Wall clock time and date at job start Sat Apr 11 2020 05:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47289 * 2 1 4 4 C 1.46503 * 119.99516 * 270.00166 * 3 2 1 5 5 C 1.50703 * 109.46826 * 269.99224 * 4 3 2 6 6 H 1.07999 * 119.99882 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99696 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99743 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 120.00464 * 0.02562 * 7 5 4 10 10 H 1.48493 * 109.47170 * 89.99684 * 9 7 5 11 11 H 1.48500 * 109.47306 * 209.99912 * 9 7 5 12 12 H 1.48507 * 109.46646 * 329.99789 * 9 7 5 13 13 C 1.34772 * 120.00175 * 89.99577 * 3 2 1 14 14 O 1.21289 * 119.99970 * 180.02562 * 13 3 2 15 15 C 1.50699 * 120.00172 * 0.02562 * 13 3 2 16 16 N 1.46904 * 109.47280 * 180.02562 * 15 13 3 17 17 C 1.46899 * 111.00029 * 180.02562 * 16 15 13 18 18 C 1.52997 * 109.47254 * 179.97438 * 17 16 15 19 19 N 1.46497 * 109.46983 * 179.97438 * 18 17 16 20 20 C 1.34780 * 119.99566 * 180.02562 * 19 18 17 21 21 O 1.21280 * 120.00423 * 359.97438 * 20 19 18 22 22 C 1.50701 * 119.99795 * 180.02562 * 20 19 18 23 23 C 1.52997 * 109.47212 * 179.97438 * 22 20 19 24 24 C 1.52992 * 109.47482 * 179.97438 * 23 22 20 25 25 C 1.53778 * 113.61727 * 274.13766 * 24 23 22 26 26 C 1.53956 * 87.02468 * 220.04570 * 25 24 23 27 27 C 1.53784 * 113.61658 * 176.52792 * 24 23 22 28 28 H 1.09000 * 109.47255 * 60.00211 * 1 2 3 29 29 H 1.08995 * 109.47312 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47568 * 300.00443 * 1 2 3 31 31 H 1.08996 * 109.47079 * 239.99413 * 2 1 3 32 32 H 1.08999 * 109.46743 * 119.99892 * 2 1 3 33 33 H 1.08995 * 109.47601 * 29.99977 * 4 3 2 34 34 H 1.09003 * 109.46646 * 150.00063 * 4 3 2 35 35 H 0.97001 * 120.00105 * 180.02562 * 8 7 5 36 36 H 1.08995 * 109.47029 * 60.00037 * 15 13 3 37 37 H 1.09003 * 109.46949 * 299.99857 * 15 13 3 38 38 H 1.00898 * 110.99612 * 303.95183 * 16 15 13 39 39 H 1.09001 * 109.46901 * 59.99571 * 17 16 15 40 40 H 1.09002 * 109.47043 * 299.99792 * 17 16 15 41 41 H 1.09001 * 109.46832 * 59.99813 * 18 17 16 42 42 H 1.09002 * 109.47153 * 300.00004 * 18 17 16 43 43 H 0.96995 * 120.00423 * 359.97438 * 19 18 17 44 44 H 1.09002 * 109.47060 * 299.99722 * 22 20 19 45 45 H 1.09001 * 109.47380 * 59.99809 * 22 20 19 46 46 H 1.09002 * 109.47153 * 299.99998 * 23 22 20 47 47 H 1.08998 * 109.47533 * 59.99628 * 23 22 20 48 48 H 1.09000 * 112.84915 * 45.33452 * 24 23 22 49 49 H 1.08996 * 113.61184 * 334.56845 * 25 24 23 50 50 H 1.09000 * 113.61578 * 105.46835 * 25 24 23 51 51 H 1.09002 * 113.53647 * 270.81670 * 26 25 24 52 52 H 1.08996 * 113.66740 * 139.92974 * 26 25 24 53 53 H 1.08998 * 113.61407 * 254.52625 * 27 24 23 54 54 H 1.08996 * 113.61156 * 25.35491 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7038 6 1 4.3427 1.2302 -1.0961 7 6 4.1494 2.3904 -2.8775 8 7 5.3914 2.1833 -3.2573 9 14 3.0136 3.4368 -3.9282 10 1 3.1172 4.8567 -3.5061 11 1 3.4067 3.3146 -5.3550 12 1 1.6137 2.9709 -3.7588 13 6 2.2429 2.0166 1.1671 14 8 2.6468 3.1602 1.1671 15 6 1.9922 1.3061 2.4723 16 7 2.3097 2.2064 3.5888 17 6 2.0773 1.5459 4.8802 18 6 2.4187 2.5122 6.0161 19 7 2.1863 1.8537 7.3039 20 6 2.4207 2.5184 8.4527 21 8 2.8244 3.6616 8.4204 22 6 2.1822 1.8408 9.7775 23 6 2.5235 2.8072 10.9134 24 6 2.2808 2.1195 12.2584 25 6 0.8281 2.2263 12.7516 26 6 1.4075 2.4492 14.1604 27 6 2.6752 2.9801 13.4703 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.5817 1.6876 -2.0284 34 1 2.0955 3.1410 -1.1385 35 1 5.7177 2.5743 -4.0829 36 1 2.6227 0.4189 2.5299 37 1 0.9443 1.0116 2.5302 38 1 3.2577 2.5451 3.5218 39 1 2.7090 0.6607 4.9544 40 1 1.0302 1.2523 4.9548 41 1 1.7873 3.3976 5.9420 42 1 3.4659 2.8055 5.9413 43 1 1.8631 0.9395 7.3299 44 1 1.1351 1.5472 9.8521 45 1 2.8139 0.9557 9.8518 46 1 3.5706 3.1005 10.8387 47 1 1.8921 3.6926 10.8393 48 1 2.6806 1.1061 12.2938 49 1 0.2954 3.0913 12.3566 50 1 0.2640 1.2989 12.6522 51 1 1.5674 1.5255 14.7165 52 1 0.8754 3.2053 14.7377 53 1 3.6000 2.6603 13.9504 54 1 2.6497 4.0515 13.2718 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001125380370.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:40 Heat of formation + Delta-G solvation = -91.639937 kcal Electronic energy + Delta-G solvation = -28397.366357 eV Core-core repulsion = 24368.148954 eV Total energy + Delta-G solvation = -4029.217402 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.90862 -40.73228 -39.59034 -37.62728 -36.89240 -35.34833 -34.81084 -33.71502 -31.94778 -30.85491 -29.53292 -27.59206 -26.47267 -26.14412 -24.38314 -23.78271 -23.22005 -22.76152 -21.22512 -20.26017 -19.92956 -19.10976 -18.21788 -17.74987 -17.49756 -17.23201 -16.88834 -16.76066 -16.32602 -16.26731 -15.66176 -15.47377 -15.07883 -14.99903 -14.73753 -14.66757 -14.49088 -14.27996 -14.09350 -13.72092 -13.65246 -13.47524 -13.31559 -13.27801 -13.14666 -12.87416 -12.64936 -12.53667 -12.42817 -12.33773 -12.25923 -12.03659 -11.88895 -11.87021 -11.74637 -11.39807 -11.17371 -10.96591 -10.84122 -10.78684 -10.62793 -10.12538 -9.46825 -9.38234 -8.35246 -6.39861 1.31219 1.35840 1.43672 1.66688 1.83300 2.00978 2.29896 2.36424 2.99588 3.30805 3.69303 3.69489 3.76362 3.80207 3.87977 4.00043 4.03733 4.08516 4.12795 4.29133 4.34584 4.38591 4.40943 4.45694 4.51148 4.66710 4.68599 4.75548 4.80973 4.86764 4.89243 4.90895 4.92646 4.94368 4.96922 5.03035 5.03993 5.06195 5.12166 5.20754 5.31526 5.41318 5.42227 5.46876 5.47408 5.66030 5.70354 5.86823 6.19274 6.24099 6.57810 6.61387 6.75673 7.21603 7.29845 7.46814 8.81652 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.025962 B = 0.001416 C = 0.001375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.229823 B =19774.945772 C =20364.493315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.098 3.902 3 N -0.601 5.601 4 C 0.226 3.774 5 C -0.535 4.535 6 H 0.030 0.970 7 C 0.012 3.988 8 N -0.945 5.945 9 Si 0.946 3.054 10 H -0.279 1.279 11 H -0.274 1.274 12 H -0.238 1.238 13 C 0.493 3.507 14 O -0.587 6.587 15 C 0.061 3.939 16 N -0.693 5.693 17 C 0.062 3.938 18 C 0.124 3.876 19 N -0.715 5.715 20 C 0.503 3.497 21 O -0.594 6.594 22 C -0.127 4.127 23 C -0.093 4.093 24 C -0.105 4.105 25 C -0.138 4.138 26 C -0.143 4.143 27 C -0.147 4.147 28 H 0.043 0.957 29 H 0.095 0.905 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.047 0.953 34 H 0.014 0.986 35 H 0.268 0.732 36 H 0.081 0.919 37 H 0.130 0.870 38 H 0.344 0.656 39 H 0.058 0.942 40 H 0.101 0.899 41 H 0.054 0.946 42 H 0.048 0.952 43 H 0.420 0.580 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.050 0.950 47 H 0.050 0.950 48 H 0.105 0.895 49 H 0.073 0.927 50 H 0.079 0.921 51 H 0.088 0.912 52 H 0.064 0.936 53 H 0.068 0.932 54 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.442 -11.269 31.135 36.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.024 4.024 3 N -0.333 5.333 4 C 0.103 3.897 5 C -0.574 4.574 6 H 0.048 0.952 7 C -0.186 4.186 8 N -0.586 5.586 9 Si 0.769 3.231 10 H -0.205 1.205 11 H -0.199 1.199 12 H -0.161 1.161 13 C 0.281 3.719 14 O -0.466 6.466 15 C -0.071 4.071 16 N -0.325 5.325 17 C -0.067 4.067 18 C -0.001 4.001 19 N -0.369 5.369 20 C 0.291 3.709 21 O -0.475 6.475 22 C -0.167 4.167 23 C -0.131 4.131 24 C -0.124 4.124 25 C -0.175 4.175 26 C -0.180 4.180 27 C -0.184 4.184 28 H 0.062 0.938 29 H 0.114 0.886 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.117 0.883 33 H 0.065 0.935 34 H 0.032 0.968 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.148 0.852 38 H 0.162 0.838 39 H 0.077 0.923 40 H 0.120 0.880 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.257 0.743 44 H 0.137 0.863 45 H 0.138 0.862 46 H 0.069 0.931 47 H 0.069 0.931 48 H 0.123 0.877 49 H 0.092 0.908 50 H 0.097 0.903 51 H 0.107 0.893 52 H 0.083 0.917 53 H 0.087 0.913 54 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.459 -9.563 30.936 35.462 hybrid contribution 1.141 0.109 -1.081 1.576 sum -13.318 -9.454 29.854 34.030 Atomic orbital electron populations 1.22162 0.93964 1.03658 1.02088 1.21793 0.95622 0.80977 1.04044 1.48061 1.64333 1.15248 1.05677 1.19253 0.94699 0.92919 0.82783 1.21582 0.97126 1.32007 1.06670 0.95194 1.25825 0.96655 0.97149 0.98964 1.70046 1.17387 1.46599 1.24532 0.85744 0.80546 0.78965 0.77875 1.20458 1.19882 1.16143 1.21348 0.77139 0.86705 0.86685 1.90656 1.47451 1.20622 1.87916 1.21818 1.04803 0.93849 0.86622 1.59990 1.32622 1.38627 1.01304 1.22065 1.03424 0.94876 0.86366 1.21036 1.00441 0.96118 0.82529 1.45787 1.68024 1.18328 1.04737 1.21562 0.75899 0.86148 0.87272 1.90719 1.47630 1.20602 1.88516 1.21698 1.06007 1.00160 0.88804 1.21273 1.01196 0.97543 0.93120 1.22581 0.97254 1.00003 0.92528 1.23022 0.95913 1.02331 0.96258 1.22859 0.96958 1.01582 0.96597 1.22979 0.98536 0.99639 0.97257 0.93820 0.88630 0.91802 0.91128 0.88257 0.93484 0.96773 0.92297 0.90117 0.85247 0.83818 0.92339 0.88032 0.92711 0.93383 0.74264 0.86280 0.86195 0.93091 0.93098 0.87667 0.90831 0.90275 0.89329 0.91719 0.91316 0.91131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.22 10.24 71.98 0.74 -2.48 16 2 C 0.10 2.64 5.93 86.38 0.51 3.15 16 3 N -0.60 -23.63 2.46 -826.16 -2.03 -25.66 16 4 C 0.23 11.05 4.23 85.63 0.36 11.41 16 5 C -0.54 -31.62 9.94 25.60 0.25 -31.37 16 6 H 0.03 1.96 8.06 -2.91 -0.02 1.94 16 7 C 0.01 0.72 5.47 84.65 0.46 1.18 16 8 N -0.95 -60.15 13.96 21.45 0.30 -59.86 16 9 Si 0.95 45.03 27.47 68.60 1.88 46.92 16 10 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 11 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 12 H -0.24 -10.18 6.54 99.48 0.65 -9.53 16 13 C 0.49 19.37 7.71 87.66 0.68 20.05 16 14 O -0.59 -29.71 15.78 -3.06 -0.05 -29.76 16 15 C 0.06 1.51 4.72 85.56 0.40 1.91 16 16 N -0.69 -17.63 6.13 -517.93 -3.17 -20.80 16 17 C 0.06 0.96 5.80 86.30 0.50 1.46 16 18 C 0.12 2.41 5.93 86.38 0.51 2.93 16 19 N -0.72 -9.82 5.56 -463.06 -2.57 -12.39 16 20 C 0.50 9.27 7.83 87.66 0.69 9.95 16 21 O -0.59 -17.76 15.98 -3.03 -0.05 -17.81 16 22 C -0.13 -1.19 5.70 29.85 0.17 -1.02 16 23 C -0.09 -1.25 4.33 30.59 0.13 -1.12 16 24 C -0.11 -0.95 3.64 -10.27 -0.04 -0.99 16 25 C -0.14 -1.13 7.65 31.18 0.24 -0.89 16 26 C -0.14 -1.19 8.09 31.18 0.25 -0.94 16 27 C -0.15 -1.53 7.65 31.12 0.24 -1.29 16 28 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.06 1.15 7.22 -2.39 -0.02 1.13 16 31 H 0.07 2.11 8.07 -2.39 -0.02 2.09 16 32 H 0.10 2.01 6.44 -2.39 -0.02 1.99 16 33 H 0.05 2.12 7.13 -2.39 -0.02 2.10 16 34 H 0.01 0.76 6.85 -2.39 -0.02 0.74 16 35 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 36 H 0.08 1.64 7.40 -2.39 -0.02 1.62 16 37 H 0.13 2.37 7.19 -2.39 -0.02 2.35 16 38 H 0.34 10.18 8.43 -89.70 -0.76 9.43 16 39 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.42 2.29 8.47 -92.71 -0.79 1.50 16 44 H 0.12 0.55 8.14 -2.39 -0.02 0.54 16 45 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.05 0.88 8.10 -2.39 -0.02 0.86 16 47 H 0.05 0.88 7.83 -2.39 -0.02 0.86 16 48 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 49 H 0.07 0.72 7.92 -2.39 -0.02 0.71 16 50 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 51 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 52 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 53 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 54 H 0.07 0.88 8.10 -2.39 -0.02 0.86 16 Total: -1.00 -87.45 434.28 -0.31 -87.76 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: -0.72 Total: 19.64 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: 6.10 Total: 11.95 kcal Atomic # 7 Polarization: -111.22 SS G_CDS: -7.48 Total: -118.70 kcal Atomic # 8 Polarization: -47.47 SS G_CDS: -0.10 Total: -47.57 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.88 Total: 46.92 kcal Total: -87.45 -0.31 -87.76 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001125380370.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.881 kcal (2) G-P(sol) polarization free energy of solvation -87.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds