Wall clock time and date at job start Sat Apr 11 2020 05:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47320 * 2 1 4 4 C 1.46501 * 119.99916 * 270.00476 * 3 2 1 5 5 C 1.50699 * 109.47100 * 269.99404 * 4 3 2 6 6 H 1.08004 * 119.99700 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99973 * 179.97438 * 5 4 3 8 8 N 1.31506 * 119.99940 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99578 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46928 * 60.00558 * 9 7 5 11 11 H 1.48503 * 109.46649 * 180.02562 * 9 7 5 12 12 H 1.48489 * 109.47539 * 299.99978 * 9 7 5 13 13 C 1.34780 * 119.99755 * 90.00067 * 3 2 1 14 14 O 1.21279 * 119.99747 * 180.02562 * 13 3 2 15 15 C 1.50694 * 120.00273 * 0.02562 * 13 3 2 16 16 N 1.46901 * 109.47388 * 179.97438 * 15 13 3 17 17 C 1.46896 * 110.99855 * 180.02562 * 16 15 13 18 18 C 1.53002 * 109.46853 * 179.97438 * 17 16 15 19 19 N 1.46496 * 109.47425 * 180.02562 * 18 17 16 20 20 C 1.34777 * 120.00266 * 180.02562 * 19 18 17 21 21 O 1.21274 * 120.00135 * 0.27234 * 20 19 18 22 22 C 1.50706 * 119.99766 * 179.97438 * 20 19 18 23 23 C 1.52999 * 109.46573 * 179.97438 * 22 20 19 24 24 C 1.54266 * 110.03792 * 292.90549 * 23 22 20 25 25 C 1.54961 * 104.16181 * 217.14014 * 24 23 22 26 26 C 1.54885 * 102.77932 * 37.88909 * 25 24 23 27 27 C 1.53875 * 110.03091 * 175.69140 * 23 22 20 28 28 H 1.09005 * 109.46903 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46940 * 299.99495 * 1 2 3 30 30 H 1.08995 * 109.47228 * 59.99874 * 1 2 3 31 31 H 1.09002 * 109.47402 * 239.99890 * 2 1 3 32 32 H 1.09000 * 109.47669 * 120.00282 * 2 1 3 33 33 H 1.08998 * 109.47088 * 29.99633 * 4 3 2 34 34 H 1.09003 * 109.46767 * 149.99960 * 4 3 2 35 35 H 0.97007 * 120.00043 * 179.97438 * 8 7 5 36 36 H 1.09004 * 109.46814 * 60.00208 * 15 13 3 37 37 H 1.09000 * 109.47433 * 300.00051 * 15 13 3 38 38 H 1.00901 * 110.99921 * 303.95582 * 16 15 13 39 39 H 1.09000 * 109.47321 * 60.00668 * 17 16 15 40 40 H 1.08987 * 109.47458 * 299.99783 * 17 16 15 41 41 H 1.09004 * 109.46930 * 60.00139 * 18 17 16 42 42 H 1.09000 * 109.47312 * 300.00083 * 18 17 16 43 43 H 0.96999 * 119.99691 * 359.97438 * 19 18 17 44 44 H 1.09000 * 109.47161 * 299.99737 * 22 20 19 45 45 H 1.09001 * 109.46740 * 59.99879 * 22 20 19 46 46 H 1.08999 * 110.01809 * 54.30201 * 23 22 20 47 47 H 1.09000 * 110.48113 * 335.78905 * 24 23 22 48 48 H 1.09008 * 110.48152 * 98.42758 * 24 23 22 49 49 H 1.08994 * 110.72031 * 279.57006 * 25 24 23 50 50 H 1.09004 * 110.91930 * 156.30021 * 25 24 23 51 51 H 1.08998 * 110.48384 * 203.40508 * 26 25 24 52 52 H 1.09003 * 110.59736 * 80.81343 * 26 25 24 53 53 H 1.09005 * 110.03670 * 238.57201 * 27 23 22 54 54 H 1.09003 * 110.03297 * 359.94934 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0962 7 6 4.1490 2.3897 -2.8781 8 7 3.3489 3.1257 -3.6181 9 14 5.9134 2.0968 -3.4169 10 1 6.1416 0.6401 -3.5937 11 1 6.1608 2.7968 -4.7030 12 1 6.8406 2.6211 -2.3823 13 6 2.2430 2.0165 1.1673 14 8 2.6469 3.1601 1.1673 15 6 1.9924 1.3059 2.4723 16 7 2.3111 2.2057 3.5889 17 6 2.0788 1.5450 4.8802 18 6 2.4215 2.5109 6.0162 19 7 2.1904 1.8519 7.3040 20 6 2.4261 2.5161 8.4528 21 8 2.8247 3.6610 8.4205 22 6 2.1878 1.8383 9.7776 23 6 2.5307 2.8042 10.9135 24 6 4.0470 3.0877 10.9267 25 6 4.4025 3.1791 12.4322 26 6 3.5120 2.0794 13.0619 27 6 2.1904 2.1638 12.2706 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.5816 1.6877 -2.0283 34 1 2.0955 3.1411 -1.1383 35 1 3.6749 3.5162 -4.4441 36 1 2.6230 0.4187 2.5298 37 1 0.9446 1.0114 2.5303 38 1 3.2594 2.5438 3.5215 39 1 2.7100 0.6594 4.9540 40 1 1.0317 1.2522 4.9553 41 1 1.7907 3.3968 5.9426 42 1 3.4689 2.8034 5.9409 43 1 1.8671 0.9378 7.3299 44 1 1.1405 1.5455 9.8527 45 1 2.8189 0.9526 9.8512 46 1 1.9777 3.7355 10.7910 47 1 4.5920 2.2699 10.4551 48 1 4.2631 4.0309 10.4248 49 1 4.1444 4.1603 12.8305 50 1 5.4581 2.9626 12.5967 51 1 3.3385 2.2873 14.1177 52 1 3.9692 1.0978 12.9373 53 1 1.4730 2.7847 12.8072 54 1 1.7802 1.1652 12.1200 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122845283.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:36 Heat of formation + Delta-G solvation = -119.884441 kcal Electronic energy + Delta-G solvation = -28776.575615 eV Core-core repulsion = 24746.133439 eV Total energy + Delta-G solvation = -4030.442176 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.98161 -40.70197 -38.80396 -37.52805 -36.84027 -35.32337 -34.84559 -32.61576 -31.63685 -30.69941 -29.50970 -29.12112 -27.24039 -25.98404 -24.60655 -23.80069 -23.10068 -21.74212 -21.40906 -20.38197 -19.95546 -18.62927 -18.28023 -17.75649 -17.45161 -17.25591 -16.98744 -16.55214 -16.38341 -16.22475 -15.75378 -15.54407 -14.94465 -14.88606 -14.65502 -14.61803 -14.24227 -14.22474 -14.15616 -13.99941 -13.52074 -13.43679 -13.21951 -13.07260 -12.95022 -12.65095 -12.63401 -12.47616 -12.40124 -12.13325 -12.09987 -11.91602 -11.84897 -11.83066 -11.73036 -11.63820 -11.51586 -11.26766 -10.80979 -10.64568 -10.56890 -10.09621 -9.45189 -9.39628 -8.22196 -6.37541 1.35555 1.40290 1.47365 1.70367 1.87628 2.03333 2.33035 2.46889 3.07052 3.32753 3.66425 3.72416 3.74032 3.82443 3.87245 4.07550 4.10867 4.14367 4.34461 4.36734 4.39358 4.46104 4.47215 4.52481 4.60167 4.65857 4.69024 4.74882 4.85655 4.89776 4.91680 4.92918 4.96874 5.00045 5.01678 5.07138 5.11988 5.16387 5.22924 5.27994 5.36990 5.41967 5.44702 5.51714 5.57107 5.58255 5.82792 5.93100 6.06994 6.22068 6.60568 6.70794 6.84726 7.28921 7.33104 7.53620 8.84488 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.019003 B = 0.001559 C = 0.001483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.108266 B =17950.910868 C =18878.007502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.099 3.901 3 N -0.604 5.604 4 C 0.263 3.737 5 C -0.544 4.544 6 H 0.055 0.945 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.968 3.032 10 H -0.258 1.258 11 H -0.279 1.279 12 H -0.279 1.279 13 C 0.490 3.510 14 O -0.590 6.590 15 C 0.062 3.938 16 N -0.694 5.694 17 C 0.062 3.938 18 C 0.125 3.875 19 N -0.717 5.717 20 C 0.503 3.497 21 O -0.586 6.586 22 C -0.125 4.125 23 C -0.080 4.080 24 C -0.116 4.116 25 C -0.129 4.129 26 C -0.122 4.122 27 C -0.116 4.116 28 H 0.097 0.903 29 H 0.061 0.939 30 H 0.034 0.966 31 H 0.070 0.930 32 H 0.104 0.896 33 H 0.020 0.980 34 H -0.008 1.008 35 H 0.267 0.733 36 H 0.085 0.915 37 H 0.126 0.874 38 H 0.344 0.656 39 H 0.060 0.940 40 H 0.099 0.901 41 H 0.052 0.948 42 H 0.048 0.952 43 H 0.419 0.581 44 H 0.121 0.879 45 H 0.118 0.882 46 H 0.055 0.945 47 H 0.061 0.939 48 H 0.041 0.959 49 H 0.059 0.941 50 H 0.067 0.933 51 H 0.070 0.930 52 H 0.073 0.927 53 H 0.065 0.935 54 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.737 -14.388 31.734 35.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.023 4.023 3 N -0.336 5.336 4 C 0.142 3.858 5 C -0.583 4.583 6 H 0.073 0.927 7 C -0.192 4.192 8 N -0.568 5.568 9 Si 0.792 3.208 10 H -0.183 1.183 11 H -0.204 1.204 12 H -0.204 1.204 13 C 0.279 3.721 14 O -0.470 6.470 15 C -0.070 4.070 16 N -0.327 5.327 17 C -0.067 4.067 18 C 0.000 4.000 19 N -0.371 5.371 20 C 0.291 3.709 21 O -0.465 6.465 22 C -0.164 4.164 23 C -0.099 4.099 24 C -0.154 4.154 25 C -0.167 4.167 26 C -0.160 4.160 27 C -0.154 4.154 28 H 0.115 0.885 29 H 0.080 0.920 30 H 0.053 0.947 31 H 0.089 0.911 32 H 0.122 0.878 33 H 0.038 0.962 34 H 0.010 0.990 35 H 0.075 0.925 36 H 0.103 0.897 37 H 0.143 0.857 38 H 0.163 0.837 39 H 0.078 0.922 40 H 0.117 0.883 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.256 0.744 44 H 0.139 0.861 45 H 0.136 0.864 46 H 0.073 0.927 47 H 0.080 0.920 48 H 0.060 0.940 49 H 0.078 0.922 50 H 0.086 0.914 51 H 0.089 0.911 52 H 0.092 0.908 53 H 0.084 0.916 54 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.897 -12.606 31.501 34.438 hybrid contribution 1.551 -0.079 -1.170 1.944 sum -4.347 -12.685 30.331 33.162 Atomic orbital electron populations 1.22162 0.94634 1.03513 1.01647 1.21766 0.95271 0.81213 1.04026 1.48286 1.64074 1.15169 1.06106 1.18654 0.95206 0.91394 0.80594 1.21708 0.97951 1.32094 1.06544 0.92704 1.25880 1.02422 0.94475 0.96469 1.70052 1.37847 1.34139 1.14782 0.85465 0.78949 0.79069 0.77295 1.18271 1.20446 1.20432 1.21363 0.77383 0.86677 0.86678 1.90654 1.47751 1.20661 1.87948 1.21808 1.04659 0.93926 0.86581 1.59953 1.32635 1.38827 1.01308 1.22059 1.03343 0.94930 0.86368 1.21015 1.00399 0.96037 0.82531 1.45792 1.68197 1.18328 1.04739 1.21489 0.76053 0.86301 0.87085 1.90715 1.47278 1.20184 1.88366 1.21902 1.05851 0.99768 0.88889 1.21531 0.96152 0.97842 0.94369 1.22372 0.95729 1.00719 0.96533 1.22551 0.99953 0.99329 0.94868 1.22361 0.95344 0.98864 0.99393 1.22212 0.97738 1.01645 0.93796 0.88476 0.91971 0.94655 0.91148 0.87772 0.96162 0.98953 0.92457 0.89696 0.85672 0.83727 0.92170 0.88268 0.92905 0.93325 0.74376 0.86104 0.86352 0.92656 0.92007 0.94031 0.92204 0.91432 0.91088 0.90790 0.91603 0.89563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.72 10.24 71.98 0.74 -2.99 16 2 C 0.10 2.84 5.93 86.38 0.51 3.35 16 3 N -0.60 -25.16 2.46 -826.15 -2.03 -27.19 16 4 C 0.26 14.38 5.16 85.63 0.44 14.83 16 5 C -0.54 -31.64 9.39 25.60 0.24 -31.40 16 6 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 7 C 0.01 0.38 5.46 84.66 0.46 0.84 16 8 N -0.93 -57.00 13.29 21.45 0.28 -56.72 16 9 Si 0.97 45.23 29.54 68.60 2.03 47.26 16 10 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 12 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 13 C 0.49 20.08 7.71 87.65 0.68 20.75 16 14 O -0.59 -31.19 15.78 -3.03 -0.05 -31.23 16 15 C 0.06 1.58 4.72 85.55 0.40 1.98 16 16 N -0.69 -18.03 6.13 -517.96 -3.17 -21.20 16 17 C 0.06 0.98 5.80 86.30 0.50 1.48 16 18 C 0.13 2.45 5.93 86.38 0.51 2.96 16 19 N -0.72 -9.83 5.56 -463.06 -2.57 -12.40 16 20 C 0.50 9.14 7.61 87.66 0.67 9.81 16 21 O -0.59 -17.00 14.79 -3.01 -0.04 -17.05 16 22 C -0.12 -1.19 4.83 29.85 0.14 -1.04 16 23 C -0.08 -1.08 2.55 -10.07 -0.03 -1.11 16 24 C -0.12 -1.92 5.40 31.69 0.17 -1.75 16 25 C -0.13 -1.67 6.91 31.91 0.22 -1.45 16 26 C -0.12 -1.08 6.83 31.67 0.22 -0.87 16 27 C -0.12 -0.99 6.46 31.32 0.20 -0.79 16 28 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 29 H 0.06 1.31 7.22 -2.39 -0.02 1.29 16 30 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.07 2.18 8.07 -2.39 -0.02 2.16 16 32 H 0.10 2.11 6.44 -2.39 -0.02 2.10 16 33 H 0.02 1.13 8.07 -2.39 -0.02 1.11 16 34 H -0.01 -0.49 7.42 -2.39 -0.02 -0.51 16 35 H 0.27 15.38 8.31 -92.70 -0.77 14.61 16 36 H 0.09 1.68 7.40 -2.39 -0.02 1.66 16 37 H 0.13 2.48 7.19 -2.39 -0.02 2.46 16 38 H 0.34 10.19 8.43 -89.69 -0.76 9.44 16 39 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 42 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.42 2.33 8.47 -92.71 -0.79 1.55 16 44 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.12 0.58 8.02 -2.39 -0.02 0.56 16 46 H 0.05 1.02 7.94 -2.39 -0.02 1.00 16 47 H 0.06 0.97 7.77 -2.39 -0.02 0.96 16 48 H 0.04 0.95 7.63 -2.38 -0.02 0.93 16 49 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 51 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 52 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 53 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 54 H 0.09 0.40 7.67 -2.39 -0.02 0.38 16 Total: -1.00 -85.35 431.36 -0.14 -85.49 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -0.66 Total: 18.43 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: 6.08 Total: 14.62 kcal Atomic # 7 Polarization: -110.02 SS G_CDS: -7.49 Total: -117.51 kcal Atomic # 8 Polarization: -48.19 SS G_CDS: -0.09 Total: -48.28 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -85.35 -0.14 -85.49 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122845283.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.394 kcal (2) G-P(sol) polarization free energy of solvation -85.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds