 16 52 H 0.25 15.33 8.31 -92.71 -0.77 14.56 16 53 H 0.04 1.40 7.76 -2.39 -0.02 1.39 16 54 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -92.23 434.97 1.08 -91.16 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: -0.63 Total: 20.79 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: 6.69 Total: 7.91 kcal Atomic # 7 Polarization: -121.68 SS G_CDS: -6.91 Total: -128.59 kcal Atomic # 8 Polarization: -41.00 SS G_CDS: -0.10 Total: -41.10 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 2.03 Total: 49.83 kcal Total: -92.23 1.08 -91.16 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104917704.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.668 kcal (2) G-P(sol) polarization free energy of solvation -92.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds